BAC Information

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BAC

Clone NameB6Ng01-239A12
Chromosome6 (Build37)
Map Location 66,934,457 - 67,086,319
singlet/doubletdoublet
Overlap geneGng12, LOC100042837, Gadd45a, E230016M11Rik
Upstream genePpia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik
Downstream geneEG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239A12.bB6Ng01-239A12.g
ACCGA049566GA049567
length483843
definitionB6Ng01-239A12.b B6Ng01-239A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,085,831 - 67,086,319)(66,934,457 - 66,935,298)
sequence
ttgcagcagccccaagaggcaactatctttgtgattacattttatagaaa
gaaggaaaacaaaacacaaaggttaaaagactttttcagagccacaaagc
cagaaagtccccgtgattcaaaacgtagcagcctggttctgaagtccatt
ctctaactaatacattgcatgtctgctcttcctctattgccccccccccc
cgctccccagttctctctctctgaccgtccctcccttttttcttcttgcc
tcctcccacctttatttctacttgcctctccccacctttatttctagata
ggctctcactatgtagcactggccagcttagaacttgatatgtagaccag
gctgacatctaactcccagaatctacccacatctcctgaatgctgagatt
taagacatgtgtcaccacactcaattttgtagatttcttttcttctcctt
tccttctttcctttccttccctccctccctccc
gaattcttcaggcatcgcttctggatgctggtctctggttcctggcctgc
ctggcccgccagtggaagtcattctccagacagattagcctgtggttggg
ttctgctcatcttcccccttgtgttttgtgaaaccggtcctgtgttcctc
aggatgagctgagaagaaaaataatcagctacaggaattttctaatttcc
aaaatgaccctcagtattttgttgcattgcccgtcccctccccattttcc
cctcttcttgtaaagactttaaatatctcaaaattaaaatcaggaaaata
ggctagccacctgtgtagcaaggctgattgcacatggtgtgtgtattgct
atgtgaaacagcaatttgtagcactgtatacaaatagaccgcatttgttt
aaaaactcctatctatgcatatggtatgtttgtaaaaggcagctgagggt
gtggtggaggaaagattctagacagtggctgccctttggagtgagcttag
aaggaaggaattgtagctttttgtttggttcacatgagtatagtgggggt
ttgcagcatatttcttgtttcattttttaaaatgccttcatttttaaaaa
cgaagaaaaggcaaatacctgagctggcttcaaacaaccggggctaacta
gtgtaatgtctagaagctgggtctagcctggctgctgtaaggttttccct
gaaggagctcagacagaacatgaattcattttgggtactttggtcctgcc
tagcacacactgctggagccgcagactgcctctggagcattcaagtgggc
agtgtgccttgcctgctcctcttccttggtggggggtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_67085831_67086319
seq2: B6Ng01-239A12.b_48_536 (reverse)

seq1  GGGAGGGAGGGAGGGAAGGAAAGGAAAGAAGGAAAGGAGAAGAAAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAGGGAGGGAAGGAAAGGAAAGAAGGAAAGGAGAAGAAAAGAAA  50

seq1  TCTACAAAATTGAGTGTGGTGACACATGTCTTAAATCTCAGCATTCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAATTGAGTGTGGTGACACATGTCTTAAATCTCAGCATTCAGGA  100

seq1  GATGTGGGTAGATTCTGGGAGTTAGATGTCAGCCTGGTCTACATATCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGGTAGATTCTGGGAGTTAGATGTCAGCCTGGTCTACATATCAAG  150

seq1  TTCTAAGCTGGCCAGTGCTACATAGTGAGAGCCTATCTAGAAATAAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGCTGGCCAGTGCTACATAGTGAGAGCCTATCTAGAAATAAAGGT  200

seq1  GGGGAGAGGCAAGTAGAAATAAAGGTGGGAGGAGGCAAGAAGAAAAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAGGCAAGTAGAAATAAAGGTGGGAGGAGGCAAGAAGAAAAAAGG  250

seq1  GAGGGACGGTCAGAGAGAGAGAACTGGGGAGCGGGGGGGGGGGGCAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACGGTCAGAGAGAGAGAACTGGGGAGCGGGGGGGGGGGGCAATAG  300

seq1  AGGAAGAGCAGACATGCAATGTATTAGTTAGAGAATGGACTTCAGAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGCAGACATGCAATGTATTAGTTAGAGAATGGACTTCAGAACCA  350

