BAC Information

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BAC

Clone NameB6Ng01-238G17
Chromosome6 (Build37)
Map Location 25,457,747 - 25,590,132
singlet/doubletdoublet
Overlap genenone
Upstream geneIqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358
Downstream geneGpr37, Pot1a, EG626912, LOC100041210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238G17.bB6Ng01-238G17.g
ACCGA049119GA049120
length1,141590
definitionB6Ng01-238G17.b B6Ng01-238G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,588,983 - 25,590,132)(25,457,747 - 25,458,338)
sequence
gaattcaggagctctcatgagccacatatatgtaagatcctcatgttgat
taataatggagttcatggctatacctcggtgcacatttatggagacagag
ctcctaagtgagtgttctgttggaaaattcagaccagtttccaataaact
ttccaatgaaagctgacatggagtaaggcaggtgatgaacatatgtgcta
ggacattattaggagaacagtttcaacatggtattatgatacttatcaaa
tactccattgtcaatgaagcaagttttagggtctcaactgtcttagttac
ttttctactgctctgctaaagcacaaggcccaaggtaacttataggagaa
aagtttatttggggcttacagttcagagagtgaatctatgatcatcatgg
tgagaacatgagagcaggaagagaggctttacactgtagcagtaactgag
agcttacatttttatctacaagcactggaaatggtgtgggtttttatttt
gtatttttcactttttggttttacgagatagggtttctctgtgtagccct
ggctgtcctgaactcactctgtagaccaggctggcctcgaactcagaaat
ccgcctgcctctgcctcccgagtcctgggattaaaggcatgtgccaccat
gcccggcatggtgtgggtttttaaaacctcaaagcccatccatagtgaca
cacatcctctaacaaggccacacctcctaagccatcttaaatagcttcac
cagctgcagagtaagttttaaactatattagactaggggagccattctca
ttcaaaaccactacaccaagggtgctgagtatacactaagtaaaacttct
gtaaggcatttatatttatttagtgatatgttttaaactcaccaaccatt
aattggtctaaataaataaatagaagactgatcatttaaaacaaacaatg
attaaaactaatctgatacgttcaagacaagttcatatggatattttata
agtcagatgctgtgtagtttgtatcctagatgttacttgttgggacactg
aactatttgttatgaatacacatgtcttttttttatcacaaacatgctta
ttgagccaacggcaaaaaaaaaaaggcctggagtcttcaaa
gaattcactgaagcatatggacttcaaataaaaaaatatttctttttttt
tttttttattcaatatatgtgggactttatttgctgaggttttttttctt
tttttttcccaattttttcaattaggtatttacttcatttatatttcaaa
tgctatcctgaaagacccctatattgcccccctcccccactcccctaccc
acccactcctacttcttggccctggtgtttcccctgtactggggcatata
aagtttgtgagaccaaggggcctctcttcccaatgatggccaattaggcc
atcttctgctacatatgcagctagagacacaagctctgggggtactggtt
agttcatattgttgttccacctatagggctgaagaccccttcagctcctt
gggtattttctctagctcctccattgggggccctgtgatccatccaatag
ctgactttgagcatccacttctgtgtttgccacacactggcctagcctca
cacaagacagctatatcagggtcctttcagcaaaatcttgctagtgtgtg
caatggtgtcagggtttgggggccgattatgggatggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_25588983_25590132
seq2: B6Ng01-238G17.b_41_1181 (reverse)

seq1  TTTGAGGACT-CAGGCTTTTTTTTTTTTTGCCTTTTGCTTCAAATAGCAT  49
      ||||| |||| |||||  |||||||||||||| || || ||||  |||||
seq2  TTTGAAGACTCCAGGC-CTTTTTTTTTTTGCCGTTGGC-TCAATAAGCAT  48

seq1  GTTTGTG-TATAAAAAAGACATGTGTA-TCATA--CAATAGTTCAGTGTC  95
      ||||||| || |||||||||||||||| |||||   ||||||||||||||
seq2  GTTTGTGATAAAAAAAAGACATGTGTATTCATAACAAATAGTTCAGTGTC  98

seq1  CCAACAAGT-ACATCTAGGATACAAACTAACACCAGCATCCCTGACTTAT  144
      ||||||||| |||||||||||||||||| ||| ||||||  |||||||||
seq2  CCAACAAGTAACATCTAGGATACAAACT-ACA-CAGCAT--CTGACTTAT  144

seq1  AAAATATCCATATGAACTTTGTCTTTGAACGTATCAGATTAGTTTTTATT  194
      ||||||||||||||||| ||||| |||||||||||||||||| ||||| |
seq2  AAAATATCCATATGAAC-TTGTC-TTGAACGTATCAGATTAG-TTTTAAT  191

seq1  CATTTGTTTTGTTTTTAAATGATCAGTCTTTCTTATTTTATTTATTTAGA  244
      || ||||||   |||||||||||||||| ||||   ||||||||||||||
seq2  CA-TTGTTT--GTTTTAAATGATCAGTC-TTCT--ATTTATTTATTTAGA  235

seq1  CCAATTAATGGTTGGTGAGTTTAAAACATATCACTAAATAAATATAAATG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAATGGTTGGTGAGTTTAAAACATATCACTAAATAAATATAAATG  285

seq1  CCTTACAGAAGTTTTACTTAGTGTATACTCAGCACCCTTGGTGTAGTGGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAGAAGTTTTACTTAGTGTATACTCAGCACCCTTGGTGTAGTGGT  335

seq1  TTTGAATGAGAATGGCTCCCCTAGTCTAATATAGTTTAAAACTTACTCTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGAGAATGGCTCCCCTAGTCTAATATAGTTTAAAACTTACTCTG  385

