BAC Information

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BAC

Clone NameB6Ng01-233L04
Chromosome6 (Build37)
Map Location 99,743,981 - 99,895,456
singlet/doubletdoublet
Overlap geneLOC626503, LOC100043703
Upstream geneLOC665979, Foxp1, Eif4e3, Gpr27, Prok2, LOC384466
Downstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233L04.bB6Ng01-233L04.g
ACCGA045680GA045681
length1,0231,137
definitionB6Ng01-233L04.b B6Ng01-233L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,743,981 - 99,744,998)(99,894,302 - 99,895,456)
sequence
gaattccataagggtagcaacagaaaacctcagcagtgaggtggaaaata
gaagcaacagtatctttagaactaaagaataaaatcactcacatttgaga
taaaatgaatctatgcatcaaaagatgggggtgtgtggatgcagaaagac
tttggaatgtgtcaacggaaagcgcatgctctgaaggagagatttaaaag
gattttgttgttgtttgtttgtttgtttgtttgttaaattacctgggcct
agtggctcatgtagtagcaaaactaaagtttagctttcttataacagggg
tctaaagagaaggaaaaggcctaatatataaaattcttaagagggagcaa
tggctagaaatttcccccaaatctgataaaaatgaataaactttcagagt
cactaagcccatcgaaaaacggacaatctacccagctgcatcggcatgaa
acttctgaaaactgaagaaagagaccaagaaatcccaaaagcagccagag
agccatagttgtatgcctcataggagactagcatctggattggctacact
tctacaaaaggagcaggttctagaacgggctgtacaactcacaaaacact
aggaacagcaggctggaactctgttctagcaaggagtccctccaggaaat
gggtgttgtggatttggtctatcacttatattatgttaatttggttcccc
gaattacatgggaattcatttgtctacataagacgctgagagtccctgcc
ccagttggttctgattggtaactaaagttgctggcagccaatggcaggga
agggagacagaggagagacttcagttttcccaggctaggggaccagactg
gaagatgggagagactgtcatgccaggaaagaataaaagaccaggccttc
gaagtgcagaagagagagcacaccaatcatggaaagagcggctccagatg
ccaccatttgatctagggcaacaaagatggaatatagattttagtaagca
ttaactcaggtatatgggagggg
gaattcacctgcatacacatgactgttcatgcacacatgcacacaaggac
tagaactaggaacgggagacttggttccagagggtctccactgagctgta
ggatcctgggcaaggcctttatctgggtagatttagttctggcctcttct
tatggtggctacacagactgagtctttaagtggttttacatcaaaagcat
caagaataacgatgatagggaaagcccattaggaccatctgcatgtgtga
tgctggggttctttgaggctaggtcacaccaaggttatcatttacaacaa
tgtttaagagttaagcaaagtttaaaagaaaaacaaaagctggtgtattt
atttttcttttctgtgtgtcagcacgcataagttcccacatattggagat
ggttacagagtcagatgtgtatgcttgtgtatggctgccagaggttggca
gcaggtgtattcctcaataattgtcctccactgtatgttttgaggtagac
tctctcactgaacctgtggctccattactggctaggctgtctagctagca
atttgggggatctacccgagtctctcccgacagctcttcattgccccagt
gttaagactgcaaggcatttaccaccacgcttggcttccggcatgagtgc
caggaatctgccctcaggttctcatgcttgcttagcaagcactccaacaa
ccaggctgtgtccctgtcctactcagctttcataaagaactaggttttga
cagtaaaactgtaaggtgggttatgagtgtgtggtttagatttagggata
agaggaacataggcacagttaaataaatccaagagcagaagcttcctggc
ccaaagtttgacaagcagaactggtccaaagttattgttgtgggtgagta
ccagaaccagaacccaccaaacactgcctttgtttagtccttttaaaatc
tgttcactagttcacatttgcagttatttccaaagagtggctgttttatt
ctactccccactcacccccttacctttctctacggataccgaacagtgct
tcattacccatctctgcacttcaattctcagtcgtcacccattggttctg
ggtctcaatagcctcatgggccaacagaaatggctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_99743981_99744998
seq2: B6Ng01-233L04.b_50_1068

seq1  TCCATAAGGGTAGCAACAGAAAACCTCAGCAGTGAGGTGGAAAATAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAGGGTAGCAACAGAAAACCTCAGCAGTGAGGTGGAAAATAGAAG  50

seq1  CAACAGTATCTTTAGAACTAAAGAATAAAATCACTCACATTTGAGATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTATCTTTAGAACTAAAGAATAAAATCACTCACATTTGAGATAAA  100

seq1  ATGAATCTATGCATCAAAAGATGGGGGTGTGTGGATGCAGAAAGACTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCTATGCATCAAAAGATGGGGGTGTGTGGATGCAGAAAGACTTTG  150

seq1  GAATGTGTCAACGGAAAGCGCATGCTCTGAAGGAGAGATTTAAAAGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGTCAACGGAAAGCGCATGCTCTGAAGGAGAGATTTAAAAGGATT  200

