BAC Information

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BAC

Clone NameB6Ng01-235H19
Chromosome6 (Build37)
Map Location 109,510,588 - 109,678,751
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235H19.bB6Ng01-235H19.g
ACCGA046952GA046953
length1,1771,173
definitionB6Ng01-235H19.b B6Ng01-235H19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,677,553 - 109,678,751)(109,510,588 - 109,511,775)
sequence
gaattcaaaagaaaaattgcacaggaaaaccaaaagtcaaatgatgcagg
gggtaaaaaatcaataagcaggattacagctccatgaaaagcctcaccaa
cagaaaggaccatatgaaaaaccatgtcagagccagaagaccagatggag
aaatttgttctcattgtaaatatcaatgagtatttttaaaaaatatgaat
agaacatggaactactctaagataacacaaaagaaaaagtctttcagcta
ttttcatagaagaaggagtatactgcaccaaaagcatagaaaattttttc
aataaaatattcaataaatatttcaataaaattatagaacaaaaagaatt
caactctaggaaaagagatgtccaaccaggtataagagccaattaagtac
caacagacaagacaaaaaaaaaaaaaaaactcccaatcacatattattaa
aaacaaaaaatcaaaaacaatgacaaaagtgagtattaaaaatattaaga
caaaatggtcaaattaaagcttgtccaccagaatcacacttgatttttta
aaagatatatttaagaccaaaatcagcctggaaaatgtatgccaggcttg
gaacaactatgattgacaatgcagactattattctcagcagaaaaatatc
tattcaaatttaaggataaatacctaacatgataaaaactgattgaagga
atttataaccactaaatcagcactgtagaagttactggaatgactactac
tgtgtgaagaaaagaattaacacacccacaaggccacaagaattaattat
gagaagacaatcaagaagagtctaagaaaatgcagcaaaatctacgaaat
gatttaaaacaatacacatcttttaacaataaaggtgatcttcctgtccc
aataaaagacacacagtagcaacttaattcagaaaacaatattcatcttt
ttttaaattagatattttctttatttacatttcaaatgtatccccttctg
ggttcccctttcaaatatccgctatccctctcccctccctttctcaccaa
cacacccactctgctctgtaaaacagatgtatacacttgtatgtaatatg
acccaggattagatgggggaatcttaggaggagaaatggtgcctatccgg
agtagattgacgtggggtggaatatgg

gaattcccaaggggtcttcaccccagaggagaagggaagtggggatggga
ggaagcaactgtgtgagaggggaaaagggacgaggtaacaatcaggatgt
acagtgaatgaatgaatgaataaacgaatgaatgaatgaattaataaaaa
gaattgaagttttctagttcctgaaattaaataattgccaaattatttat
ccaaaacctagtccgaataatcacattatgattttggccatgtgttgcag
tctagtttcatatttgagctggtctcaagctttgttagctggtgaccatg
agaaagcatgggtttgttttgtatagcaaatgtcagcatcctttctcagt
ttaggagtagattcccatttgagagagatgggctagagggcaggttctct
ttaacttgctaaaaaacataagctttaaacaaactttgtttatgctggga
agttccacttgagacaagaaggccattgacaccttgaagcagaccttcaa
aacgggttgaaaatatttaacagtttatacctggggatttagatcaactt
ttgactttcttttactctttgacagaataatcctaccatagtctcccttt
gacaaaaaaataacatttttcacacacacacacacacacagagagagaga
gacagagagagacagagagagacagagagagacagagagagacagagaca
cagagacacaaagacagagagacaaagagagagacagagagcctcacata
tacacatatatgtgatttatgtgtataaaatgatgctgacttcactcatc
tgactattgacaatgaccattcttcaaagtgtcccagattgttttgagag
gcctcaaatttgtgttctatatctgataagataccattttgtctacaaag
caattagctatcacctttcttctttttttcttggtctagttaccatataa
ctgctcaagtcaacttgctgggctttgttgtgagtaatggacctctaact
aagctgaaagacatatctgcatctataaacatgtattaaagttgtgtgta
gtcatctagggcacaccatggtatagcaacaatagcctgcaatttagcct
attgttctattgcttcatcagtaagtaatgatatcagcatttctggtaat
tccttggtctttcttccgagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_109677553_109678751
seq2: B6Ng01-235H19.b_44_1220 (reverse)

