BAC Information

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BAC

Clone NameB6Ng01-238N09
Chromosome6 (Build37)
Map Location 27,116,834 - 27,261,093
singlet/doubletdoublet
Overlap geneLOC100041247, Grm8
Upstream geneLOC100041210
Downstream gene6530409C15Rik, AA407452, LOC100041304
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238N09.bB6Ng01-238N09.g
ACCGA049428GA049429
length1,1131,040
definitionB6Ng01-238N09.b B6Ng01-238N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,259,970 - 27,261,093)(27,116,834 - 27,117,859)
sequence
gaattcctctaattgtttgaaatattctttcaaagattaatatatatagg
agggatttaagcttatttctaattgttgatggaagtaccattaccaaaga
gataatctggtctaagttagagttgaatagttcagtgatttttcatatcc
tgattgatatgaattatctttgtggctttcaacatataacccaactgctt
atcaaaataaaactatctttaattcttaaagtagaaacctaacaggaatg
ttccagagttagagatttcttgaagtcgttaatatatcatgcaggctcca
taaaaagtgatagctgcctgagtttgagtctcactgaaagcagaagcctg
aggcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtgaacccaaggtac
taagaaggaaatactggaagcaagtgggtggggggagcaatgaggtgcag
caggaaacaggaacatcagtatagtgcatattcaatcagatgtcagcctc
tctaggcttcctctacctatctgtgtgagtcacaaaagaccagagctttt
agccacagcacagttacttctctgtaggtttttatttttccttttttttt
tttttttaaagaaattggtcacatgcatagatagaaccaacttatgatgc
agatggaggtttgactaccaaatgtttctaaggctgatctttctactgtg
gtgatttcatgaggaaataatgagttaagcatcatgttgcttacttaaaa
gaatcctgggaagaggagtgtctttagcaaggacttgggcttgaagcaat
gatgatgggcacatggggggaacttggatgtctaaagagggagaggaatt
aaccaggaccacagtgcatttggtaaaggttctttgtaagagtaattggt
acatcctgagacaataagatatagatttaaatatgaaaaggatgtctgca
taagaattggccttaggcagtcatcaatcatcatcaatcacaaagagtag
aaatacttactatgtgcatctgtagatggggaaaacagaatcactgtcaa
agaattaagttaagttgaattgcattgctgtaatttgtctatagacggac
tcaatgcatgagt
gaattctcacctgatcctgcattaccatgtgccatcaccatgacaactta
gtgctagctaacatagccccaagtacctgttggcagaaaattaagctaat
gagttttttattctctgtgttgaagtagttcctaatcagccctcacaact
atagccacttaatcatcatatagttttaaatagagtggctgtgtcactct
gtagcaaaaggggagttcaaaggatttctagtcctttcagaccattaata
ataataaagccactgtaatttctcagatttgatatacatcctcgttctgg
agaaacacaaggcttcacaggtttgttgaaaaatgtatcaaaagatttcc
tcagaagcagctaaactgtcaaaattattaactctgttgcttaacacaat
tacgttatataattgttctccacctatctgttgcccatgtaagagtgtac
cttggccttcaaacagtcttaatacattattgattttaatttgaattgat
tctcttgtgatatgttatcactactgtctttatttatttatttatttatt
tatttatttatttatttatttatttatttatttattgagacagggttttc
tctgtatagccctagctgtcctggaattcactttgtagaccagacaggcc
ttcttaaattttagaaatctgcctactctgcctcccaagtgctgggatta
aaggcgtgcgccaccacgcccagctatcactgttgtcttttgatttgcat
gatttagttgcctttcttttttcctctcctgttgaagttgattagataac
tgtggctcctgtattaaaatcagttttctgggatgggactctagtcttag
tagcagaatacttaccaagtctacagtaacttccctgatgtactccagca
ttgcccaaaacaataaaaaataaaaataaattaattaaccattccctcca
tttcctccatctctctactttcttctaaggtcaacctgccttacggatgg
gccaaattggagaatgttcctctaaaactaaattctttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_27259970_27261093
seq2: B6Ng01-238N09.b_47_1159 (reverse)

seq1  ACTCATGCATTGGAGCTCCTGGTTCTTAATTAGACCCAGGATTTACAGCA  50
      ||||||||||| ||| |||    |||    |||||     | ||||||||
seq2  ACTCATGCATT-GAG-TCC---GTCT---ATAGAC----AAATTACAGCA  38

seq1  ATGCA--TCACCCTTACCTCTAATTCTTTGACAGTGGGTTTCTG-TTTCC  97
      |||||  |||  |||| || |||||||||||||||  | ||||| |||||
seq2  ATGCAATTCA-ACTTAACT-TAATTCTTTGACAGT--GATTCTGTTTTCC  84

seq1  CCATCTTACAGATGGCACATAGTAGGTA-TTCTACTCTTTGTTGATTGAT  146
      ||||| ||||||| |||||||||| ||| |||||||||||| ||||||| 
seq2  CCATC-TACAGAT-GCACATAGTAAGTATTTCTACTCTTTG-TGATTGA-  130

