BAC Information

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BAC

Clone NameB6Ng01-237P07
Chromosome6 (Build37)
Map Location 129,221,505 - 129,315,755
singlet/doubletdoublet
Overlap geneCd69, 4922502D21Rik, Clec12a
Upstream geneTead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d
Downstream gene4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237P07.bB6Ng01-237P07.g
ACCGA048779GA048780
length1,147281
definitionB6Ng01-237P07.b B6Ng01-237P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,314,602 - 129,315,755)(129,221,505 - 129,221,785)
sequence
gaattctttggaaactcagaacattctgcggatcatgatgttgaaggtca
ttaagaaaagatgaaagattgagggagcctgtggaagaaagctatgaact
taccatgacctgtggatggtacagagtacacaatgttttttccatatgtt
tgcggtctggaccaaattgcaggaactggtaagtggatgcacttggaagg
aaggacatgaaggcaacaccatggatggtgtgtccaaatcatttctgtgg
gaaaggcaaaggcctaggaagaatattcttgtctcttttcacatgaccaa
agatgataagacataacaccaagtatattcttttgctgtgattgtaaaac
ctactcaacaccaggtacttccaagaagactgacctctaaccttcaggtc
cccctcacaaattggagacgaaaagccaccttgtgtcttgattgctttaa
taatacaaatgagaagtgctttgatcgctctactcctgaacccaaatgtg
tggcatcccctggtgtccccacatggatctctggtattttcttcagtcca
cttggcctcactaaccagggtgggttagcaatagatactcccatctattg
tcctcccagctttggtctaattctgatctttgcccagcttcattttttaa
catccattggtgttctgctcttcgtattaataatgacgaatgaagtgatt
taataacgttcattcttatcttattctaaaactaggaatatgttttctct
tgctagaactatgatgttaattcaaacttcagagttttgttcatttgctt
gctgtttatttcatgtcaaagcttgattgtatttgggaaatctactccta
gtttattaagctttattacgacagggtataaagtactcatcaaatgcttc
gctatgtcaattgcaaagtttattttccctcacatctttttaagtattta
tacatctttaatacaaattgttcttatcgtactatgctttctatattttc
cagactttattttctttgagttgaatttgcctggttttatctttgggaaa
aaaaaaagagagattagctgcattgtcttgtgttcagcgcattgtatgcc
tgaaatacatgtgaaagctatgaacttagtatcctggcagttcagca
aggctgtaagatggagcagttgatattccctgaggaatataaaattaagc
atagtaatgtgttgttccactaataaaaaatattaatggtcaattttacc
aaattctgagtgcatttggaaaacgtcttgttggctagagataaggcaaa
gcaaataaaatgctgacttaataggtatcttcactatgtatgtatgtatg
tatgtatgtatgtatgtatgtatgtatatatgcataaatatataatttat
atatgtatttaagagggaggatgggtatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_129314602_129315755
seq2: B6Ng01-237P07.b_52_1198 (reverse)

seq1  TGCTG-ACTGCCACGATACTAAG-TCATAGCTTTTCACCATGTATTTTCA  48
      ||||| ||||||| ||||||||| ||||||| ||||| |||||||||   
seq2  TGCTGAACTGCCAGGATACTAAGTTCATAGC-TTTCA-CATGTATTTCAG  48

seq1  GCATACAATGCGCTGAACACAAGACCATGCAGCCTATTTCTTCTCTTTTT  98
      ||||||||||||||||||||||||| |||||||  ||    |||||||||
seq2  GCATACAATGCGCTGAACACAAGACAATGCAGCTAAT---CTCTCTTTTT  95

seq1  TTTTTCCCCAAAGAT-AAACCAGGCAAATTTCAACCTCAAAGAAAATAAA  147
      ||||| ||||||||| |||||||||||| ||||| |||||||||||||||
seq2  TTTTT-CCCAAAGATAAAACCAGGCAAA-TTCAA-CTCAAAGAAAATAAA  142

seq1  GTCTGGAAAAATATAGAAAGCATAGTACGATAAGAACAATTTGTATTAAA  197
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGG-AAAATATAGAAAGCATAGTACGATAAGAACAATTTGTATTAAA  191

seq1  GATGTATAAATACTTTAAAAAGATGTGAGGGAAAATAAACTTTGCAATTG  247
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATGTATAAATAC-TTAAAAAGATGTGAGGGAAAATAAACTTTGCAATTG  240

seq1  ACATAGCGAAGCATTTGATGAGTACTTTATACCCTGTCGTAATAAAGCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCGAAGCATTTGATGAGTACTTTATACCCTGTCGTAATAAAGCTT  290

seq1  AATAAACTAGGAGTAGATTTCCCAAATACAATCAAGCTTTGACATGAAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTAGGAGTAGATTTCCCAAATACAATCAAGCTTTGACATGAAAT  340