seq1  CCATATTCCCCCTCCATTACTCACCCCACATCTATATTCTTCTTCCGATT  50
      ||||||||             |||||||| ||   | ||| || | ||| 
seq2  CCATATTC-------------CACCCCACGTC---AATCTACTCCGGATA  34

seq1  AGCACCCTTTCTCTTCCTAATTATTCCACCATCTAAATCTGTGTCATA-T  99
       ||||| |||||| ||||||  ||||| ||||||||  ||| |||||| |
seq2  GGCACCATTTCTCCTCCTAA-GATTCCCCCATCTAATCCTGGGTCATATT  83

seq1  ACATACAAGTGTATACATCTGTTTTACAGGAAGCAGGAGTGGGTGTGTTG  149
      |||||||||||||||||||||||||||||  |||| ||||||||||||||
seq2  ACATACAAGTGTATACATCTGTTTTACAG--AGCA-GAGTGGGTGTGTTG  130

seq1  GTGAGAAAGGGAAGGGGAGAGGGAATAGCGGATATTTGAAGGGGAAACCA  199
      ||||||||||| ||||||||||| |||||||||||||||| ||| |||| 
seq2  GTGAGAAAGGG-AGGGGAGAGGG-ATAGCGGATATTTGAAAGGGGAACCC  178

seq1  AGAAAGGGGATAACATTTGAAATGTAAATAAAGAAAATATCTAATTT-AA  248
      || |||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  AG-AAGGGGAT-ACATTTGAAATGTAAATAAAGAAAATATCTAATTTAAA  226

seq1  AAAAGATGAATATTGTTTTCTGAATTAAGTTGCTACTGTGTGTCTTTTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGAATATTGTTTTCTGAATTAAGTTGCTACTGTGTGTCTTTTAT  276

seq1  TGGGACAGGAAGATCACCTTTATTGTTAAAAGATGTGTATTGTTTTAAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGGAAGATCACCTTTATTGTTAAAAGATGTGTATTGTTTTAAAT  326

seq1  CATTTCGTAGATTTTGCTGCATTTTCTTAGACTCTTCTTGATTGTCTTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCGTAGATTTTGCTGCATTTTCTTAGACTCTTCTTGATTGTCTTCT  376

seq1  CATAATTAATTCTTGTGGCCTTGTGGGTGTGTTAATTCTTTTCTTCACAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTAATTCTTGTGGCCTTGTGGGTGTGTTAATTCTTTTCTTCACAC  426

seq1  AGTAGTAGTCATTCCAGTAACTTCTACAGTGCTGATTTAGTGGTTATAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAGTCATTCCAGTAACTTCTACAGTGCTGATTTAGTGGTTATAAA  476

seq1  TTCCTTCAATCAGTTTTTATCATGTTAGGTATTTATCCTTAAATTTGAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCAATCAGTTTTTATCATGTTAGGTATTTATCCTTAAATTTGAAT  526

seq1  AGATATTTTTCTGCTGAGAATAATAGTCTGCATTGTCAATCATAGTTGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTTCTGCTGAGAATAATAGTCTGCATTGTCAATCATAGTTGTT  576

seq1  CCAAGCCTGGCATACATTTTCCAGGCTGATTTTGGTCTTAAATATATCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTGGCATACATTTTCCAGGCTGATTTTGGTCTTAAATATATCTT  626

seq1  TTAAAAAATCAAGTGTGATTCTGGTGGACAAGCTTTAATTTGACCATTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATCAAGTGTGATTCTGGTGGACAAGCTTTAATTTGACCATTTT  676

