BAC Information

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BAC

Clone NameB6Ng01-235A13
Chromosome6 (Build37)
Map Location 130,129,637 - 130,179,307
singlet/doubletdoublet
Overlap geneLOC100038894, Klra9, Klra7
Upstream geneClec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449
Downstream geneLOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235A13.bB6Ng01-235A13.g
ACCGA046618GA046619
length9401,165
definitionB6Ng01-235A13.b B6Ng01-235A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,129,637 - 130,130,580)(130,178,102 - 130,179,307)
sequence
gaattccctgtctgcaacagaactctaatttctgcaggatgatattttag
ggaccataactatctttctgttaaaaaaaaagtcagctatataaaaaagt
aaattataacacagacaaattaccacaaaaacaggagcactgtgcattct
gggacacatgggctacatagcaaaatgaagtaaaaaggtaattatttaat
aattgataattaagattatcttgtataaatcaacagaaatgagatttctc
ctcaagttgaggtgttaggaggaattggacaaatctcagatggtcaggga
agcactgttgctagtttttcccaaaaagcagaactaaggaatgtactcaa
aacgaagatcctcaataataaattcagccatgcattgtgggacacaatcc
atcatcccagttgtgaggagatgacggtagatggatcacagttcaaggtt
aaccttcaatacagaggtagtttgaggctatcctgggttaatgagactct
gtcacatgagagaaagagtgtgaaatccactgaaaccacatggaactgcc
aaaggatgagtcgttagcaaaataaaacattttggaattttggatttagg
atgaagaaaaatagaatattcatattcatcaaatttaggaatggtgaaaa
aaagaaataatcagataaaatgaaaaatatatgttttggattctgagtgt
tcaaagacaaaggaagattgtgaactggaaaataggtaatgggaaagaat
aaaggatgtgtaaacttaaaccaagtgtgtatataggctttaaggaaaac
cactacttagtaaacttatagttgaccaagaccaacagactccatatttc
tttggtggtttagagtcttgtgtgtgtgtgtgtgtgtgtgtaattttttg
cgtgtatgcttgttgtttggaggggtaaatttgtctattg
gaattcatgaccttctttttacatttcttcaatattttttgaggctatgc
ttaagtaaaaataattcatctgtatagaggtattaaaggttaaaattaat
tgaatttctctacattaacagaggaaagcacttccaggctctgctaaaat
attactatgaatgcggatatattgcagtacatatgctccaataagaattg
tgccatttcttaatctgttttattacttcacattttcatagtgtgttaca
tattcactgaatattttacttaggtaattatttgtaaatttgtgttgtaa
atatgaagtgaatggaagttacttccactgtaattttattcagctatatg
ctttgttttagagtaaacttaacttagtgaattattgaagtatctttttt
tatagtgacttaaatgaagggccaatttataaatgttaatgtaccaatga
aagtaatgatatctgttgggtatcaacatgcagctttttctctaacctta
aatttcattatgtacttctcataagcatttttgatattaaactgtgacta
acttagtttttcagcatagtcaacaaaaacatgaactacaggaaactcta
aattgccacgataactgcagccccacgcaaagtgacgtcaacttgaagga
tgaactgctgagaaataagtctatagagtgtaggccaggcaatgatcttc
tggaatccctcagcagggatcagaacagatggtacagtgaaaccaagact
ttttcagattcctcacagcacacaggtatgttgcataggaagaccataaa
tacagaactgtattattaccgtttatttgttctctggaagctttgaagtc
caaccagcagcttaagacactggtgatctttgggtttattttggggttcc
ttatttcatgtagagatcaggaaactcagaagttcatctttgggattagg
agaacattatagtttctaaaagtcagttctgttttgcagtcctactctct
ctggggagcgattacaaaatcagtacttttgaaattttttaatgttgtca
tggacatctcactttgttgctgacgaatatgagtttttagtgtgtattta
tgacctattacctaaagtggatagagcctatgcatgacctcagaccattt
gggtgtgtgcgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_130129637_130130580
seq2: B6Ng01-235A13.b_45_984

seq1  GAATTCCCTGTCTGCAACAGAACTCTAATTTCTGCAGGATGATATTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTCTGCAACAGAACTCTAATTTCTGCAGGATGATATTTTAG  50

seq1  GGACCATAACTATCTTTCTGTTAAAAAAAAAGTCAGCTATATAAAAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATAACTATCTTTCTGTTAAAAAAAAAGTCAGCTATATAAAAAAGT  100

seq1  AAATTATAACACAGACAAATTACCACAAAAACAGGAGCACTGTGCATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAACACAGACAAATTACCACAAAAACAGGAGCACTGTGCATTCT  150