seq1  TTGTTGTTGTTTGTTTGTTTGTTTGTTTGTTAAATTACCTGGGCCTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTTGTTTGTTTGTTTGTTTGTTAAATTACCTGGGCCTAGTG  250

seq1  GCTCATGTAGTAGCAAAACTAAAGTTTAGCTTTCTTATAACAGGGGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGTAGTAGCAAAACTAAAGTTTAGCTTTCTTATAACAGGGGTCTA  300

seq1  AAGAGAAGGAAAAGGCCTAATATATAAAATTCTTAAGAGGGAGCAATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGAAAAGGCCTAATATATAAAATTCTTAAGAGGGAGCAATGGC  350

seq1  TAGAAATTTCCCCCAAATCTGATAAAAATGAATAAACTTTCAGAGTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTCCCCCAAATCTGATAAAAATGAATAAACTTTCAGAGTCACT  400

seq1  AAGCCCATCGAAAAACGGACAATCTACCCAGCTGCATCGGCATGAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCATCGAAAAACGGACAATCTACCCAGCTGCATCGGCATGAAACTT  450

seq1  CTGAAAACTGAAGAAAGAGACCAAGAAATCCCAAAAGCAGCCAGAGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACTGAAGAAAGAGACCAAGAAATCCCAAAAGCAGCCAGAGAGCC  500

seq1  ATAGTTGTATGCCTCATAGGAGACTAGCATCTGGATTGGCTACACTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGTATGCCTCATAGGAGACTAGCATCTGGATTGGCTACACTTCTA  550

seq1  CAAAAGGAGCAGGTTCTAGAACGGGCTGTACAACTCACAAAACACTAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAGCAGGTTCTAGAACGGGCTGTACAACTCACAAAACACTAGGA  600

seq1  ACAGCAGGCTGGAACTCTGTTCTAGCAAGGAGTCCCTCCAGGAAATGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGCTGGAACTCTGTTCTAGCAAGGAGTCCCTCCAGGAAATGGGT  650

seq1  GTTGTGGATTTGGTCTATCACTTATATTATGTTAATTTGGTTCCCCGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGATTTGGTCTATCACTTATATTATGTTAATTTGGTTCCCCGAAT  700

seq1  TACATGGGAATTCATTTGTCTACATAAGACGCTGAGAGTCCCTGCCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGGAATTCATTTGTCTACATAAGACGCTGAGAGTCCCTGCCCCAG  750

seq1  TTGGTTCTGATTGGTAACTAAAGTTGCTGGCAGCCAATGGCAGGGAAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTGATTGGTAACTAAAGTTGCTGGCAGCCAATGGCAGGGAAGGG  800

seq1  AGACAGAGGAGAGACTTCAGTTTTCCCAGGCTAGGGGACCAGACTGGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGGAGAGACTTCAGTTTTCCCAGGCTAGGGGACCAGACTGGAAG  850

seq1  ATGGGAGAGAACTGTCATGCCAGGAAAGAAT-AAAGACCAGGCCTTCGAA  899
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  ATGGGAGAG-ACTGTCATGCCAGGAAAGAATAAAAGACCAGGCCTTCGAA  899

seq1  GTGCAGAAGAGAGAGCACACCAATCATGG-AAGAGCGGCTCCAGATGCCA  948
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTGCAGAAGAGAGAGCACACCAATCATGGAAAGAGCGGCTCCAGATGCCA  949

seq1  CCATTTGATCTAGGGCAACAAAGATGGAATATAGATTTTAGTAAGCAATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCATTTGATCTAGGGCAACAAAGATGGAATATAGATTTTAGTAAGCATTA  999

seq1  ACTCAGGTATATTGGAGGGG  1018
      |||||||||||| |||||||
seq2  ACTCAGGTATATGGGAGGGG  1019

seq1: chr6_99894302_99895456
seq2: B6Ng01-233L04.g_66_1201 (reverse)

seq1  CAGCCA-TTCTGT--GGCCATGAGGTTA-TGAGACCAAGGAACCAAAGGG  46
      |||||| ||||||  | |||||||| || ||||||| | ||||||| |||
seq2  CAGCCATTTCTGTTGGCCCATGAGGCTATTGAGACCCA-GAACCAATGGG  49

seq1  TGAGGGACTGAGAATTTGAAAGTGCAAGAGATGGGGTTATTGAAGCCACT  96
      |||  |||||||||||   |||||| |||||||||  || ||||| ||||
seq2  TGA-CGACTGAGAATT--GAAGTGC-AGAGATGGG--TAATGAAG-CACT  92

seq1  GTTCGGTATTCGGTAAGGAGGAAGGTAAGGGGGTGAGGTGGGGGAGGTAG  146
      |||||||| || |||  ||| ||||||||||||||| ||||||   ||| 
seq2  GTTCGGTA-TCCGTA--GAGAAAGGTAAGGGGGTGA-GTGGGG--AGTA-  135