seq1  GGCTGCTACGTTTTGAATCACGGGGACTTTCTGGCTTTGTGGCTCTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTACGTTTTGAATCACGGGGACTTTCTGGCTTTGTGGCTCTGAAA  400

seq1  AAGTCTTTTAACCTTTGTGTTTTGTTTTCCTTCTTTCTATAAAATGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTTAACCTTTGTGTTTTGTTTTCCTTCTTTCTATAAAATGTAAT  450

seq1  CACAAAGATAGTTGCCTCTTGGGGCTGCTGCAAGAATTC  489
      |||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGATAGTTGCCTCTTGGGGCTGCTGCAAGAATTC  489

seq1: chr6_66934457_66935298
seq2: B6Ng01-239A12.g_68_910

seq1  GAATTCTTCAGGCATCGCTTCTGGATGCTGGTCTCTGGTTCCTGGCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGGCATCGCTTCTGGATGCTGGTCTCTGGTTCCTGGCCTGC  50

seq1  CTGGCCCGCCAGTGGAAGTCATTCTCCAGACAGATTAGCCTGTGGTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCGCCAGTGGAAGTCATTCTCCAGACAGATTAGCCTGTGGTTGGG  100

seq1  TTCTGCTCATCTTCCCCCTTGTGTTTTGTGAAACCGGTCCTGTGTTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCATCTTCCCCCTTGTGTTTTGTGAAACCGGTCCTGTGTTCCTC  150

seq1  AGGATGAGCTGAGAAGAAAAATAATCAGCTACAGGAATTTTCTAATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAGCTGAGAAGAAAAATAATCAGCTACAGGAATTTTCTAATTTCC  200

seq1  AAAATGACCCTCAGTATTTTGTTGCATTGCCCGTCCCCTCCCCATTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACCCTCAGTATTTTGTTGCATTGCCCGTCCCCTCCCCATTTTCC  250

seq1  CCTCTTCTTGTAAAGACTTTAAATATCTCAAAATTAAAATCAGGAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTTGTAAAGACTTTAAATATCTCAAAATTAAAATCAGGAAAATA  300

seq1  GGCTAGCCACCTGTGTAGCAAGGCTGATTGCACATGGTGTGTGTATTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCCACCTGTGTAGCAAGGCTGATTGCACATGGTGTGTGTATTGCT  350

seq1  ATGTGAAACAGCAATTTGTAGCACTGTATACAAATAGACCGCATTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAACAGCAATTTGTAGCACTGTATACAAATAGACCGCATTTGTTT  400

seq1  AAAAACTCCTATCTATGCATATGGTATGTTTGTAAAAGGCAGCTGAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCCTATCTATGCATATGGTATGTTTGTAAAAGGCAGCTGAGGGT  450

seq1  GTGGTGGAGGAAAGATTCTAGACAGTGGCTGCCCTTTGGAGTGAGCTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGAGGAAAGATTCTAGACAGTGGCTGCCCTTTGGAGTGAGCTTAG  500

seq1  AAGGAAGGAATTGTAGCTTTTTGTTTGGTTCACATGAGTATAGTGGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAATTGTAGCTTTTTGTTTGGTTCACATGAGTATAGTGGGGGT  550

seq1  TTGCAGCATATTTCTTGTTTCATTTTTTAAAATGCCTTCATTTTTAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCATATTTCTTGTTTCATTTTTTAAAATGCCTTCATTTTTAAAAA  600

seq1  CGAAGAAAAGGCAAATACCTGAGCTGGCTTCAAACAACCGGGGCTAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGAAAAGGCAAATACCTGAGCTGGCTTCAAACAACCGGGGCTAACTA  650

seq1  GTGTAATGTCTAGAAGCTGGGTCTAGCCTGGCTGCTGTAAGGTTTTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATGTCTAGAAGCTGGGTCTAGCCTGGCTGCTGTAAGGTTTTCCCT  700

seq1  GAAGGAGCTCAGACAGAACATGAATTCATTTTGGGTACTTTGGTCCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGCTCAGACAGAACATGAATTCATTTTGGGTACTTTGGTCCTGCC  750

seq1  TAGCACACACTGCTGGAGCCGCAGACTGCCTCTGGAGCATTCAAGTGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACACACTGCTGGAGCCGCAGACTGCCTCTGGAGCATTCAAGTGGGC  800

seq1  AGTGTGCCTTGCCTGCTCCTCTTCCTTGGT-GGGGGTGGGGGG  842
      |||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTGTGCCTTGCCTGCTCCTCTTCCTTGGTGGGGGGTGGGGGG  843