seq1  GGGACACATGGGCTACATAGCAAAATGAAGTAAAAAGGTAATTATTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACATGGGCTACATAGCAAAATGAAGTAAAAAGGTAATTATTTAAT  200

seq1  AATTGATAATTAAGATTATCTTGTATAAATCAACAGAAATGAGATTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATAATTAAGATTATCTTGTATAAATCAACAGAAATGAGATTTCTC  250

seq1  CTCAAGTTGAGGTGTTAGGAGGAATTGGACAAATCTCAGATGGTCAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTTGAGGTGTTAGGAGGAATTGGACAAATCTCAGATGGTCAGGGA  300

seq1  AGCACTGTTGCTAGTTTTTCCCAAAAAGCAGAACTAAGGAATGTACTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTTGCTAGTTTTTCCCAAAAAGCAGAACTAAGGAATGTACTCAA  350

seq1  AACGAAGATCCTCAATAATAAATTCAGCCATGCATTGTGGGACACAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAGATCCTCAATAATAAATTCAGCCATGCATTGTGGGACACAATCC  400

seq1  ATCATCCCAGTTGTGAGGAGATGACGGTAGATGGATCACAGTTCAAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCCAGTTGTGAGGAGATGACGGTAGATGGATCACAGTTCAAGGTT  450

seq1  AACCTTCAATACAGAGGTAGTTTGAGGCTATCCTGGGTTAATGAGACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCAATACAGAGGTAGTTTGAGGCTATCCTGGGTTAATGAGACTCT  500

seq1  GTCACATGAGAGAAAGAGTGTGAAATCCACTGAAACCACATGGAACTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATGAGAGAAAGAGTGTGAAATCCACTGAAACCACATGGAACTGCC  550

seq1  AAAGGATGAGTCGTTAGCAAAATAAAACATTTTGGAATTTTGGATTTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGAGTCGTTAGCAAAATAAAACATTTTGGAATTTTGGATTTAGG  600

seq1  ATGAAGAAAAATAGAATATTCATATTCATCAAATTTAGGAATGGTGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAAAATAGAATATTCATATTCATCAAATTTAGGAATGGTGAAAA  650

seq1  AAAGAAATAATCAGATAAAATGAAAAATATATGTTTTGGATTCTGAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATAATCAGATAAAATGAAAAATATATGTTTTGGATTCTGAGTGT  700

seq1  TCAAAGACAAAGGAAGATTGTGAACTGGAAAATAGGTAATGGGAAAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACAAAGGAAGATTGTGAACTGGAAAATAGGTAATGGGAAAGAAT  750

seq1  AAAGGATGTGTAAACTTAAACCAAGTGTGTATATAGGCTTTAAGGAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGTGTAAACTTAAACCAAGTGTGTATATAGGCTTTAAGGAAAAC  800

seq1  CACTACTTAGTAAACTTATAGTTGACCAAGACCAACAGACTCCATATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTTAGTAAACTTATAGTTGACCAAGACCAACAGACTCCATATTTC  850

seq1  TTTGGTGGTTTAGAGTCTTGTGTGTGTGTGTGTGTGTGTGTAATTTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGGTTTAGAGTCTTGTGTGTGTGTGTGTGTGTGTGTAATTTTTTG  900

seq1  CGTGTATGCTTGTTTGTTTTGGAGGGGTAAATTTTGTCTTATTG  944
      ||||||||||||||   |||||||||||||| |||||| |||||
seq2  CGTGTATGCTTGTT--GTTTGGAGGGGTAAA-TTTGTC-TATTG  940

seq1: chr6_130178102_130179307
seq2: B6Ng01-235A13.g_68_1232 (reverse)

seq1  CATACGCACACACACACACACCCACACACCCACAAATTGTTCTTAAAGGT  50
                      || || |||||||||   || || ||| |   | 
seq2  ----------------CATACGCACACACCC---AAATGGTCTGA---GG  28

seq1  TCATCCAATAAATGCTCTAATCTACTTTAGTGTAATAGTTCATAAATACA  100
      |||| |   | | ||||| ||| ||||||| ||||||| |||||||||||
seq2  TCATGC---ATAGGCTCT-ATCCACTTTAG-GTAATAGGTCATAAATACA  73

seq1  CACTAAAAACTTCCATATTCTGTCAGCAACAAAGTTGGAGATGTTCCAAT  150
      |||||||||||  ||||||| ||||||||||||||  |||||||  | ||
seq2  CACTAAAAACT--CATATTC-GTCAGCAACAAAGT--GAGATGT--CCAT  116