seq1  GAATAAAAACAGCCACTTCTTTTGGAAATAACTGCAAATGTGAAACTAGT  196
      |||| ||||||||||||   |||||||||||||||||||||| |||||||
seq2  GAAT-AAAACAGCCACT--CTTTGGAAATAACTGCAAATGTG-AACTAGT  181

seq1  GAACAGATTTTAAAAAGGACTAAACAAAAGGCAGTGTTTGGGTTGGTTCT  246
      ||||||||||| ||||||||||||| ||||||||||||| ||| ||||||
seq2  GAACAGATTTT-AAAAGGACTAAAC-AAAGGCAGTGTTT-GGTGGGTTCT  228

seq1  GGTTCTGGTACTCACCCACAACAATAACTTTGGACCAGTTCTGCTTGTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTTCTGGTACTCACCCACAACAATAACTTTGGACCAGTTCTGCTTGTC-  277

seq1  AAACTTTGGGCCAGGAAGCTTCTGCTCTTGGATTTATTTAACTGTGCCTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTGGGCCAGGAAGCTTCTGCTCTTGGATTTATTTAACTGTGCCTA  327

seq1  TGTTCCTCTTATCCCTAAATCTAAACCACACACTCATAACCCACCTTACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCTTATCCCTAAATCTAAACCACACACTCATAACCCACCTTACA  377

seq1  GTTTTACTGTCAAAACCTAGTTCTTTATGAAAGCTGAGTAGGACAGGGAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTGTCAAAACCTAGTTCTTTATGAAAGCTGAGTAGGACAGGGAC  427

seq1  ACAGCCTGGTTGTTGGAGTGCTTGCTAAGCAAGCATGAGAACCTGAGGGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGGTTGTTGGAGTGCTTGCTAAGCAAGCATGAGAACCTGAGGGC  477

seq1  AGATTCCTGGCACTCATGCCGGAAGCCAAGCGTGGTGGTAAATGCCTTGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTGGCACTCATGCCGGAAGCCAAGCGTGGTGGTAAATGCCTTGC  527

seq1  AGTCTTAACACTGGGGCAATGAAGAGCTGTCGGGAGAGACTCGGGTAGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTAACACTGGGGCAATGAAGAGCTGTCGGGAGAGACTCGGGTAGAT  577

seq1  CCCCCAAATTGCTAGCTAGACAGCCTAGCCAGTAATGGAGCCACAGGTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAATTGCTAGCTAGACAGCCTAGCCAGTAATGGAGCCACAGGTTC  627

seq1  AGTGAGAGAGTCTACCTCAAAACATACAGTGGAGGACAATTATTGAGGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGAGTCTACCTCAAAACATACAGTGGAGGACAATTATTGAGGAA  677

seq1  TACACCTGCTGCCAACCTCTGGCAGCCATACACAAGCATACACATCTGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTGCTGCCAACCTCTGGCAGCCATACACAAGCATACACATCTGAC  727

seq1  TCTGTAACCATCTCCAATATGTGGGAACTTATGCGTGCTGACACACAGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAACCATCTCCAATATGTGGGAACTTATGCGTGCTGACACACAGAA  777

seq1  AAGAAAAATAAATACACCAGCTTTTGTTTTTCTTTTAAACTTTGCTTAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATAAATACACCAGCTTTTGTTTTTCTTTTAAACTTTGCTTAAC  827

seq1  TCTTAAACATTGTTGTAAATGATAACCTTGGTGTGACCTAGCCTCAAAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAACATTGTTGTAAATGATAACCTTGGTGTGACCTAGCCTCAAAGA  877

seq1  ACCCCAGCATCACACATGCAGATGGTCCTAATGGGCTTTCCCTATCATCG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCATCACACATGCAGATGGTCCTAATGGGCTTTCCCTATCATCG  927

seq1  TTATTCTTGATGCTTTTGATGTAAAACCACTTAAAGACTCAGTCTGTGTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTGATGCTTTTGATGTAAAACCACTTAAAGACTCAGTCTGTGTA  977

seq1  GCCACCATAAGAAGAGGCCAGAACTAAATCTACCCAGATAAAGGCCTTGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATAAGAAGAGGCCAGAACTAAATCTACCCAGATAAAGGCCTTGC  1027

seq1  CCAGGATCCTACAGCTCAGTGGAGACCCTCTGGAACCAAGTCTCCCGTTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATCCTACAGCTCAGTGGAGACCCTCTGGAACCAAGTCTCCCGTTC  1077

seq1  CTAGTTCTAGTCCTTGTGTGCATGTGTGCATGAACAGTCATGTGTATGCA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTAGTCCTTGTGTGCATGTGTGCATGAACAGTCATGTGTATGCA  1127

seq1  GGTGAATTC  1155
      |||||||||
seq2  GGTGAATTC  1136