BAC Information

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BAC

Clone NameB6Ng01-235I05
Chromosome6 (Build37)
Map Location 41,004,807 - 41,005,805
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790
Downstream geneTcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235I05.bB6Ng01-235I05.g
ACCGA046972GA046973
length1,207998
definitionB6Ng01-235I05.b B6Ng01-235I05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaaaattgaatttaaaagccagaagagcctgggcagatgtctt
tcagactctaagagaccacaaatgtcagcccatacctagcaaaatgttca
gtcatcatagatggagatattccatgagaatacaaaatttaaagaaaatc
tttccactaatccactcctacataagatagaagaataaaaacttcaaccc
aagatgcattcaaatatacccaagaaacacataatttcataccagtaagg
tcaaaggaacacacacacacacacacacacacacacacacacacacacat
acacacactacaattgacaacatcaaagtaacaggaattaacagatggac
ctaaaaattatctataaaactattcacccaaacacaaaagagttcacctt
attcttagcacctcaaagaccttttccaaaattgaccatataatcagtta
caaagcaagccttaacagatacgaaaatatttaaataatgtcttgcatct
tatcagatcactatagattaaaactagacatttatgacatcagaaacagg
acagaaagactgcagattcatggatactgaaaacactgtactttattttc
aacaaatggtgctggcacaactggatatcatgtagaagaattcaaattga
tccattcttatctccttgcacaaagctcaagtctaagtggatcaaggaac
tccacataaaaccagagacactgaaacttatagagcagaaagtggggaaa
agccttgggcacaggggaaaaattcctgaacacaacagcaatggcttgtg
ctgtaagatagagaatcgacaaatgggacctcataaaattgcaaagcttc
tgtaaggcaaaggacactgtcaataagataagacagcaaccaacatatta
ggaaaagatctttaccagtcctaaatctgatagaggactaatatcaaata
tatataaagaactcagaagctgggcctccagaaatcaaataccctattaa
aatggggtacagagctgaacaaagaattctcacctgagatactgaatggc
tgaaaaacacctgaaaatgtcacatctatcatcaggaatgcataaacacc
tgagaataaacctccacaccattcgaattgcttagatcaaatccaggtaa
gcaagtctggtagcatgtgggaaaagtgcaaaaccctcctcccattgtct
cgtgtga
gaattcttttaggccttcctcagaagtctgaatctcattgccacagctcc
cccttgtggccagtggaatgaaaagcattcttaatcttttttcttccttc
ttggagcccgttgatgatttttgttttacaaatatataccacctcaaggt
tgaggttatgcgacagaatcaaaagagtgaagacattcaaaaaagacact
gtatattatctacctccctttggctttcataagaatgaaacaatggactt
caagatattaaactactgggaatcatacaggacctaccagaaggaaaact
tttctcccagaaagagatttgcacgttatcagactatacttttcagaaag
atggagctaaaacagtgatgggcaggatcacatttgatggaggttgttta
gatatgcatacctctggccctctgtttaaagctgaaactaaactgcttta
tcggaagcctgaagatggactcaaggagtcactggattttttttcttttt
cttttcttttttttttttttttggaccctcttcccaatgtgagcacagtg
aataaattccccctttctgcttcttatgattcaaacaaaatacaaaagaa
agcaaagaggataggaactctaacaggaagaccaacagagcccattaacc
tggacctttggggctctcaatgtctgaatcaccaatcaaagaacatacat
gagctggacctaggtttccccacacatatgtagcagatgtgcatcttggc
cttcgtgagggtcccaaataattggaacaggagctatcacaaaagctgtt
gcctgtacgtgggatatgttcttcaagctgggctgtcttctctggcctca
gtaggagaggctgcacctagcctcagagagactcgaagtgccgggatgag
ggggacactcaggaggtgtcctcactcactcagaggcaaaggggatgggg
gaaggggtgaccaagaagagggcagtgagagagggaggtaagtgagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_41004807_41005805
seq2: B6Ng01-235I05.g_68_1065 (reverse)

seq1  TACTCACTTTACCTCCCTCTCTCACTGCCCTCTTCTTGGTCACCCCCTTC  50
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  TACTCAC-TTACCTCCCTCTCTCACTGCCCTCTTCTTGGTCA-CCCCTTC  48

