BAC Information

Click to search

BAC

Clone NameB6Ng01-235E02
Chromosome6 (Build37)
Map Location 15,303,777 - 15,304,621
singlet/doubletsinglet
Overlap geneFoxp2
Upstream geneLOC667797, Ppp1r3a, LOC100040568
Downstream geneMdfic, LOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235E02.bB6Ng01-235E02.g
ACCGA046775GA046776
length1,2031,009
definitionB6Ng01-235E02.b B6Ng01-235E02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctttgggtatttcactttggactcttattaaatgcaactgccag
ccacatgctctgtggattcctctgtatttagtgcctgccagtaagtgctg
tgttgagattcacctatggtatccccatccttctgaccacaaggggccag
gtttttgaccatcatgtatgcatctgcaagtcttatctaactttgttttt
acttctattattatagaatgaagtttgttatgtgcacagctttaatccag
taacatatacatagaggacataaaatccatcctgctaagtgtctatctct
gttgcattaagtacacccacaatgctgtgcaacaaccatttatacaattt
tctcatcattccagatggtgggattgcaagctggtacaaccactaaggaa
atcagtatggcagtttctcaggaaactggacatagtactacctgaggaca
cagctataccactcctggacatatacccagaatatgctccaacatgtaat
aagggcatatgctccactatgttcatagcagccttatttataatagctag
aaactgaaaacaatccagatgtccttgaacagaggaatgtatacagaaaa
tgtggtgtatttacacaatgtaatactactcagctattaaaaaagatgaa
ttcatgaagttcttaggcaaatggatggaactagaaaacatcatcctgag
tgaggtatcccaatcccaaagaccacacatggtatgtgctcatggataaa
tggatattagcccagaagtttggaatgctcaagatacaatttatagacca
catgaaattcaagaagaaggaagaccacaatgtggatactttggtcttct
tagaagggtgatcaaaatacccatgagaggagatataaattttggagcaa
aaactgaaagaaaggccatccagtgactgtcccacctggggatccatccc
atatacagctctcaaacccagacactattgtggatgtcacaagtgcttgc
taacagagactgataatagctatctctgagaagctttgccagtgcctgaa
cactacagaagggatggtccacagccatccattgatgagcaacggtccca
atttgaggagctagagaacgaccaaagaagcctgaaggttgcaaccctag
gagaacaccacttgacccaccaggtaccccctcagagacccctcatgagg
gtc

gaattcagtgctccaatcagcccaaagatctttttatgagaaactttcta
gttcaattttgtcaatacatatgggactttttggatttactccaactttt
gataaagtattttttcaggattttgaccaacttacctagtatgaaattca
ctgaaattaattttcataacattcttttgttttaatacctgtaccatgac
tgctagctttttttcaaattttcagtcctaatactggttatttcattttt
ataaaaggtcaatattgacataattaccacaattcttctttcaaagttta
tcattttacttatttttctactacattctttaaaactcatgaatagacct
ttaaaataatttatatccacttttagcaaaaccattttaggtatactagg
aaagaaataaagcaggcagaaagtagagttttagatacatattctacctg
gcttcctaatttatttttgagttaacttcttgctttgatgtgatatattt
gttacagctgatgaaccaatattaatacactgttattaagtgaagcctga
agggtggattaggatttgtgccgttttttacagttctttgcattttgaca
aattttaatgccttgtgttcattataatatgaaatgtagcagaaactgaa
acatctcctgtttcccatatttatccaccctctattttccaatcccaaga
agccactgatcttttcaacatagcaattgttccatctgttctagaatgcc
atatggttaaaaccatacagtgtggccttttcagcacgacttcttttcct
taataatatgcctttggggtttctctatctattcatggcataaccgttat
ttctttttaccttttcattcagaaaaaaagaaagaaaagaaagaaaaact
cacattgtatgtatatccccagagtttgattgtctcactcactgaaagaa
catcttgattgcttcaagttaactaattattaataaagctgctataacca
cagcatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_15303777_15304621
seq2: B6Ng01-235E02.g_69_913

seq1  GAATTCAGTGCTCCAATCAGCCCAAAGATCTTTTTATGAGAAACTTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTCCAATCAGCCCAAAGATCTTTTTATGAGAAACTTTCTA  50

seq1  GTTCAATTTTGTCAATACATATGGGACTTTTTGGATTTACTCCAACTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTTTGTCAATACATATGGGACTTTTTGGATTTACTCCAACTTTT  100

seq1  GATAAAGTATTTTTTCAGGATTTTGACCAACTTACCTAGTATGAAATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGTATTTTTTCAGGATTTTGACCAACTTACCTAGTATGAAATTCA  150

seq1  CTGAAATTAATTTTCATAACATTCTTTTGTTTTAATACCTGTACCATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTAATTTTCATAACATTCTTTTGTTTTAATACCTGTACCATGAC  200

seq1  TGCTAGCTTTTTTTCAAATTTTCAGTCCTAATACTGGTTATTTCATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCTTTTTTTCAAATTTTCAGTCCTAATACTGGTTATTTCATTTTT  250

seq1  ATAAAAGGTCAATATTGACATAATTACCACAATTCTTCTTTCAAAGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGTCAATATTGACATAATTACCACAATTCTTCTTTCAAAGTTTA  300

seq1  TCATTTTACTTATTTTTCTACTACATTCTTTAAAACTCATGAATAGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTACTTATTTTTCTACTACATTCTTTAAAACTCATGAATAGACCT  350

seq1  TTAAAATAATTTATATCCACTTTTAGCAAAACCATTTTAGGTATACTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAATTTATATCCACTTTTAGCAAAACCATTTTAGGTATACTAGG  400

seq1  AAAGAAATAAAGCAGGCAGAAAGTAGAGTTTTAGATACATATTCTACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATAAAGCAGGCAGAAAGTAGAGTTTTAGATACATATTCTACCTG  450

seq1  GCTTCCTAATTTATTTTTGAGTTAACTTCTTGCTTTGATGTGATATATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTAATTTATTTTTGAGTTAACTTCTTGCTTTGATGTGATATATTT  500

seq1  GTTACAGCTGATGAACCAATATTAATACACTGTTATTAAGTGAAGCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGCTGATGAACCAATATTAATACACTGTTATTAAGTGAAGCCTGA  550

seq1  AGGGTGGATTAGGATTTGTGCCGTTTTTTACAGTTCTTTGCATTTTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGATTAGGATTTGTGCCGTTTTTTACAGTTCTTTGCATTTTGACA  600

seq1  AATTTTAATGCCTTGTGTTCATTATAATATGAAATGTAGCAGAAACTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAATGCCTTGTGTTCATTATAATATGAAATGTAGCAGAAACTGAA  650

seq1  ACATCTCCTGTTTCCCATATTTATCCACCCTCTATTTTCCAATCCCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCCTGTTTCCCATATTTATCCACCCTCTATTTTCCAATCCCAAGA  700

seq1  AGCCACTGATCTTTTCAACATAGCAATTGTTCCATCTGTTCTAGAATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGATCTTTTCAACATAGCAATTGTTCCATCTGTTCTAGAATGCC  750

seq1  ATATGGTTAAAACCATACAGTGTGGCCTTTTCAGCACGACTTCTTTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTAAAACCATACAGTGTGGCCTTTTCAGCACGACTTCTTTTCCT  800

seq1  TAATAATATGCCTTTGGGGTTTCTCTATCTATTCATGGCATAACC  845
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATATGCCTTTGGGGTTTCTCTATCTATTCATGGCATAACC  845


| Home | SequenceCutter | Blast | Download |