BAC Information

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BAC

Clone NameB6Ng01-236I20
Chromosome6 (Build37)
Map Location 82,747,691 - 82,748,774
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1, Pole4, LOC100043412, Hk2
Downstream geneEG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236I20.bB6Ng01-236I20.g
ACCGA047742GA047743
length1,1081,168
definitionB6Ng01-236I20.b B6Ng01-236I20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacagaggtaagggttggacttgcctgttaacctctgcatgtca
actggatacagtctgtacactctctgtatccttgatgcaggagtggatag
atgaatgaatatttacaggaccaggggaagggggccggccttacagggtc
agggaaagatgtctctaggatcagcaagtgtatctctgagaggcccagcc
atcagagcccccagaactgtgtgctcactgttcttcaagtgggataaata
ttaacacagcacattcgccctgaaggtgaaccctgcacagatggccttat
ctgttgatataatcattagaaatgtgaacgagagatgaggattcttggcc
agctccttgttgagcactgactctgtcctctgattctctgttctctcaaa
ttcctgagttctgtcttcagtccctgcccccctggccctggccctgcccc
tacccccacccccacccaccttcccttggttctgtcttttctctgtctct
acccctgtctctctttttgtctgtgtgtctgtctgtctatctgtgtctct
gtctcccttggttctgtcttttctctatgtctgcctgtgccgtgtctgtg
tctctgcctctgtctctgtgtgtctgtgtgacgctgtgtctctgtctagg
tctcactctcagtcactatctcttctctatgtccagaggacactttttct
ttatggcctctgtattccagaaggatttcaacactctggtctctgtctta
ggtcattctcagctccagggctccttgcgttttcttggtcctggagactg
gagacccccccactgctccctgaccttctgcctagcttgagctcctatga
ctcgcctgtctcctcagccagatatctattcctctcaggctttatgcagt
gattctctctctctttctctctctctccttctctctcaatgggaggactt
tttcatttctcatgtctttgtccatctgaggagttcagacattactttat
cccaaatgccttagaaaacattttttcactcaagtagaaaacctcctttt
ctcttgtgtagacccttttctgcttccttcattaaaccttcccgttttga
aaaatgcc
gaattctcaccggaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctcccaa
tggaggagctagagaagtacccaaggagctaagggatcttcaacctatag
gtggaacacattatgactaccagtaccctgagctctgactctagctgcat
atgtatcaaagatgcctagtcgccatcactggtaagagagtcaatgtcac
gcgaactttggtgtccgtacagaacgtccagcctaagaggggaaagtcgt
gctggctacattactgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_82747691_82748774
seq2: B6Ng01-236I20.b_49_1156 (reverse)

seq1  GGCA-TTTTCAAAA-GGGAA-GTTTAATG-AGGAAGCAGAAAAGGG-CT-  44
      |||| ||||||||| ||||| |||||||| |||||||||||||||| || 
seq2  GGCATTTTTCAAAACGGGAAGGTTTAATGAAGGAAGCAGAAAAGGGTCTA  50

seq1  CAC-AGAG-AAAGGAGGTTTTCT-CTT--GTGAAAAATGTTTTTCTAA-G  88
      ||| |||| |||||||||||||| |||  ||||||||   |||||||| |
seq2  CACAAGAGAAAAGGAGGTTTTCTACTTGAGTGAAAAAATGTTTTCTAAGG  100

seq1  CATTTGGGATAAAGTAATGTCTG-ACTCCTCAGAT-GACAAAGACATGAG  136
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  CATTTGGGATAAAGTAATGTCTGAACTCCTCAGATGGACAAAGACATGAG  150

seq1  AAATGAAAAAGTCCT-CCATTGAGAGAGAAAGAGAGAGAGAGAAAGAGAG  185
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  AAATGAAAAAGTCCTCCCATTGAGAGAGAAGGAGAGAGAGAGAAAGAGAG  200

seq1  AGAGAATCACTGCATAAAGCCTGAG-GGAATAGGTATCTGGCTGAGGAGA  234
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  AGAGAATCACTGCATAAAGCCTGAGAGGAATAGATATCTGGCTGAGGAGA  250