seq1  GTCTTAATATTTTTAATACTCACTTTTGTCATTGTTTTTGATTTTTTGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAATATTTTTAATACTCACTTTTGTCATTGTTTTTGATTTTTTGTT  726

seq1  TTTAATAATATGTGATTGGGAGTTTTTTTTTTTTTTTTGTCTTGTCTGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAATATGTGATTGGGAGTTTTTTTTTTTTTTTTGTCTTGTCTGTT  776

seq1  GGTACTTAATTGGCTCTTATACCTGGTTGGACATCTCTTTTCCTAGAGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTAATTGGCTCTTATACCTGGTTGGACATCTCTTTTCCTAGAGTT  826

seq1  GAATTCTTTTTGTTCTATAATTTTATTGAAATATTTATTGAATATTTTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGTTCTATAATTTTATTGAAATATTTATTGAATATTTTAT  876

seq1  TGAAAAAATTTTCTATGCTTTTGGTGCAGTATACTCCTTCTTCTATGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAATTTTCTATGCTTTTGGTGCAGTATACTCCTTCTTCTATGAAA  926

seq1  ATAGCTGAAAGACTTTTTCTTTTGTGTTATCTTAGAGTAGTTCCATGTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGAAAGACTTTTTCTTTTGTGTTATCTTAGAGTAGTTCCATGTTC  976

seq1  TATTCATATTTTTTAAAAATACTCATTGATATTTACAATGAGAACAAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATATTTTTTAAAAATACTCATTGATATTTACAATGAGAACAAATT  1026

seq1  TCTCCATCTGGTCTTCTGGCTCTGACATGGTTTTTCATATGGTCCTTTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCTGGTCTTCTGGCTCTGACATGGTTTTTCATATGGTCCTTTCT  1076

seq1  GTTGGTGAGGCTTTTCATGGAGCTGTAATCCTGCTTATTGATTTTTTACC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGAGGCTTTTCATGGAGCTGTAATCCTGCTTATTGATTTTTTACC  1126

seq1  CCCTGCATCATTTGACTTTTGGTTTTCCTGTGCAATTTTTCTTTTGAATT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCATCATTTGACTTTTGGTTTTCCTGTGCAATTTTTCTTTTGAATT  1176

seq1  C  1199
      |
seq2  C  1177


seq1: chr6_109510588_109511775
seq2: B6Ng01-235H19.g_64_1236

seq1  GAATTCCCAAGGGGTCTTCACCCCAGAGGAGAAGGGAAGTGGGGATGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGGGGTCTTCACCCCAGAGGAGAAGGGAAGTGGGGATGGGA  50

seq1  GGAAGCAACTGTGTGAGAGGGGAAAAGGGACGAGGTAACAATCAGGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAACTGTGTGAGAGGGGAAAAGGGACGAGGTAACAATCAGGATGT  100

seq1  ACAGTGAATGAATGAATGAATAAACGAATGAATGAATGAATTAATAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAATGAATGAATGAATAAACGAATGAATGAATGAATTAATAAAAA  150

seq1  GAATTGAAGTTTTCTAGTTCCTGAAATTAAATAATTGCCAAATTATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAAGTTTTCTAGTTCCTGAAATTAAATAATTGCCAAATTATTTAT  200

seq1  CCAAAACCTAGTCCGAATAATCACATTATGATTTTGGCCATGTGTTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACCTAGTCCGAATAATCACATTATGATTTTGGCCATGTGTTGCAG  250

seq1  TCTAGTTTCATATTTGAGCTGGTCTCAAGCTTTGTTAGCTGGTGACCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTTCATATTTGAGCTGGTCTCAAGCTTTGTTAGCTGGTGACCATG  300

seq1  AGAAAGCATGGGTTTGTTTTGTATAGCAAATGTCAGCATCCTTTCTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCATGGGTTTGTTTTGTATAGCAAATGTCAGCATCCTTTCTCAGT  350

