BAC Information

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BAC

Clone NameB6Ng01-238G23
Chromosome6 (Build37)
Map Location 78,815,601 - 78,917,446
singlet/doubletdoublet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
Downstream geneLOC384440, LOC621815, LOC100043392
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238G23.bB6Ng01-238G23.g
ACCGA049131GA049132
length1,0441,102
definitionB6Ng01-238G23.b B6Ng01-238G23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,916,400 - 78,917,446)(78,815,601 - 78,816,683)
sequence
gaattcatagtttccgtgttactgtcatcttagccactaggattattagt
aagcagatgcaactaaatataatttattaaatattttctgtgtaaacata
tgattgaaaaaatgcaatcaaatttgaactcaatagttttgtggatcacc
aaattattactcattttaccatttaatttttctttcatttgaaataaaca
tttataattctggtagatagaaaagatccaatgcactactggatttgagc
attgttttatgcctggtcaatatgtagatgatagttatgaattctcaacc
cattactaatatatgctttatatttcaaattatcaaaacttcccattgtc
tttagttttcaaataaagagaagttatgaagataatgatggcatttttaa
atacaaagcatatcagaacttaaaatacatctgtatttgacatcagacta
attgaccatatgtctttttctcatggttttgtccccatatcaatcaatcc
attcctagaaagggtcttgaaataaaaatatagtcacctacagccatttc
tcattgctggtgggagtacaaatttgaacagtcactatggaaatcaatat
gatggttccccagaaaattaggaatcgatctacctttagacccagctata
ccactcttaggcacatactcaaagaatgttccattctaccacaagaatat
ttgctaagctatgttcatagcagttttgttcatcgtagctagaaactaga
agcaacctaagtattcttccaatgaatgaaattttacatttatacattgc
agtatgtctcagaagtttaaaatatggcatcatgaggtttgcaggcaaat
gaatggaactagaaaaccaccattctaaatgaggcaacccagactcagaa
agacaaacatggtatgtactcacttataagttgatattaactatcatgaa
aatgatatcatgataaatccacagacccagagtagctaaataaccaaaag
gctcttagaaggtcacatgaatttcctttggaagggaaatagaa

gaattcatcctgctaatgtcaactacatatttaaagggttgtttttattt
tacttccaaatgtgtttgctataatttttatgtgttttggggggattttt
gttattcattcttagtttaattacggtcatataaaattgcattcatcacc
ttctatgaaacttaatgaagtttaattggtgttttggtttatggaacaat
tgtgtaaaaaatttcaaacctttaaaaacaaaatgtgttttggcagtttc
aaattgaatatattaatacccagtgcatgataaatactcaaatatgcctt
actgttgtgaaataacatttactaatgcatgcctcattccaatctgtttt
acaagttgtaaaatatatcactaactgaaaatgttctatacattttgcta
tgtcactctgacagaaatacatgtatcctatactttcctataatataagg
tttatgttactactaaaattattatttcttcctttattgtacttacttta
tcctcagtaattattaaggagtgtgcgtatgtccagcaacctttgctgtg
ccactggaccaccttcagctgttaagcttgagaaggtgcttcgctattta
gcccaagctggcctcatggttgagaacctccttggtccccaatgtgagaa
ttgatattaatggcttgaaccaccatttttagtttcctatgcttaccttt
tagatcttacgagtatttgcacaccatttgttatgctattttactcacga
ttccataattatatcttgaccatgagtctcagtttgactctcagagagtc
taaaatttgggatctagcctttcaactcccttaaatgtacaaggaaaata
aaagcatctttgtggatttggtctattgcttatattatgtaatatcagtt
ccccaattacagagaaatttcgcatgtttacatgtaagaagttgtgtccc
tgccccccagttgtctctaatggtaaattaaagtttcttggcagtcaatg
gtgggggcaaggtagacagaagtagggatttccagattccctgggcagga
atgctaggagaagtggagaggagatggacaacgctccgtcatgtccatgg
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_78916400_78917446
seq2: B6Ng01-238G23.b_48_1091 (reverse)

seq1  TTCTATTTCCCCTTCCAAAGGAAATTCATGTGACC-TCTAAGAGCCTTTT  49
      |||||||| |||||||||||||||||||||||||| |||||||||| |||
seq2  TTCTATTT-CCCTTCCAAAGGAAATTCATGTGACCTTCTAAGAGCC-TTT  48

seq1  TGGTTATTTAGCTACTCTGGGTCTGTGGATTTTATCATGATTATCATTTT  99
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  TGGTTATTTAGCTACTCTGGGTCTGTGGA-TTTATCATGA-TATCATTTT  96

