BAC Information

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BAC

Clone NameB6Ng01-238A17
Chromosome6 (Build37)
Map Location 127,585,807 - 127,713,474
singlet/doubletdoublet
Overlap genePrmt8
Upstream geneKcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11, Efcab4b
Downstream geneTspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238A17.bB6Ng01-238A17.g
ACCGA048840GA048841
length6221,063
definitionB6Ng01-238A17.b B6Ng01-238A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,585,807 - 127,586,428)(127,712,402 - 127,713,474)
sequence
gaattcacttctccgcaggagccggcagagttgtgttgcttaattaggat
tgtctgaggtgaacttagaatttgattcagtctgttatggtcgtcgagtg
actttgtaattattctgtgaagaacaagaagaaaggaagggcacagatga
tgcttaaggaatgacgctatcaggcgcttggtgggagggtccccaggctg
atgccattgttagatgctcagtaatgacattaaggggtggcagaggagtg
actgtcctcccagcccagtgagcaaagtgacaagtttattaggccgttga
gtactctctaccacagaaccacactactgtgcacataggaattctgggac
cttggcggtgagactggagagccacttagtttccatgccaaggttcagaa
cacaggcaaagataaggcccagttatgaacttaactttccagtgatgcct
gcttctgtttcattgctttttccttcctccttccctccctcccttccttc
attttctccttcctcccttctctttccttctttcctttccttctctgaat
gctgctgttttcttgtataacagtagcatagtcttcctttccctcccctc
ctctcccttcccctcccctcct
gaattcttcttggaatgttctgttgacttgctaacccagcaagagcatca
tcacaggctgaggaagacccagtgatgacttggtctgggtacccatgagc
gctcctagagtgaaagtataagtgagctgattttcacagtggtatatata
cttggacggtccggctaataactattagcttccgcttcagtttcagctga
agtatgtggccccattataccaatgtccgaaaactgagaggtggggtaag
aggcagaggtagctgtttctcttaggatgctctgcctctgtgtctctgaa
aacaccaactccctgcacaggccctggagtccagctgctggcttttcaat
ccagttctagaatccctagatgtgttgtgggttgaatcagtgagaagatt
gttgttatgattaaatacattcaggcttgtttctggccaacacttggtgt
ttgaccgctatcctgctggcttataagaaactcgcctgccaggagttcag
tcttggtgggctctctcttccttgcttctcttgttgaaatgacccccccc
tttccattacccacatccatttcccttcttcagcaaacacctattgcaac
cctgaagtgagctcgggagaattaagaagatacccacatgtcctcccctc
cccctctggcaaagttggctttgtagagagtcctaaattggcttttggct
gtcaaagagggtgaaacacaacactcctgtctccagttctggagtgagct
tcatttcctcctctttgctaactgcgacgtgaagtgattctcacatacca
gtgtggaacatgcaaaaaaatctgtaaaaacactacttacaccttggact
gtactgtgccagcaggaagaaatgggcagactgacaatgtgtgggctgcc
aaggtaactgcaagaggctattgtgtgtatgagacacgggggttcatcta
tgcaaactgaagcagtcagtggattgacagggactctaaaagtgctatgc
tgtagctctgtctctgatgtcttaccaggatactaagtgcccactcatga
gtttcttgtcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_127585807_127586428
seq2: B6Ng01-238A17.b_43_664

seq1  GAATTCACTTCTCCGCAGGAGCCGGCAGAGTTGTGTTGCTTAATTAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTCCGCAGGAGCCGGCAGAGTTGTGTTGCTTAATTAGGAT  50

seq1  TGTCTGAGGTGAACTTAGAATTTGATTCAGTCTGTTATGGTCGTCGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGGTGAACTTAGAATTTGATTCAGTCTGTTATGGTCGTCGAGTG  100

seq1  ACTTTGTAATTATTCTGTGAAGAACAAGAAGAAAGGAAGGGCACAGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAATTATTCTGTGAAGAACAAGAAGAAAGGAAGGGCACAGATGA  150

seq1  TGCTTAAGGAATGACGCTATCAGGCGCTTGGTGGGAGGGTCCCCAGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAGGAATGACGCTATCAGGCGCTTGGTGGGAGGGTCCCCAGGCTG  200

seq1  ATGCCATTGTTAGATGCTCAGTAATGACATTAAGGGGTGGCAGAGGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATTGTTAGATGCTCAGTAATGACATTAAGGGGTGGCAGAGGAGTG  250

seq1  ACTGTCCTCCCAGCCCAGTGAGCAAAGTGACAAGTTTATTAGGCCGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCTCCCAGCCCAGTGAGCAAAGTGACAAGTTTATTAGGCCGTTGA  300

seq1  GTACTCTCTACCACAGAACCACACTACTGTGCACATAGGAATTCTGGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTCTACCACAGAACCACACTACTGTGCACATAGGAATTCTGGGAC  350

seq1  CTTGGCGGTGAGACTGGAGAGCCACTTAGTTTCCATGCCAAGGTTCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCGGTGAGACTGGAGAGCCACTTAGTTTCCATGCCAAGGTTCAGAA  400

seq1  CACAGGCAAAGATAAGGCCCAGTTATGAACTTAACTTTCCAGTGATGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCAAAGATAAGGCCCAGTTATGAACTTAACTTTCCAGTGATGCCT  450

seq1  GCTTCTGTTTCATTGCTTTTTCCTTCCTCCTTCCCTCCCTCCCTTCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTTTCATTGCTTTTTCCTTCCTCCTTCCCTCCCTCCCTTCCTTC  500

seq1  ATTTTCTCCTTCCTCCCTTCTCTTTCCTTCTTTCCTTTCCTTCTCTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCCTTCCTCCCTTCTCTTTCCTTCTTTCCTTTCCTTCTCTGAAT  550