seq1  CAGGCGAGTCATAGGAGCTCAAGCTAGGCAG-AGGTCAGGGAGCAGT-GG  282
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  CAGGCGAGTCATAGGAGCTCAAGCTAGGCAGAAGGTCAGGGAGCAGTGGG  300

seq1  GGGGTCTCCAGTCTCCAGGACCA--GAAACGC-AGGAG-CCTGGAGCTGA  328
      |||||||||||||||||||||||   |||||| ||||| |||||||||||
seq2  GGGGTCTCCAGTCTCCAGGACCAAGAAAACGCAAGGAGCCCTGGAGCTGA  350

seq1  G-ATGACCT-AGACAGGGACCAGAGTGTTGAAATCCTTCTGGAATACAGA  376
      | ||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  GAATGACCTAAGACAGAGACCAGAGTGTTGAAATCCTTCTGGAATACAGA  400

seq1  GGCCATAAAGAAAAAGTGTCCTCTGGACATAGAGAAGAGATAGTGACTGA  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAAAGAAAAAGTGTCCTCTGGACATAGAGAAGAGATAGTGACTGA  450

seq1  GAGTGAGACCTAGACAGAGACACAGCGTCACACAGACACACAGAGACAGA  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGACCTAGACAGAGACACAGCGTCACACAGACACACAGAGACAGA  500

seq1  GGCAGAGACACAGACACGGCACAGGCAGACATAGAGAAAAGACAGAACCA  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGACACAGACACGGCACAGGCAGACATAGAGAAAAGACAGAACCA  550

seq1  AGGGAGACAGAGACACAGATAGACAGACAGACACACAGACAAAAAGAGAG  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACAGAGACACAGATAGACAGACAGACACACAGACAAAAAGAGAG  600

seq1  ACAGGGGTAGAGACAGAGAAAAGACAGAACCAAGGGAAGGTGGGTGGGGG  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGTAGAGACAGAGAAAAGACAGAACCAAGGGAAGGTGGGTGGGGG  650

seq1  TGGGGGTAGGGGCAGGGCCAGGGCCAGGGGGGCAGGGACTGAAGACAGAA  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTAGGGGCAGGGCCAGGGCCAGGGGGGCAGGGACTGAAGACAGAA  700

seq1  CTCAGGAATTTGAGAGAACAGAGAATCAGAGGACAGAGTCAGTGCTCAAC  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAATTTGAGAGAACAGAGAATCAGAGGACAGAGTCAGTGCTCAAC  750

seq1  AAGGAGCTGGCCAAGAATCCTCATCTCTCGTTCACATTTCTAATGATTAT  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTGGCCAAGAATCCTCATCTCTCGTTCACATTTCTAATGATTAT  800

seq1  ATCAACAGATAAGGCCATCTGTGCAGGGTTCACCTTCAGGGCGAATGTGC  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAGATAAGGCCATCTGTGCAGGGTTCACCTTCAGGGCGAATGTGC  850

seq1  TGTGTTAATATTTATCCCACTTGAAGAACAGTGAGCACACAGTTCTGGGG  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAATATTTATCCCACTTGAAGAACAGTGAGCACACAGTTCTGGGG  900

seq1  GCTCTGATGGCTGGGCCTCTCAGAGATACACTTGCTGATCCTAGAGACAT  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATGGCTGGGCCTCTCAGAGATACACTTGCTGATCCTAGAGACAT  950

seq1  CTTTCCCTGACCCTGTAAGGCCGGCCCCCTTCCCCTGGTCCTGTAAATAT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTGACCCTGTAAGGCCGGCCCCCTTCCCCTGGTCCTGTAAATAT  1000

seq1  TCATTCATCTATCCACTCCTGCATCAAGGATACAGAGAGTGTACAGACTG  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATCTATCCACTCCTGCATCAAGGATACAGAGAGTGTACAGACTG  1050

seq1  TATCCAGTTGACATGCAGAGGTTAACAGGCAAGTCCAACCCTTACCTCTG  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGTTGACATGCAGAGGTTAACAGGCAAGTCCAACCCTTACCTCTG  1100

seq1  TGGAATTC  1084
      ||||||||
seq2  TGGAATTC  1108