seq1  TGATGATTGATTGACTGCCTAA-GCCAATTCTTATGCAGACATCCTTTTC  195
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  TGATGATTGA-TGACTGCCTAAGGCCAATTCTTATGCAGACATCCTTTTC  179

seq1  ATATTTAAATCTATATCTTATTGTCTCAGGATGTACAAATAACTCTTACA  245
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  ATATTTAAATCTATATCTTATTGTCTCAGGATGTACCAATTACTCTTACA  229

seq1  AAGAA-CTTTAACCAATGCACTGT-GTCCTGGTTAATTCCTCTCCCTCCT  293
      ||||| ||||| | |||||||||| ||||||||||||||||||||||| |
seq2  AAGAACCTTTACCAAATGCACTGTGGTCCTGGTTAATTCCTCTCCCTCTT  279

seq1  TAGACATCCAAGTT-CCCCCATGTGCCCATCATCATTGCTTCAAG-CCAA  341
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  TAGACATCCAAGTTCCCCCCATGTGCCCATCATCATTGCTTCAAGCCCAA  329

seq1  GTCCTTGCTAAAGACACT-CTCTTCCCAGGATTCTTTTAAGTAAGCAACA  390
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTCCTTGCTAAAGACACTCCTCTTCCCAGGATTCTTTTAAGTAAGCAACA  379

seq1  TGATGCTTAACTCATTATTTCCTCATGAAATCACCACAGTAGAAAGATCA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTAACTCATTATTTCCTCATGAAATCACCACAGTAGAAAGATCA  429

seq1  GCCTTAGAAACATTTGGTAGTCAAACCTCCATCTGCATCATAAGTTGGTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGAAACATTTGGTAGTCAAACCTCCATCTGCATCATAAGTTGGTT  479

seq1  CTATCTATGCATGTGACCAATTTCTTTAAAAAAAAAAAAAAAAGGAAAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATGCATGTGACCAATTTCTTTAAAAAAAAAAAAAAAAGGAAAAA  529

seq1  TAAAAACCTACAGAGAAGTAACTGTGCTGTGGCTAAAAGCTCTGGTCTTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCTACAGAGAAGTAACTGTGCTGTGGCTAAAAGCTCTGGTCTTT  579

seq1  TGTGACTCACACAGATAGGTAGAGGAAGCCTAGAGAGGCTGACATCTGAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCACACAGATAGGTAGAGGAAGCCTAGAGAGGCTGACATCTGAT  629

seq1  TGAATATGCACTATACTGATGTTCCTGTTTCCTGCTGCACCTCATTGCTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGCACTATACTGATGTTCCTGTTTCCTGCTGCACCTCATTGCTC  679

seq1  CCCCCACCCACTTGCTTCCAGTATTTCCTTCTTAGTACCTTGGGTTCACT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCACTTGCTTCCAGTATTTCCTTCTTAGTACCTTGGGTTCACT  729

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAGGCTTCTGCTTTCA  790
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCTCAGGCTTCTGCTTTCA  779

seq1  GTGAGACTCAAACTCAGGCAGCTATCACTTTTTATGGAGCCTGCATGATA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACTCAAACTCAGGCAGCTATCACTTTTTATGGAGCCTGCATGATA  829

seq1  TATTAACGACTTCAAGAAATCTCTAACTCTGGAACATTCCTGTTAGGTTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACGACTTCAAGAAATCTCTAACTCTGGAACATTCCTGTTAGGTTT  879

seq1  CTACTTTAAGAATTAAAGATAGTTTTATTTTGATAAGCAGTTGGGTTATA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTAAGAATTAAAGATAGTTTTATTTTGATAAGCAGTTGGGTTATA  929

seq1  TGTTGAAAGCCACAAAGATAATTCATATCAATCAGGATATGAAAAATCAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAAGCCACAAAGATAATTCATATCAATCAGGATATGAAAAATCAC  979

seq1  TGAACTATTCAACTCTAACTTAGACCAGATTATCTCTTTGGTAATGGTAC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTATTCAACTCTAACTTAGACCAGATTATCTCTTTGGTAATGGTAC  1029

seq1  TTCCATCAACAATTAGAAATAAGCTTAAATCCCTCCTATATATATTAATC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCAACAATTAGAAATAAGCTTAAATCCCTCCTATATATATTAATC  1079

seq1  TTTGAAAGAATATTTCAAACAATTAGAGGAATTC  1124
      ||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGAATATTTCAAACAATTAGAGGAATTC  1113

seq1: chr6_27116834_27117859
seq2: B6Ng01-238N09.g_68_1107

seq1  GAATTCTCACCTGATCCTGCATTACCATGTGCCATCACCATGACAACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGATCCTGCATTACCATGTGCCATCACCATGACAACTTA  50

