BAC Information

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BAC

Clone NameB6Ng01-236L01
Chromosome6 (Build37)
Map Location 87,102,512 - 87,260,471
singlet/doubletdoublet
Overlap geneAntxr1
Upstream geneTgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e
Downstream geneGkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236L01.bB6Ng01-236L01.g
ACCGA047848GA047849
length1,0871,078
definitionB6Ng01-236L01.b B6Ng01-236L01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,102,512 - 87,103,594)(87,259,385 - 87,260,471)
sequence
gaattcagtcatgaactcaaataaccctgagactcctgggagaggaaagg
tgacctcatgcttactaagacccaggttgctcagccctggaggaccccgc
tgtgaacggcagcggtttggctcagtgtcccctctgaggctgtggtcgct
gacccctcccatttaactaaggaagaggttcccgaggctgacagatgtgg
ctgacagatgtggctgggtaggaggcagaggaacgcagctgtgagaagtg
atggccctgggcccagaagccttgtcttcttgtggctgcagccatttcca
cctggtgcctttgtgttttctagtgcccccctctttcaaagctcagcact
ttgttgtagtatatggtctggaagaagcttctggaacagtaccaggcacc
tccccgtgttccgttagtaggctgactggggagctgaggaaggaggccgt
ggcgctgcagagggacctggggtttaacgtcacctctgtgtgcctctgct
cagctcacgccccacctccgtcctgtctcttcctatctcactgtttatga
ggagtgcagccttctctgtcacgtgctcgcagtattctacccaggcagtg
ggaccagccaaactgaggctgaaacttctgaaagggtgagccatagcgaa
cttcctcttttaaggtagctttctgaagtgtttgtcacgacgatgaaagc
agacacggttgtgggtgtgggggaccctcagacatcttgtcttgagatct
gacaccctgttctgggccctacacagatggcgtgtttcagactactccca
agtttcacagttaaaaattgaggagtcctttaggttctcatactgagatg
ttcttaagatgccggcaccgttagcaaggggaagtccctagatatggcca
ctgaggagtgaaggattatcagagtacttatctatactttttaaagctgt
gccatgggctttggagggccgtcacatccagtgttggtaaacgtctgtgg
aaagggatttgaggacgggacaggcaagagatgaagtatagagagcacgg
aggggctggttgggtgggatctcacatggatctgagc
gaattcactattactggggtgtaaactgatgcagatactatggaaaaaag
tgtgggagtctctcaaaaagctgagtggatgattttatttatcctataaa
tagcatagtgttgggtagagggaaccatgtgtctcaggattcccattgct
gggaagaaatcatggcaactctaataaaacaaaaacatttaaatgagact
ggcttacagtttcagaggtttagtccaataacgtcatggcaggaagcatg
gtagcatacaggccaatatggtgttggagactgagccaagaggtctacat
ctttttttttcttaaagatttatttattttatgtatgagtacactgtcgc
tgtcttcacacataccagaagagggcattggatcccattgcagatggtta
gccatcatgtggttgctgggaattgaactcaggacctctggaagagcagt
cagtgttcttaactgctgaggcatctctccagccccaagagttctacatc
ttgatctacaggcagcagaagactgacttatagtgggcagagtttgagca
tatgtgagacctcaaaacccacccctagtgacacacttcctccaacaagg
tcacttactccaacaaggccacacttcctaatagcgccactctttaggct
aagcattcaaatgtataaatatatgggggccatacctattcaaaccatgg
tggctgatacttgcacaaatatgtcactactgattgcagagggatccttt
taacttgaaatccttttcctttcctttattctgaccacccctcagcttcc
caagaatgattctcatctgtctcccaacccacacctcatatccatcactc
ttagaaaaaaaaacccatttcctagtcactgagagcctagaggacagcag
acagatgctgcctcagcacccaatcctgttcctatgagttgcaatcatgc
ctttcctgccattctggagggccagatgccccctttaggccattgtccct
ctttgtccatccatgccattgtctctagtctctgtatttttatctcctct
acttctacttctgctgactccctcaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87102512_87103594
seq2: B6Ng01-236L01.b_44_1130

seq1  GAATTCAGTCATGAACTCAAATAACCCTGAGACTCCTGGGAGAGGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCATGAACTCAAATAACCCTGAGACTCCTGGGAGAGGAAAGG  50

seq1  TGACCTCATGCTTACTAAGACCCAGGTTGCTCAGCCCTGGAGGACCCCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCATGCTTACTAAGACCCAGGTTGCTCAGCCCTGGAGGACCCCGC  100

seq1  TGTGAACGGCAGCGGTTTGGCTCAGTGTCCCCTCTGAGGCTGTGGTCGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACGGCAGCGGTTTGGCTCAGTGTCCCCTCTGAGGCTGTGGTCGCT  150