seq1  GGACCAAAACAATTAAAAAATTTCAAAAGTACTGATTTTGTAATTCGCTC  200
      |    | ||| |||||||||||||||||||||||||||||||| ||||||
seq2  G----ACAAC-ATTAAAAAATTTCAAAAGTACTGATTTTGTAA-TCGCTC  160

seq1  CCCAGAGGAGAGTAGGACTGCAAAACAGAACCTGACTTTTAGAAACTATA  250
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  CCCAGA-GAGAGTAGGACTGCAAAACAGAA-CTGACTTTTAGAAACTATA  208

seq1  ATGTTCTCCTAAT-CCAAAGATGAACTTCTGAGTTTCCTGATCTCTACAT  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCCTAATCCCAAAGATGAACTTCTGAGTTTCCTGATCTCTACAT  258

seq1  GAAATAAGGAACCCCAAAATAAACCCAAAGATCACCAGTGTCTTAAGCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGGAACCCCAAAATAAACCCAAAGATCACCAGTGTCTTAAGCTG  308

seq1  CTGGTTGGACTTCAAAGCTTCCAGAGAACAAATAAACGGTAATAATACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGGACTTCAAAGCTTCCAGAGAACAAATAAACGGTAATAATACAG  358

seq1  TTCTGTATTTATGGTCTTCCTATGCAACATACCTGTGTGCTGTGAGGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATTTATGGTCTTCCTATGCAACATACCTGTGTGCTGTGAGGAAT  408

seq1  CTGAAAAAGTCTTGGTTTCACTGTACCATCTGTTCTGATCCCTGCTGAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAAGTCTTGGTTTCACTGTACCATCTGTTCTGATCCCTGCTGAGG  458

seq1  GATTCCAGAAGATCATTGCCTGGCCTACACTCTATAGACTTATTTCTCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAGAAGATCATTGCCTGGCCTACACTCTATAGACTTATTTCTCAG  508

seq1  CAGTTCATCCTTCAAGTTGACGTCACTTTGCGTGGGGCTGCAGTTATCGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCATCCTTCAAGTTGACGTCACTTTGCGTGGGGCTGCAGTTATCGT  558

seq1  GGCAATTTAGAGTTTCCTGTAGTTCATGTTTTTGTTGACTATGCTGAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTTAGAGTTTCCTGTAGTTCATGTTTTTGTTGACTATGCTGAAAA  608

seq1  ACTAAGTTAGTCACAGTTTAATATCAAAAATGCTTATGAGAAGTACATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTTAGTCACAGTTTAATATCAAAAATGCTTATGAGAAGTACATAA  658

seq1  TGAAATTTAAGGTTAGAGAAAAAGCTGCATGTTGATACCCAACAGATATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTAAGGTTAGAGAAAAAGCTGCATGTTGATACCCAACAGATATC  708

seq1  ATTACTTTCATTGGTACATTAACATTTATAAATTGGCCCTTCATTTAAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTTCATTGGTACATTAACATTTATAAATTGGCCCTTCATTTAAGT  758

seq1  CACTATAAAAAAAGATACTTCAATAATTCACTAAGTTAAGTTTACTCTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAAAAAAAGATACTTCAATAATTCACTAAGTTAAGTTTACTCTAA  808

seq1  AACAAAGCATATAGCTGAATAAAATTACAGTGGAAGTAACTTCCATTCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCATATAGCTGAATAAAATTACAGTGGAAGTAACTTCCATTCAC  858

seq1  TTCATATTTACAACACAAATTTACAAATAATTACCTAAGTAAAATATTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTTACAACACAAATTTACAAATAATTACCTAAGTAAAATATTCA  908

seq1  GTGAATATGTAACACACTATGAAAATGTGAAGTAATAAAACAGATTAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATATGTAACACACTATGAAAATGTGAAGTAATAAAACAGATTAAGA  958

seq1  AATGGCACAATTCTTATTGGAGCATATGTACTGCAATATATCCGCATTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCACAATTCTTATTGGAGCATATGTACTGCAATATATCCGCATTCA  1008

seq1  TAGTAATATTTTAGCAGAGCCTGGAAGTGCTTTCCTCTGTTAATGTAGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATATTTTAGCAGAGCCTGGAAGTGCTTTCCTCTGTTAATGTAGAG  1058

seq1  AAATTCAATTAATTTTAACCTTTAATACCTCTATACAGATGAATTATTTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAATTAATTTTAACCTTTAATACCTCTATACAGATGAATTATTTT  1108

seq1  TACTTAAGCATAGCCTCAAAAAATATTGAAGAAATGTAAAAAGAAGGTCA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAGCATAGCCTCAAAAAATATTGAAGAAATGTAAAAAGAAGGTCA  1158

seq1  TGAATTC  1206
      |||||||
seq2  TGAATTC  1165