seq1  CATGATAGTTAATATCAACTTATAAGTGAGTACATACCATGTTTGTCTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAGTTAATATCAACTTATAAGTGAGTACATACCATGTTTGTCTTT  146

seq1  CTGAGTCTGGGTTGCCTCATTTAGAATGGTGGTTTTCTAGTTCCATTCAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCTGGGTTGCCTCATTTAGAATGGTGGTTTTCTAGTTCCATTCAT  196

seq1  TTGCCTGCAAACCTCATGATGCCATATTTTAAACTTCTGAGACATACTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGCAAACCTCATGATGCCATATTTTAAACTTCTGAGACATACTGC  246

seq1  AATGTATAAATGTAAAATTTCATTCATTGGAAGAATACTTAGGTTGCTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATAAATGTAAAATTTCATTCATTGGAAGAATACTTAGGTTGCTTC  296

seq1  TAGTTTCTAGCTACGATGAACAAAACTGCTATGAACATAGCTTAGCAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTAGCTACGATGAACAAAACTGCTATGAACATAGCTTAGCAAAT  346

seq1  ATTCTTGTGGTAGAATGGAACATTCTTTGAGTATGTGCCTAAGAGTGGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGTGGTAGAATGGAACATTCTTTGAGTATGTGCCTAAGAGTGGTA  396

seq1  TAGCTGGGTCTAAAGGTAGATCGATTCCTAATTTTCTGGGGAACCATCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGGTCTAAAGGTAGATCGATTCCTAATTTTCTGGGGAACCATCAT  446

seq1  ATTGATTTCCATAGTGACTGTTCAAATTTGTACTCCCACCAGCAATGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTCCATAGTGACTGTTCAAATTTGTACTCCCACCAGCAATGAGA  496

seq1  AATGGCTGTAGGTGACTATATTTTTATTTCAAGACCCTTTCTAGGAATGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGTAGGTGACTATATTTTTATTTCAAGACCCTTTCTAGGAATGG  546

seq1  ATTGATTGATATGGGGACAAAACCATGAGAAAAAGACATATGGTCAATTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGATATGGGGACAAAACCATGAGAAAAAGACATATGGTCAATTA  596

seq1  GTCTGATGTCAAATACAGATGTATTTTAAGTTCTGATATGCTTTGTATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATGTCAAATACAGATGTATTTTAAGTTCTGATATGCTTTGTATTT  646

seq1  AAAAATGCCATCATTATCTTCATAACTTCTCTTTATTTGAAAACTAAAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCCATCATTATCTTCATAACTTCTCTTTATTTGAAAACTAAAGA  696

seq1  CAATGGGAAGTTTTGATAATTTGAAATATAAAGCATATATTAGTAATGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGAAGTTTTGATAATTTGAAATATAAAGCATATATTAGTAATGGG  746

seq1  TTGAGAATTCATAACTATCATCTACATATTGACCAGGCATAAAACAATGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATTCATAACTATCATCTACATATTGACCAGGCATAAAACAATGC  796

seq1  TCAAATCCAGTAGTGCATTGGATCTTTTCTATCTACCAGAATTATAAATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCCAGTAGTGCATTGGATCTTTTCTATCTACCAGAATTATAAATG  846

seq1  TTTATTTCAAATGAAAGAAAAATTAAATGGTAAAATGAGTAATAATTTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCAAATGAAAGAAAAATTAAATGGTAAAATGAGTAATAATTTGG  896

seq1  TGATCCACAAAACTATTGAGTTCAAATTTGATTGCATTTTTTCAATCATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCACAAAACTATTGAGTTCAAATTTGATTGCATTTTTTCAATCATA  946

seq1  TGTTTACACAGAAAATATTTAATAAATTATATTTAGTTGCATCTGCTTAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACACAGAAAATATTTAATAAATTATATTTAGTTGCATCTGCTTAC  996

seq1  TAATAATCCTAGTGGCTAAGATGACAGTAACACGGAAACTATGAATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATCCTAGTGGCTAAGATGACAGTAACACGGAAACTATGAATTC  1044


seq1: chr6_78815601_78816683
seq2: B6Ng01-238G23.g_66_1167

seq1  GAATTCATCCTGCTAATGTCAACTACATATTTAAAGGGTTGTTTTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTGCTAATGTCAACTACATATTTAAAGGGTTGTTTTTATTT  50

seq1  TACTTCCAAATGTGTTTGCTATAATTTTTATGTGTTTTGGGGGGATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCAAATGTGTTTGCTATAATTTTTATGTGTTTTGGGGGGATTTTT  100

seq1  GTTATTCATTCTTAGTTTAATTACGGTCATATAAAATTGCATTCATCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCATTCTTAGTTTAATTACGGTCATATAAAATTGCATTCATCACC  150