seq1  GACCCCTCCCATTTAACTAAGGAAGAGGTTCCCGAGGCTGACAGATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTCCCATTTAACTAAGGAAGAGGTTCCCGAGGCTGACAGATGTGG  200

seq1  CTGACAGATGTGGCTGGGTAGGAGGCAGAGGAACGCAGCTGTGAGAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGATGTGGCTGGGTAGGAGGCAGAGGAACGCAGCTGTGAGAAGTG  250

seq1  ATGGCCCTGGGCCCAGAAGCCTTGTCTTCTTGTGGCTGCAGCCATTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCTGGGCCCAGAAGCCTTGTCTTCTTGTGGCTGCAGCCATTTCCA  300

seq1  CCTGGTGCCTTTGTGTTTTCTAGTGCCCCCCTCTTTCAAAGCTCAGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGCCTTTGTGTTTTCTAGTGCCCCCCTCTTTCAAAGCTCAGCACT  350

seq1  TTGTTGTAGTATATGGTCTGGAAGAAGCTTCTGGAACAGTACCAGGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTAGTATATGGTCTGGAAGAAGCTTCTGGAACAGTACCAGGCACC  400

seq1  TCCCCGTGTTCCGTTAGTAGGCTGACTGGGGAGCTGAGGAAGGAGGCCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGTGTTCCGTTAGTAGGCTGACTGGGGAGCTGAGGAAGGAGGCCGT  450

seq1  GGCGCTGCAGAGGGACCTGGGGTTTAACGTCACCTCTGTGTGCCTCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTGCAGAGGGACCTGGGGTTTAACGTCACCTCTGTGTGCCTCTGCT  500

seq1  CAGCTCACGCCCCACCTCCGTCCTGTCTCTTCCTATCTCACTGTTTATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACGCCCCACCTCCGTCCTGTCTCTTCCTATCTCACTGTTTATGA  550

seq1  GGAGTGCAGCCTTCTCTGTCACGTGCTCGCAGTATTCTACCCAGGCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCAGCCTTCTCTGTCACGTGCTCGCAGTATTCTACCCAGGCAGTG  600

seq1  GGACCAGCCAAACTGAGGCTGAAACTTCTGAAAGGGTGAGCCATAGCGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGCCAAACTGAGGCTGAAACTTCTGAAAGGGTGAGCCATAGCGAA  650

seq1  CTTCCTCTTTTAAGGTAGCTTTCTGAAGTGTTTGTCACGACGATGAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTTTTAAGGTAGCTTTCTGAAGTGTTTGTCACGACGATGAAAGC  700

seq1  AGACACGGTTGTGGGTGTGGGGGACCCTCAGACATCTTGTCTTGAGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACGGTTGTGGGTGTGGGGGACCCTCAGACATCTTGTCTTGAGATCT  750

seq1  GACACCCTGTTCTGGGCCCTACACAGATGGCGTG-TTCAGACTACTCCCA  799
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACACCCTGTTCTGGGCCCTACACAGATGGCGTGTTTCAGACTACTCCCA  800

seq1  AGTTTCACAGTTAAAAATTGAGGAGTCCTTTAGGTTCTCATACTGAGATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCACAGTTAAAAATTGAGGAGTCCTTTAGGTTCTCATACTGAGATG  850

seq1  TTCTTAAGATGCCGGCA-CGTTAGCAAGGGGAAGTCCCTAGATATGGCCA  898
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTCTTAAGATGCCGGCACCGTTAGCAAGGGGAAGTCCCTAGATATGGCCA  900

seq1  CTGAGGAGTGAAGGATTATCAGAGTACTTATCTATACTTTTTAAAGCTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGTGAAGGATTATCAGAGTACTTATCTATACTTTTTAAAGCTGT  950

seq1  GCCATGGGCTTT-GAGGGCCGTCACATCCAGTGTTGGTAAACGTCTGTGG  997
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCCATGGGCTTTGGAGGGCCGTCACATCCAGTGTTGGTAAACGTCTGTGG  1000

seq1  AAAGGGATTTGAGGACGGGACAGGCAAAGAGATGAAGGTATAGAGAGCAC  1047
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  AAAGGGATTTGAGGACGGGACAGGC-AAGAGATGAA-GTATAGAGAGCAC  1048

seq1  GGA-GGGCTGGTTGGGT-GGTTCTCACATGG-TCTGAGC  1083
      ||| ||||||||||||| || |||||||||| |||||||
seq2  GGAGGGGCTGGTTGGGTGGGATCTCACATGGATCTGAGC  1087

seq1: chr6_87259385_87260471
seq2: B6Ng01-236L01.g_65_1142 (reverse)

seq1  GGGTGAGGGAGTCAGCAAGGAAGTAGAAGTTAGAAGAAGAATAAAAAATA  50
      |||||||||||||||||  |||||||||||    ||| ||   |||||||
seq2  GGGTGAGGGAGTCAGCA--GAAGTAGAAGT----AGAGGAGATAAAAATA  44

