BAC Information

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BAC

Clone NameB6Ng01-234L15
Chromosome6 (Build37)
Map Location 6,279,251 - 6,395,924
singlet/doubletdoublet
Overlap geneEG667468, LOC667471, LOC100040096
Upstream geneAsb4, Pdk4, Dync1i1, Slc25a13, EG667462
Downstream geneShfm1, LOC545826, Dlx6as, Dlx5, Acn9, EG667500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234L15.bB6Ng01-234L15.g
ACCGA046409GA046410
length1,2021,089
definitionB6Ng01-234L15.b B6Ng01-234L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,279,251 - 6,279,897)(6,394,827 - 6,395,924)
sequence
gaattctgaaaacatgagttcaagaatctataaatcagtgtaagaactgt
tctttacaggatttctcaactatgtaaaatataaggaagcaatatgagtt
gtatgaggggcttcatggacctgaaagaacagaggatgtagcaataaatt
gtttaaaactctatgtttccagtgggtgcatgtgagtctctgcatccacc
aaagggctctggatttgtgaacgaaaaacatgcatcctttatatttaata
tgccttaactagcttactggttgggcacttccaaacctccctgttgttaa
cacacactcccctcccctctgatattcctgagttatcactttctaaatct
atattttgtctttgccaccctgtttccttctgggcagccctcccatgggg
ctgctttcccattgtacctacattcaccttctgctccttcaccgagtagt
ctgtcctatgcccctctcatggcagattcctttcttcctctctcctgtgt
ttattgcctgtgattcctaaaagtgctgtctctgtctctctgcccggcca
ttggcaaccttatttcgaaatctaatccaactgggggcaggtttccttta
gcctatgtgctggacattgtaaataggtttttgggtaacaaaattatcat
gagaacacaagccagtacaaaaggcagctgcactaatgagccagccagca
ttatcagaaagaaattaaggaaggagataaagaaatatagggacggtggt
ctcagggaaagatcttcccatctaaacttactgtttgtgtttgcagttga
acaagaaacagtttggacttttaatctagaatgaactacaatccagaaat
ggagggcatacttgttatccagatcttgaggttggaagatataagctttt
gatctggatcttgaggaacagtggccatgaacagcttagcccaggcacac
acctttaatttcagagacaaggcacgcagatttctgtgttctgggccatc
ctggacagagaaattctagggtttttttttttttttttttagttcttctt
ttttataacgcatacacaactacttgtcttcctggtttggtgaagcatta
gtcaaacaacacttgccacagtaatggctgtccaagtggcttccataaag
ctcagcacccattcgtcgaagaacctcctcgctaaattttgctcattttc
at

gaattccctctttcctagcagacctttgttcttctactcttttgtaatca
cagaatccacttactaaaattggtacctcatagcatactgaccttcagac
tataatggcttccttgggccatcactgctcacagggccaacaccttccag
actttcaacccccagtaaaggttacaagttttaaagcatgaatcttcatt
ctctttccacccaagcccaaagcgttagcccactctagggctttttagta
catgaaatgatatttttggaaatcaaatttatctctgagtagaaagaagg
acttttagaatatttaatatccctggatgatggccagatcatttcctgct
tatcggcagtcacagattgctttctaaccattgtcaaggaagagaagatt
aattttcgtttggtataaaaatacacatcaaaaattatagcaattgccta
aggtttgtggttagccctgatctctttctcttttgtactttcaaatattc
cagtgaataaatgcattaagtatacttaacatttaaatcagacttggttt
cacagttggaaaacatacgtgaataggaccaaaagaaaactccttgtgta
tatgtaggcgtttgtcagatgagcattttatgtagagcacagttaggatc
atccacaagcactttcagtcctccctgtaaccgcagcattaaaaggacat
gagacttttcgttcttgtgttacaatccagataaaatcagtccaggtgaa
acagctgacctgtaaaacagacctcaggtagtgctatgccttccaccgac
ctttccctctgtacaggactccattctcaaagcctttagtgccctaagat
tgatgtttccattccaggcagcagcagcaagaagggaaagaaagtcacgt
atgttatttttttttctcttctttcctttttttttttaagatggggtcta
ctgtagtctatgctggctggctggctgctggctgtgtagctgatgatgac
cctgactccagtccctcagcttctacttgctgagtcagagtacagagtag
ccaccatatcagtttatgtgacactggtgataaagccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_6279251_6279897
seq2: B6Ng01-234L15.b_608_1246