seq1  AAACAGCAAGCAAATGAACAAAACTCTGAAGTTTGAATTAACATCATAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAAGCAAATGAACAAAACTCTGAAGTTTGAATTAACATCATAGT  390

seq1  TCTAGCAAGAGAAAACATATTCCTAGTTTTAGAATAAGATAAGAATGAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAAGAGAAAACATATTCCTAGTTTTAGAATAAGATAAGAATGAAC  440

seq1  GTTATTAAATCACTTCATTCGTCATTATTAATACGAAGAGCAGAACACCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAAATCACTTCATTCGTCATTATTAATACGAAGAGCAGAACACCA  490

seq1  ATGGATGTTAAAAAATGAAGCTGGGCAAAGATCAGAATTAGACCAAAGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTTAAAAAATGAAGCTGGGCAAAGATCAGAATTAGACCAAAGCT  540

seq1  GGGAGGACAATAGATGGGAGTATCTATTGCTAACCCACCCTGGTTAGTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGACAATAGATGGGAGTATCTATTGCTAACCCACCCTGGTTAGTGA  590

seq1  GGCCAAGTGGACTGAAGAAAATACCAGAGATCCATGTGGGGACACCAGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGTGGACTGAAGAAAATACCAGAGATCCATGTGGGGACACCAGGG  640

seq1  GATGCCACACATTTGGGTTCAGGAGTAGAGCGATCAAAGCACTTCTCATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCACACATTTGGGTTCAGGAGTAGAGCGATCAAAGCACTTCTCATT  690

seq1  TGTATTATTAAAGCAATCAAGACACAAGGTGGCTTTTCGTCTCCAATTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATTAAAGCAATCAAGACACAAGGTGGCTTTTCGTCTCCAATTTG  740

seq1  TGAGGGGGACCTGAAGGTTAGAGGTCAGTCTTCTTGGAAGTACCTGGTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGGACCTGAAGGTTAGAGGTCAGTCTTCTTGGAAGTACCTGGTGT  790

seq1  TGAGTAGGTTTTACAATCACAGCAAAAGAATATACTTGGTGTTATGTCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGGTTTTACAATCACAGCAAAAGAATATACTTGGTGTTATGTCTT  840

seq1  ATCATCTTTGGTCATGTGAAAAGAGACAAGAATATTCTTCCTAGGCCTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTTGGTCATGTGAAAAGAGACAAGAATATTCTTCCTAGGCCTTT  890

seq1  GCCTTTCCCACAGAAATGATTTGGACACACCATCCATGGTGTTGCCTTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCCCACAGAAATGATTTGGACACACCATCCATGGTGTTGCCTTCA  940

seq1  TGTCCTTCCTTCCAAGTGCATCCACTTACCAGTTCCTGCAATTTGGTCCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCCTTCCAAGTGCATCCACTTACCAGTTCCTGCAATTTGGTCCA  990

seq1  GACCGCAAACATATGGAAAAAACATTGTGTACTCTGTACCATCCACAGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGCAAACATATGGAAAAAACATTGTGTACTCTGTACCATCCACAGGT  1040

seq1  CATGGTAAGTTCATAGCTTTCTTCCACAGGCTCCCTCAATCTTTCATCTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAAGTTCATAGCTTTCTTCCACAGGCTCCCTCAATCTTTCATCTT  1090

seq1  TTCTTAATGACCTTCAACATCATGATCCGCAGAATGTTCTGAGTTTCCAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATGACCTTCAACATCATGATCCGCAGAATGTTCTGAGTTTCCAA  1140

seq1  AGAATTC  1154
      |||||||
seq2  AGAATTC  1147

seq1: chr6_129221505_129221785
seq2: B6Ng01-237P07.g_68_348

seq1  AGGCTGTAAGATGGAGCAGTTGATATTCCCTGAGGAATATAAAATTAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTAAGATGGAGCAGTTGATATTCCCTGAGGAATATAAAATTAAGC  50

seq1  ATAGTAATGTGTTGTTCCACTAATAAAAAATATTAATGGTCAATTTTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATGTGTTGTTCCACTAATAAAAAATATTAATGGTCAATTTTACC  100

seq1  AAATTCTGAGTGCATTTGGAAAACGTCTTGTTGGCTAGAGATAAGGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGAGTGCATTTGGAAAACGTCTTGTTGGCTAGAGATAAGGCAAA  150

seq1  GCAAATAAAATGCTGACTTAATAGGTATCTTCACTATGTATGTATGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAAAATGCTGACTTAATAGGTATCTTCACTATGTATGTATGTATG  200

seq1  TATGTATGTATGTATGTATGTATGTATATATGCATAAATATATAATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTATGTATGTATGTATGTATATATGCATAAATATATAATTTAT  250

seq1  ATATGTATTTAGTAGGCATAATGGGTATATT  281
      |||||||||||  ||| |  |||||||||||
seq2  ATATGTATTTAAGAGGGAGGATGGGTATATT  281