seq1  TTCTATGAAACTTAATGAAGTTTAATTGGTGTTTTGGTTTATGGAACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGAAACTTAATGAAGTTTAATTGGTGTTTTGGTTTATGGAACAAT  200

seq1  TGTGTAAAAAATTTCAAACCTTTAAAAACAAAATGTGTTTTGGCAGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAAAAATTTCAAACCTTTAAAAACAAAATGTGTTTTGGCAGTTTC  250

seq1  AAATTGAATATATTAATACCCAGTGCATGATAAATACTCAAATATGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAATATATTAATACCCAGTGCATGATAAATACTCAAATATGCCTT  300

seq1  ACTGTTGTGAAATAACATTTACTAATGCATGCCTCATTCCAATCTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGTGAAATAACATTTACTAATGCATGCCTCATTCCAATCTGTTTT  350

seq1  ACAAGTTGTAAAATATATCACTAACTGAAAATGTTCTATACATTTTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGTAAAATATATCACTAACTGAAAATGTTCTATACATTTTGCTA  400

seq1  TGTCACTCTGACAGAAATACATGTATCCTATACTTTCCTATAATATAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTCTGACAGAAATACATGTATCCTATACTTTCCTATAATATAAGG  450

seq1  TTTATGTTACTACTAAAATTATTATTTCTTCCTTTATTGTACTTACTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTACTACTAAAATTATTATTTCTTCCTTTATTGTACTTACTTTA  500

seq1  TCCTCAGTAATTATTAAGGAGTGTGCGTATGTCCAGCAACCTTTGCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGTAATTATTAAGGAGTGTGCGTATGTCCAGCAACCTTTGCTGTG  550

seq1  CCACTGGACCACCTTCAGCTGTTAAGCTTGAGAAGGTGCTTCGCTATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGACCACCTTCAGCTGTTAAGCTTGAGAAGGTGCTTCGCTATTTA  600

seq1  GCCCAAGCTGGCCTCATGGTTGAGAACCTCCTTGGTCCCCAATGTGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGCTGGCCTCATGGTTGAGAACCTCCTTGGTCCCCAATGTGAGAA  650

seq1  TTGATATTAATGGCTTGAACCACCATTTTTAGTTTCCTATGCTTACCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTAATGGCTTGAACCACCATTTTTAGTTTCCTATGCTTACCTTT  700

seq1  TAGATCTTACGAGTATTTGCACACCA-TTGTTATGCTATTTTACTCACGA  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGATCTTACGAGTATTTGCACACCATTTGTTATGCTATTTTACTCACGA  750

seq1  TTCCATAATTATATCTTGACCATGAGTCTCAGTTTGACTCTCAGAGAGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAATTATATCTTGACCATGAGTCTCAGTTTGACTCTCAGAGAGTC  800

seq1  TAAAATTT-GGATCTAGCCTTTCAACT-CCTTAAATGTACAAGGAAAATA  847
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  TAAAATTTGGGATCTAGCCTTTCAACTCCCTTAAATGTACAAGGAAAATA  850

seq1  AAAGCATC-TTGTGGATTTGGTCTATTGCTTATATTATGT-ATATCAGGT  895
      |||||||| ||||||||||||||||||||||||||||||| |||||| ||
seq2  AAAGCATCTTTGTGGATTTGGTCTATTGCTTATATTATGTAATATCA-GT  899

seq1  TCCCAAATTACAGAGAAA-TTCGCATGTTTACATGTAAGAAGTTGTGTCC  944
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCCCAATTACAGAGAAATTTCGCATGTTTACATGTAAGAAGTTGTGTCC  949

seq1  CTG-CCCCCAGTTGTCTCTAATTGGTAAA-TAAAGTTTC-TGGCAGCCAA  991
      ||| ||||||||||||||||| ||||||| ||||||||| |||||| |||
seq2  CTGCCCCCCAGTTGTCTCTAA-TGGTAAATTAAAGTTTCTTGGCAGTCAA  998

seq1  TGGTGGGG--CAGGGAGACAGAAGTAGGAATT--CAGATTCCCGGGCAAG  1037
      ||||||||   ||| ||||||||||||| |||  ||||||||| ||  ||
seq2  TGGTGGGGGCAAGGTAGACAGAAGTAGGGATTTCCAGATTCCCTGGGCAG  1048

seq1  GAATGC-AGGAGA--GGGAGAGGAAGATGGACA----GCCGTCATG--CA  1078
      |||||| ||||||   ||||||| |||||||||     ||||||||  ||
seq2  GAATGCTAGGAGAAGTGGAGAGG-AGATGGACAACGCTCCGTCATGTCCA  1097

seq1  TGGGA  1083
      |||||
seq2  TGGGA  1102


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