seq1  TTCGAAATCTAATCCAACTGGGGGCAGGTTTCCTTTAGCCTATGTGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAATCTAATCCAACTGGGGGCAGGTTTCCTTTAGCCTATGTGCTGG  50

seq1  ACATTGTAAATAGGTTTTTGGGTAACAAAATTATCATGAGAACACAAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTAAATAGGTTTTTGGGTAACAAAATTATCATGAGAACACAAGCC  100

seq1  AGTACAAAAGGCAGCTGCACTAATGAGCCAGCCAGCATTATCAGAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAAAGGCAGCTGCACTAATGAGCCAGCCAGCATTATCAGAAAGAA  150

seq1  ATTAAGGAAGGAGATAAAGAAATATAGGGACGGTGGTCTCAGGGAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGAAGGAGATAAAGAAATATAGGGACGGTGGTCTCAGGGAAAGAT  200

seq1  CTTCCCATCTAAACTTACTGTTTGTGTTTGCAGTTGAACAAGAAACAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCATCTAAACTTACTGTTTGTGTTTGCAGTTGAACAAGAAACAGTT  250

seq1  TGGACTTTTAATCTAGAATGAACTACAATCCAGAAATGGAGGGCATACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTTTAATCTAGAATGAACTACAATCCAGAAATGGAGGGCATACTT  300

seq1  GTTATCCAGATCTTGAGGTTGGAAGATATAAGCTTTTGATCTGGATCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCAGATCTTGAGGTTGGAAGATATAAGCTTTTGATCTGGATCTTG  350

seq1  AGGAACAGTGGCCATGAACAGCTTAGGCCCAGGCACACACCTTTAATTTC  400
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGAACAGTGGCCATGAACAGCTTA-GCCCAGGCACACACCTTTAATTTC  399

seq1  AGGAGACAAAGGCACGCAGATTTCTGTGTTCTGGGCCATCCTGGGACAGA  450
      | ||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  A-GAGAC-AAGGCACGCAGATTTCTGTGTTCTGGGCCATCCT-GGACAGA  446

seq1  GAAATTTCTAGGG-TTTTTTTTTTTTTTTTTTAGTTCCTTCTTTTTATTA  499
      |||| |||||||| |||||||||||||||||||||| |||||||||  ||
seq2  GAAA-TTCTAGGGTTTTTTTTTTTTTTTTTTTAGTT-CTTCTTTTTTATA  494

seq1  ACGCATACACAACTACTTGTCTT-CTGGTTTGTTGAAGCAATAAGTCAAA  548
      ||||||||||||||||||||||| |||||||| |||||| || |||||||
seq2  ACGCATACACAACTACTTGTCTTCCTGGTTTGGTGAAGC-ATTAGTCAAA  543

seq1  CAACACTTGCCACAGTAATGCCTGTCAAAGTGGCTTCCCATAAAAACTCC  598
      |||||||||||||||||||| ||||| ||||||||| |||| ||| || |
seq2  CAACACTTGCCACAGTAATGGCTGTCCAAGTGGCTT-CCAT-AAAGCT-C  590

seq1  AGCACCACATTCGTCAGAAGGACACTCTCGCT-AATTTTGC-CATTTTCA  646
      |||||| |||||||| |||| ||   |||||| |||||||| ||||||||
seq2  AGCACC-CATTCGTC-GAAGAACCTCCTCGCTAAATTTTGCTCATTTTCA  638

seq1  T  647
      |
seq2  T  639


seq1: chr6_6394827_6395924
seq2: B6Ng01-234L15.g_65_1153 (reverse)

seq1  TGGGCTTTATCACCAGTGTCACATAAAACTGGATATGGTGGCCTACTCCT  50
      |||||||||||||||||||||||| ||||| |||||||||| ||||| ||
seq2  TGGGCTTTATCACCAGTGTCACAT-AAACT-GATATGGTGG-CTACT-CT  46

seq1  GTTACTCTGGAACTCAGCAAGTAGAAGCTGAGGGACCTGGAGTTCAGGGT  100
      | |||||||  |||||||||||||||||||||||| |||||| |||||||
seq2  G-TACTCTG--ACTCAGCAAGTAGAAGCTGAGGGA-CTGGAG-TCAGGGT  91

seq1  CATCATCAGCTACACAGCCAGCCAGCCAGCCAGCCAGCATAGACTACAGT  150
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATCATCAGCTACACAGCCAG-CAGCCAGCCAGCCAGCATAGACTACAGT  140