seq1  TTAGGAGTAGATTCCCATTTGAGAGAGATGGGCTAGAGGGCAGGTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGTAGATTCCCATTTGAGAGAGATGGGCTAGAGGGCAGGTTCTCT  400

seq1  TTAACTTGCTAAAAAACATAAGCTTTAAACAAACTTTGTTTATGCTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTGCTAAAAAACATAAGCTTTAAACAAACTTTGTTTATGCTGGGA  450

seq1  AGTTCCACTTGAGACAAGAAGGCCATTGACACCTTGAAGCAGACCTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACTTGAGACAAGAAGGCCATTGACACCTTGAAGCAGACCTTCAA  500

seq1  AACGGGTTGAAAATATTTAACAGTTTATACCTGGGGATTTAGATCAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGTTGAAAATATTTAACAGTTTATACCTGGGGATTTAGATCAACTT  550

seq1  TTGACTTTCTTTTACTCTTTGACAGAATAATCCTACCATAGTCTCCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTTCTTTTACTCTTTGACAGAATAATCCTACCATAGTCTCCCTTT  600

seq1  GACAAAAAAATAACATTTTTCACACACACACACACACACAGAGAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAAAATAACATTTTTCACACACACACACACACACAGAGAGAGAGA  650

seq1  GACAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGACA  700

seq1  CAGAGACACAAAGACAGAGAGACAAAGAGAGAGACAGAGAGCCTCACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACAAAGACAGAGAGACAAAGAGAGAGACAGAGAGCCTCACATA  750

seq1  TACACATATATGTGATTTATGTGTATAAAATGATGCTGACTTCACTCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATATATGTGATTTATGTGTATAAAATGATGCTGACTTCACTCATC  800

seq1  TGACTATTGACAATGACCATTCTTCAAAGTGTCCCAGATTGTTTTGAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATTGACAATGACCATTCTTCAAAGTGTCCCAGATTGTTTTGAGAG  850

seq1  GCCTCAAATTTGTGTTCTATATCTGATAAGATACCATTTTGTCTACAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAATTTGTGTTCTATATCTGATAAGATACCATTTTGTCTACAAAG  900

seq1  CAATTAGCTATCACCTTTCTTCTTTTTTTCTTGGTCTAGTTACCATATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGCTATCACCTTTCTTCTTTTTTTCTTGGTCTAGTTACCATATAA  950

seq1  CTGCTCAAGTCAACTTGCTGGGCTTTGTTGTGAGTAATGGAACCTCTAAC  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGCTCAAGTCAACTTGCTGGGCTTTGTTGTGAGTAATGG-ACCTCTAAC  999

seq1  TAAGCTGAAAGACATATCTGCATTCCTATAAACATGTATTAAAGTTTGTG  1050
      |||||||||||||||||||||||  ||||||||||||||||||| |||||
seq2  TAAGCTGAAAGACATATCTGCAT--CTATAAACATGTATTAAAG-TTGTG  1046

seq1  TGTTAGTCATCTTAGGGCAACACCATTGTATTAGCAACAAATAGGCCTGG  1100
      || |||||||| |||||| ||||||| ||| ||||||| |||| |||| |
seq2  TG-TAGTCATC-TAGGGC-ACACCATGGTA-TAGCAAC-AATA-GCCT-G  1089

seq1  AAATTTAGCTATTTGTTCCTATTGCTTTTCATCAGT-AGTAATGATAATC  1149
       ||||||||   ||||| |||||||  ||||||||| ||||||||||   
seq2  CAATTTAGCCTATTGTT-CTATTGC--TTCATCAGTAAGTAATGATA---  1133

seq1  CCAGCATTTTCTGTATTTCCTTGTTCTTTTCTTC--AGTTT  1188
       ||||||||   ||| ||||||| || |||||||  |||||
seq2  TCAGCATTTCTGGTAATTCCTTGGTC-TTTCTTCCGAGTTT  1173


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