seq1  GCTGCTGTTTTCTTGTATAACAGTAGCATAGTCTTCCTTTCCCTCCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTTTTCTTGTATAACAGTAGCATAGTCTTCCTTTCCCTCCCCTC  600

seq1  CTCTCCCTTCCCCTCCCCTCCT  622
      ||||||||||||||||||||||
seq2  CTCTCCCTTCCCCTCCCCTCCT  622

seq1: chr6_127712402_127713474
seq2: B6Ng01-238A17.g_65_1127 (reverse)

seq1  TTTGACAAGAAACTCATGAGTGGGCCACTAGGTATCTTGGGTAAGAACAT  50
      |||||||||||||||||||||||| ||||  ||||| | |||||| ||| 
seq2  TTTGACAAGAAACTCATGAGTGGG-CACTTAGTATCCT-GGTAAG-ACA-  46

seq1  TCAGAGACAAGAGCTACAGCATAGCAACTTTTTGGAGGTCCCTGTCCATC  100
      |||||||| |||||||||||||||| |||||| |   ||||||||| |||
seq2  TCAGAGAC-AGAGCTACAGCATAGC-ACTTTTAG--AGTCCCTGTCAATC  92

seq1  CACTGACTGCTTCAGTTTGCATAGATGGAACCCCCGTGTCTCATACACAC  150
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACTGACTGCTTCAGTTTGCATAGAT-GAACCCCCGTGTCTCATACACAC  141

seq1  AATAGCCTCTTGCAGTTACCTTGGCAGCCCACACATTGTCAGTCTGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCTCTTGCAGTTACCTTGGCAGCCCACACATTGTCAGTCTGCCCA  191

seq1  TTTCTTCCCTGCTGGCACAGTACAGTCCAAGGTGTAAGTAGTGTTTTTAC  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTT-CCTGCTGGCACAGTACAGTCCAAGGTGTAAGTAGTGTTTTTAC  240

seq1  AGATTTTTTTGCATGTTCCACACTGGTATGTGAGAATCACTTCACGTCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTTTGCATGTTCCACACTGGTATGTGAGAATCACTTCACGTCGC  290

seq1  AGTTAGCAAAGAGGAGGAAATGAAGCTCACTCCAGAACTGGAGACAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCAAAGAGGAGGAAATGAAGCTCACTCCAGAACTGGAGACAGGAG  340

seq1  TGTTGTGTTTCACCCTCTTTGACAGCCAAAAGCCAATTTAGGACTCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTTTCACCCTCTTTGACAGCCAAAAGCCAATTTAGGACTCTCTA  390

seq1  CAAAGCCAACTTTGCCAGAGGGGGAGGGGAGGACATGTGGGTATCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCAACTTTGCCAGAGGGGGAGGGGAGGACATGTGGGTATCTTCTT  440

seq1  AATTCTCCCGAGCTCACTTCAGGGTTGCAATAGGTGTTTGCTGAAGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCCCGAGCTCACTTCAGGGTTGCAATAGGTGTTTGCTGAAGAAGG  490

seq1  GAAATGGATGTGGGTAATGGAAAGGGGGGGGTCATTTCAACAAGAGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGATGTGGGTAATGGAAAGGGGGGGGTCATTTCAACAAGAGAAGC  540

seq1  AAGGAAGAGAGAGCCCACCAAGACTGAACTCCTGGCAGGCGAGTTTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAGAGAGCCCACCAAGACTGAACTCCTGGCAGGCGAGTTTCTTA  590

seq1  TAAGCCAGCAGGATAGCGGTCAAACACCAAGTGTTGGCCAGAAACAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAGCAGGATAGCGGTCAAACACCAAGTGTTGGCCAGAAACAAGCC  640

seq1  TGAATGTATTTAATCATAACAACAATCTTCTCACTGATTCAACCCACAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTATTTAATCATAACAACAATCTTCTCACTGATTCAACCCACAAC  690

seq1  ACATCTAGGGATTCTAGAACTGGATTGAAAAGCCAGCAGCTGGACTCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAGGGATTCTAGAACTGGATTGAAAAGCCAGCAGCTGGACTCCAG  740

seq1  GGCCTGTGCAGGGAGTTGGTGTTTTCAGAGACACAGAGGCAGAGCATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTGCAGGGAGTTGGTGTTTTCAGAGACACAGAGGCAGAGCATCCT  790

seq1  AAGAGAAACAGCTACCTCTGCCTCTTACCCCACCTCTCAGTTTTCGGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAACAGCTACCTCTGCCTCTTACCCCACCTCTCAGTTTTCGGACA  840

seq1  TTGGTATAATGGGGCCACATACTTCAGCTGAAACTGAAGCGGAAGCTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATAATGGGGCCACATACTTCAGCTGAAACTGAAGCGGAAGCTAAT  890

seq1  AGTTATTAGCCGGACCGTCCAAGTATATATACCACTGTGAAAATCAGCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTAGCCGGACCGTCCAAGTATATATACCACTGTGAAAATCAGCTC  940

seq1  ACTTATACTTTCACTCTAGGAGCGCTCATGGGTACCCAGACCAAGTCATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATACTTTCACTCTAGGAGCGCTCATGGGTACCCAGACCAAGTCATC  990

seq1  ACTGGGTCTTCCTCAGCCTGTGATGATGCTCTTGCTGGGTTAGCAAGTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTCTTCCTCAGCCTGTGATGATGCTCTTGCTGGGTTAGCAAGTCA  1040

seq1  ACAGAACATTCCAAGAAGAATTC  1073
      |||||||||||||||||||||||
seq2  ACAGAACATTCCAAGAAGAATTC  1063