seq1  CAGCTGGTGAAGCTATTTAAGATGGCTTAGGAGGTGTGGCCTTGTTAGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGTGAAGCTATTTAAGATGGCTTAGGAGGTGTGGCCTTGTTAGAG  435

seq1  GATGTGTGTCACTATGGATGGGCTTTGAGGTTTTAAAAACCCACACCATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTGTCACTATGGATGGGCTTTGAGGTTTTAAAAACCCACACCATG  485

seq1  CCGGGCATGGTGGCACATGCCTTTAATCCCAGGACTCGGGAGGCAGAGGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCATGGTGGCACATGCCTTTAATCCCAGGACTCGGGAGGCAGAGGC  535

seq1  AGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCAGG  585

seq1  ACAGCCAGGGCTACACAGAGAAACCCTATCTCGTAAAACCAAAAAGTGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGGCTACACAGAGAAACCCTATCTCGTAAAACCAAAAAGTGAA  635

seq1  AAATACAAAATAAAAACCCACACCATTTCCAGTGCTTGTAGATAAAAATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAAATAAAAACCCACACCATTTCCAGTGCTTGTAGATAAAAATG  685

seq1  TAAGCTCTCAGTTACTGCTACAGTGTAAAGCCTCTCTTCCTGCTCTCATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCTCAGTTACTGCTACAGTGTAAAGCCTCTCTTCCTGCTCTCATG  735

seq1  TTCTCACCATGATGATCATAGATTCACTCTCTGAACTGTAAGCCCCAAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACCATGATGATCATAGATTCACTCTCTGAACTGTAAGCCCCAAAT  785

seq1  AAACTTTTCTCCTATAAGTTACCTTGGGCCTTGTGCTTTAGCAGAGCAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTCTCCTATAAGTTACCTTGGGCCTTGTGCTTTAGCAGAGCAGT  835

seq1  AGAAAAGTAACTAAGACAGTTGAGACCCTAAAACTTGCTTCATTGACAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTAACTAAGACAGTTGAGACCCTAAAACTTGCTTCATTGACAAT  885

seq1  GGAGTATTTGATAAGTATCATAATACCATGTTGAAACTGTTCTCCTAATA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATTTGATAAGTATCATAATACCATGTTGAAACTGTTCTCCTAATA  935

seq1  ATGTCCTAGCACATATGTTCATCACCTGCCTTACTCCATGTCAGCTTTCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTAGCACATATGTTCATCACCTGCCTTACTCCATGTCAGCTTTCA  985

seq1  TTGGAAAGTTTATTGGAAACTGGTCTGAATTTTCCAACAGAACACTCACT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGTTTATTGGAAACTGGTCTGAATTTTCCAACAGAACACTCACT  1035

seq1  TAGGAGCTCTGTCTCCATAAATGTGCACCGAGGTATAGCCATGAACTCCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCTCTGTCTCCATAAATGTGCACCGAGGTATAGCCATGAACTCCA  1085

seq1  TTATTAATCAACATGAGGATCTTACATATATGTGGCTCATGAGAGCTCCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATCAACATGAGGATCTTACATATATGTGGCTCATGAGAGCTCCT  1135

seq1  GAATTC  1150
      ||||||
seq2  GAATTC  1141

seq1: chr6_25457747_25458338
seq2: B6Ng01-238G17.g_66_655

seq1  GAATTCACTGAAGCATATGGACTTCAAATAAAAAAAATATTTCTTTTTTT  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTCACTGAAGCATATGGACTTCAAAT-AAAAAAATATTTCTTTTTTT  49

seq1  TTTTTTTTATTCAATATATGTGGGACTTTATTTGCTGAGGTTTTTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTTTTTATTCAATATATGTGGGACTTTATTTGCTGAGGTTTTTTTTC-  98

seq1  TTTTTTTTTCCCAATTTTTTCAATTAGGTATTTACTTCATTTATATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCCCAATTTTTTCAATTAGGTATTTACTTCATTTATATTTCA  148

seq1  AATGCTATCCTGAAAGACCCCTATATTGCCCCCCTCCCCCACTCCCCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATCCTGAAAGACCCCTATATTGCCCCCCTCCCCCACTCCCCTAC  198

seq1  CCACCCACTCCTACTTCTTGGCCCTGGTGTTTCCCCTGTACTGGGGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACTCCTACTTCTTGGCCCTGGTGTTTCCCCTGTACTGGGGCATA  248

seq1  TAAAGTTTGTGAGACCAAGGGGCCTCTCTTCCCAATGATGGCCAATTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTGTGAGACCAAGGGGCCTCTCTTCCCAATGATGGCCAATTAGG  298

seq1  CCATCTTCTGCTACATATGCAGCTAGAGACACAAGCTCTGGGGGTACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCTGCTACATATGCAGCTAGAGACACAAGCTCTGGGGGTACTGG  348

seq1  TTAGTTCATATTGTTGTTCCACCTATAGGGCTGAAGACCCCTTCAGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCATATTGTTGTTCCACCTATAGGGCTGAAGACCCCTTCAGCTCC  398

seq1  TTGGGTATTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTATTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAAT  448

seq1  AGCTGACTTTGAGCATCCACTTCTGTGTTTGCCACACACTGGCCTAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTTTGAGCATCCACTTCTGTGTTTGCCACACACTGGCCTAGCCT  498

seq1  CACACAAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTAGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTAGTGTG  548

seq1  TGCAATGGTGTCAGGGTTTGGGGGCCGATTATGGGATGGATC  592
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGGTGTCAGGGTTTGGGGGCCGATTATGGGATGGATC  590