seq1  CAAGAGACTAGAGACAATGGCATGGGATGGACAAAGAGGGACAATGGCCT  100
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  C-AGAGACTAGAGACAATGGCAT-GGATGGACAAAGAGGGACAATGGCCT  92

seq1  AAAGGGGGGCATCTGGCCCTCCAGAATGGCAGGAAAGGCATGATTGCAAC  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAA-GGGGGCATCTGGCCCTCCAGAATGGCAGGAAAGGCATGATTGCAAC  141

seq1  TCATAGGAACAGGATTGGGTGCTGAGGCAGCATCTGTCTGCTGTCCTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGAACAGGATTGGGTGCTGAGGCAGCATCTGTCTGCTGTCCTCTA  191

seq1  GGCTCTCAGTGACTAGGAAATGGGTTTTTTTTTCTAAGAGTGATGGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCAGTGACTAGGAAATGGGTTTTTTTTTCTAAGAGTGATGGATAT  241

seq1  GAGGTGTGGGTTGGGAGACAGATGAGAATCATTCTTGGGAAGCTGAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTGGGTTGGGAGACAGATGAGAATCATTCTTGGGAAGCTGAGGGG  291

seq1  TGGTCAGAATAAAGGAAAGGAAAAGGATTTCAAGTTAAAAGGATCCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGAATAAAGGAAAGGAAAAGGATTTCAAGTTAAAAGGATCCCTCT  341

seq1  GCAATCAGTAGTGACATATTTGTGCAAGTATCAGCCACCATGGTTTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCAGTAGTGACATATTTGTGCAAGTATCAGCCACCATGGTTTGAAT  391

seq1  AGGTATGGCCCCCATATATTTATACATTTGAATGCTTAGCCTAAAGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGGCCCCCATATATTTATACATTTGAATGCTTAGCCTAAAGAGTG  441

seq1  GCGCTATTAGGAAGTGTGGCCTTGTTGGAGTAAGTGACCTTGTTGGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTATTAGGAAGTGTGGCCTTGTTGGAGTAAGTGACCTTGTTGGAGGA  491

seq1  AGTGTGTCACTAGGGGTGGGTTTTGAGGTCTCACATATGCTCAAACTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCACTAGGGGTGGGTTTTGAGGTCTCACATATGCTCAAACTCTG  541

seq1  CCCACTATAAGTCAGTCTTCTGCTGCCTGTAGATCAAGATGTAGAACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTATAAGTCAGTCTTCTGCTGCCTGTAGATCAAGATGTAGAACTCT  591

seq1  TGGGGCTGGAGAGATGCCTCAGCAGTTAAGAACACTGACTGCTCTTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGGAGAGATGCCTCAGCAGTTAAGAACACTGACTGCTCTTCCAG  641

seq1  AGGTCCTGAGTTCAATTCCCAGCAACCACATGATGGCTAACCATCTGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGAGTTCAATTCCCAGCAACCACATGATGGCTAACCATCTGCAA  691

seq1  TGGGATCCAATGCCCTCTTCTGGTATGTGTGAAGACAGCGACAGTGTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCCAATGCCCTCTTCTGGTATGTGTGAAGACAGCGACAGTGTACT  741

seq1  CATACATAAAATAAATAAATCTTTAAGAAAAAAAAAGATGTAGACCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATAAAATAAATAAATCTTTAAGAAAAAAAAAGATGTAGACCTCTT  791

seq1  GGCTCAGTCTCCAACACCATATTGGCCTGTATGCTACCATGCTTCCTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTCTCCAACACCATATTGGCCTGTATGCTACCATGCTTCCTGCC  841

seq1  ATGACGTTATTGGACTAAACCTCTGAAACTGTAAGCCAGTCTCATTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGTTATTGGACTAAACCTCTGAAACTGTAAGCCAGTCTCATTTAAA  891

seq1  TGTTTTTGTTTTATTAGAGTTGCCATGATTTCTTCCCAGCAATGGGAATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTTATTAGAGTTGCCATGATTTCTTCCCAGCAATGGGAATC  941

seq1  CTGAGACACATGGTTCCCTCTACCCAACACTATGCTATTTATAGGATAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACACATGGTTCCCTCTACCCAACACTATGCTATTTATAGGATAAA  991

seq1  TAAAATCATCCACTCAGCTTTTTGAGAGACTCCCACACTTTTTTCCATAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCATCCACTCAGCTTTTTGAGAGACTCCCACACTTTTTTCCATAG  1041

seq1  TATCTGCATCAGTTTACACCCCAGTAATAGTGAATTC  1087
      |||||||||||||||||||||||||||||||||||||
seq2  TATCTGCATCAGTTTACACCCCAGTAATAGTGAATTC  1078