seq1  GTGCTAGCTAACATAGCCCCAAGTACCTGTTGGCAGAAAATTAAGCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGCTAACATAGCCCCAAGTACCTGTTGGCAGAAAATTAAGCTAAT  100

seq1  GAGTTTTTTATTCTCTGTGTTGAAGTAGTTCCTAATCAGCCCTCACAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTTTATTCTCTGTGTTGAAGTAGTTCCTAATCAGCCCTCACAACT  150

seq1  ATAGCCACTTAATCATCATATAGTTTTAAATAGAGTGGCTGTGTCACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCACTTAATCATCATATAGTTTTAAATAGAGTGGCTGTGTCACTCT  200

seq1  GTAGCAAAAGGGGAGTTCAAAGGATTTCTAGTCCTTTCAGACCATTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAAAGGGGAGTTCAAAGGATTTCTAGTCCTTTCAGACCATTAATA  250

seq1  ATAATAAAGCCACTGTAATTTCTCAGATTTGATATACATCCTCGTTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAGCCACTGTAATTTCTCAGATTTGATATACATCCTCGTTCTGG  300

seq1  AGAAACACAAGGCTTCACAGGTTTGTTGAAAAATGTATCAAAAGATTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACAAGGCTTCACAGGTTTGTTGAAAAATGTATCAAAAGATTTCC  350

seq1  TCAGAAGCAGCTAAACTGTCAAAATTATTAACTCTGTTGCTTAACACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGCAGCTAAACTGTCAAAATTATTAACTCTGTTGCTTAACACAAT  400

seq1  TACGTTATATAATTGTTCTCCACCTATCTGTTGCCCATGTAAGAGTGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTATATAATTGTTCTCCACCTATCTGTTGCCCATGTAAGAGTGTAC  450

seq1  CTTGGCCTTCAAACAGTCTTAATACATTATTGATTTTAATTTGAATTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCTTCAAACAGTCTTAATACATTATTGATTTTAATTTGAATTGAT  500

seq1  TCTCTTGTGATATGTTATCACTACTGTC----TTTATTTATTTATTTATT  546
      ||||||||||||||||||||||||||||    ||||||||||||||||||
seq2  TCTCTTGTGATATGTTATCACTACTGTCTTTATTTATTTATTTATTTATT  550

seq1  TATTTATTTATTTATTTATTTATTTATTTATTTATTGAGACAGGG-TTTC  595
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATTTATTTATTTATTTATTTATTTATTTATTTATTGAGACAGGGTTTTC  600

seq1  TCTGTATAGCCCTAGCTGTCCTGGAATTCACTTTGTAGACCAGACAGGCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAGCCCTAGCTGTCCTGGAATTCACTTTGTAGACCAGACAGGCC  650

seq1  TTCTTAAA-TTTAGAAATCTGCCTACTCTGCCTCCCAAGTGCTGGGATTA  694
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAATTTTAGAAATCTGCCTACTCTGCCTCCCAAGTGCTGGGATTA  700

seq1  AAGGCGTGCGCCACCACGCCCAGCTATCACTGTTGTCTTTTGATTTGCAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTGCGCCACCACGCCCAGCTATCACTGTTGTCTTTTGATTTGCAT  750

seq1  GATTTAGTTGCCTTTCTTTTTTCCTCTCCTGTTGAAGTTGATTAGATAAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGTTGCCTTTCTTTTTTCCTCTCCTGTTGAAGTTGATTAGATAAC  800

seq1  TGTGGCTCCTGTATTAAAATCAG-TTTCTGGGATGGGACTCTAG-CTCAG  842
      ||||||||||||||||||||||| |||||||||||||||||||| || ||
seq2  TGTGGCTCCTGTATTAAAATCAGTTTTCTGGGATGGGACTCTAGTCTTAG  850

seq1  TAGCAGATTACTTACCAAG-CTACAGTAACTT-CCTGATGTACTCCAGCA  890
      ||||||| ||||||||||| |||||||||||| |||||||||||||||||
seq2  TAGCAGAATACTTACCAAGTCTACAGTAACTTCCCTGATGTACTCCAGCA  900

seq1  TTG-CCAAAACAATAAAAAATAAAAATAAAATAAAATAAACCATT-CCTC  938
      ||| |||||||||||||||||||||||||| |  ||| ||||||| ||||
seq2  TTGCCCAAAACAATAAAAAATAAAAATAAATT--AATTAACCATTCCCTC  948

seq1  CATTTCTCCCATCTCTCTACTTTCTTCT-AGTTCAA-CTG-CTTTCTGAT  985
      ||||||  |||||||||||||||||||| || |||| ||| ||| | |||
seq2  CATTTCCTCCATCTCTCTACTTTCTTCTAAGGTCAACCTGCCTTACGGAT  998

seq1  -GGCCAAATTTGAGAATGTTCCTCTTAAACTAAATTCTTTAA  1026
       ||||||||| |||||||||||||| ||||||||||||||||
seq2  GGGCCAAATTGGAGAATGTTCCTCTAAAACTAAATTCTTTAA  1040