seq1  AGACCCCATCTT-AAAAAAAAAAGGAAAGAAGAGAAAAAAAAATAACATA  199
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGACCCCATCTTAAAAAAAAAAAGGAAAGAAGAGAAAAAAAAATAACATA  190

seq1  CGTGACTTTCTTTCCCTTCTTGCTGCTGCTGCCTGGAATGGAAACATCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTTTCTTTCCCTTCTTGCTGCTGCTGCCTGGAATGGAAACATCAA  240

seq1  TCTTAGGGCACTAAAGGCTTTGAGAATGGAGTCCTGTACAGAGGGAAAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGGCACTAAAGGCTTTGAGAATGGAGTCCTGTACAGAGGGAAAGG  290

seq1  TCGGTGGAAGGCATAGCACTACCTGAGGTCTGTTTTACAGGTCAGCTGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGGAAGGCATAGCACTACCTGAGGTCTGTTTTACAGGTCAGCTGTT  340

seq1  TCACCTGGACTGATTTTATCTGGATTGTAACACAAGAACGAAAAGTCTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGGACTGATTTTATCTGGATTGTAACACAAGAACGAAAAGTCTCA  390

seq1  TGTCCTTTTAATGCTGCGGTTACAGGGAGGACTGAAAGTGCTTGTGGATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTTAATGCTGCGGTTACAGGGAGGACTGAAAGTGCTTGTGGATG  440

seq1  ATCCTAACTGTGCTCTACATAAAATGCTCATCTGACAAACGCCTACATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAACTGTGCTCTACATAAAATGCTCATCTGACAAACGCCTACATAT  490

seq1  ACACAAGGAGTTTTCTTTTGGTCCTATTCACGTATGTTTTCCAACTGTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGAGTTTTCTTTTGGTCCTATTCACGTATGTTTTCCAACTGTGA  540

seq1  AACCAAGTCTGATTTAAATGTTAAGTATACTTAATGCATTTATTCACTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGTCTGATTTAAATGTTAAGTATACTTAATGCATTTATTCACTGG  590

seq1  AATATTTGAAAGTACAAAAGAGAAAGAGATCAGGGCTAACCACAAACCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGAAAGTACAAAAGAGAAAGAGATCAGGGCTAACCACAAACCTT  640

seq1  AGGCAATTGCTATAATTTTTGATGTGTATTTTTATACCAAACGAAAATTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATTGCTATAATTTTTGATGTGTATTTTTATACCAAACGAAAATTA  690

seq1  ATCTTCTCTTCCTTGACAATGGTTAGAAAGCAATCTGTGACTGCCGATAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCTTCCTTGACAATGGTTAGAAAGCAATCTGTGACTGCCGATAA  740

seq1  GCAGGAAATGATCTGGCCATCATCCAGGGATATTAAATATTCTAAAAGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAATGATCTGGCCATCATCCAGGGATATTAAATATTCTAAAAGTC  790

seq1  CTTCTTTCTACTCAGAGATAAATTTGATTTCCAAAAATATCATTTCATGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTACTCAGAGATAAATTTGATTTCCAAAAATATCATTTCATGT  840

seq1  ACTAAAAAGCCCTAGAGTGGGCTAACGCTTTGGGCTTGGGTGGAAAGAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAGCCCTAGAGTGGGCTAACGCTTTGGGCTTGGGTGGAAAGAGA  890

seq1  ATGAAGATTCATGCTTTAAAACTTGTAACCTTTACTGGGGGTTGAAAGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGATTCATGCTTTAAAACTTGTAACCTTTACTGGGGGTTGAAAGTC  940

seq1  TGGAAGGTGTTGGCCCTGTGAGCAGTGATGGCCCAAGGAAGCCATTATAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGTGTTGGCCCTGTGAGCAGTGATGGCCCAAGGAAGCCATTATAG  990

seq1  TCTGAAGGTCAGTATGCTATGAGGTACCAATTTTAGTAAGTGGATTCTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGTCAGTATGCTATGAGGTACCAATTTTAGTAAGTGGATTCTGT  1040

seq1  GATTACAAAAGAGTAGAAGAACAAAGGTCTGCTAGGAAAGAGGGAATTC  1098
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAAAAGAGTAGAAGAACAAAGGTCTGCTAGGAAAGAGGGAATTC  1089


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