seq1  CCCCATCCCCTTTGCCTCTGAGTGGGTG-GGACACCTCCTGAGTGTCCCC  99
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  CCCCATCCCCTTTGCCTCTGAGTGAGTGAGGACACCTCCTGAGTGTCCCC  98

seq1  CTCATCCCGGCACTTCGAGTCTCTCTGAGGCTAGGTGCAGCCTCTCCTAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCCGGCACTTCGAGTCTCTCTGAGGCTAGGTGCAGCCTCTCCTAC  148

seq1  TGAGGCCAGAGAAGACAGCCCAGCTTGAAGAACATATCCCACGTACAGGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCAGAGAAGACAGCCCAGCTTGAAGAACATATCCCACGTACAGGC  198

seq1  AACAGCTTTTGTGATAGCTCCTGTTCCAATTATTTGGGACCCTCACGAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTTTTGTGATAGCTCCTGTTCCAATTATTTGGGACCCTCACGAAG  248

seq1  GCCAAGATGCACATCTGCTACATATGTGTGGGGAAACCTAGGTCCAGCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGATGCACATCTGCTACATATGTGTGGGGAAACCTAGGTCCAGCTC  298

seq1  ATGTATGTTCTTTGATTGGTGATTCAGACATTGAGAGCCCCAAAGGTCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTTCTTTGATTGGTGATTCAGACATTGAGAGCCCCAAAGGTCCA  348

seq1  GGTTAATGGGCTCTGTTGGTCTTCCTGTTAGAGTTCCTATCCTCTTTGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATGGGCTCTGTTGGTCTTCCTGTTAGAGTTCCTATCCTCTTTGCT  398

seq1  TTCTTTTGTATTTTGTTTGAATCATAAGAAGCAGAAAGGGGGAATTTATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGTATTTTGTTTGAATCATAAGAAGCAGAAAGGGGGAATTTATT  448

seq1  CACTGTGCTCACATTGGGAAGAGGGTCCAAAAAAAAAAAAAAAAGAAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGCTCACATTGGGAAGAGGGTCCAAAAAAAAAAAAAAAAGAAAAG  498

seq1  AAAAAGAAAAAAAATCCAGTGACTCCTTGAGTCCATCTTCAGGCTTCCGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAAAAATCCAGTGACTCCTTGAGTCCATCTTCAGGCTTCCGA  548

seq1  TAAAGCAGTTTAGTTTCAGCTTTAAACAGAGGGCCAGAGGTATGCATATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGTTTAGTTTCAGCTTTAAACAGAGGGCCAGAGGTATGCATATC  598

seq1  TAAACAACCTCCATCAAATGTGATCCTGCCCATCACTGTTTTAGCTCCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAACCTCCATCAAATGTGATCCTGCCCATCACTGTTTTAGCTCCAT  648

seq1  CTTTCTGAAAAGTATAGTCTGATAACGTGCAAATCTCTTTCTGGGAGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGAAAAGTATAGTCTGATAACGTGCAAATCTCTTTCTGGGAGAAA  698

seq1  AGTTTTCCTTCTGGTAGGTCCTGTATGATTCCCAGTAGTTTAATATCTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCCTTCTGGTAGGTCCTGTATGATTCCCAGTAGTTTAATATCTTG  748

seq1  AAGTCCATTGTTTCATTCTTATGAAAGCCAAAGGGAGGTAGATAATATAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATTGTTTCATTCTTATGAAAGCCAAAGGGAGGTAGATAATATAC  798

seq1  AGTGTCTTTTTTGAATGTCTTCACTCTTTTGATTCTGTCGCATAACCTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTTTTTGAATGTCTTCACTCTTTTGATTCTGTCGCATAACCTCA  848

seq1  ACCTTGAGGTGGTATATATTTGTAAAACAAAAATCATCAACGGGCTCCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAGGTGGTATATATTTGTAAAACAAAAATCATCAACGGGCTCCAA  898

seq1  GAAGGAAGAAAAAAGATTAAGAATGCTTTTCATTCCACTGGCCACAAGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAAAAAAGATTAAGAATGCTTTTCATTCCACTGGCCACAAGGG  948

seq1  GGAGCTGTGGCAATGAGATTCAGACTTCTGAGGAAGGCCTAAAAGAATTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGTGGCAATGAGATTCAGACTTCTGAGGAAGGCCTAAAAGAATTC  998