BAC Information

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BAC

Clone NameB6Ng01-239E21
Chromosome6 (Build37)
Map Location 133,186,826 - 133,312,639
singlet/doubletdoublet
Overlap gene5530400C23Rik
Upstream geneLOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618
Downstream geneEG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239E21.bB6Ng01-239E21.g
ACCGA049766GA049767
length1,2341,142
definitionB6Ng01-239E21.b B6Ng01-239E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,311,442 - 133,312,639)(133,186,826 - 133,187,975)
sequence
gaattcattgtttttaatagctgagtagtactccattgtgtacatgtctc
acattttctgtatctatttctttgttgagggacacctgggttctttccag
cttctggaataataaataaggcttctatgaccatagtggagcgaaaacta
ggttttctactgaattttattgctctgatcagggtctaagggtcaacagg
atgtcttgtttctgacatttgaatgggagtcattactcccattcctttct
atcaaaatgacaataagaaggcactttaaatccaagaaattctgaggagg
aggagaaatatttgaaggaaggaaatgttgctcagactagcctcaacctt
aatgtgtagtagagaatgacattgaattcctgattttcctaggtaaggat
gggattataggaatgagaaatcatacctggttttattctccatttttcaa
tactcgtttctgtttacccctttctatcattaagcagtttgtgcctgttt
acatgctttcaggatttgaatataagaatataacttttgggcaaaattac
atatactatttgtttcattttgaaatagtgaatatgagaattgtgtacaa
aggatcctgacatttcttcttttcaagaatataacattccttatgtgaca
ctctgcctctgaaggaagtgtgataggtttttatctcttttatatctcct
tcatcgaatatagctagttataactattgtgtgctttgattatcaagata
ttttcatagttggtttttttaatcagccttgctccttcccatgaagccag
accacataacaagatctctttaggaatgaaactcttgctgctttgttcca
cctttaacacagttttaaatatatactaatagcaaacaattcttgattcc
tagtgaggacataactgatctcacctttgtcctgtgaactgaaaagccag
atattcttcactgttacttcccttcattctgcttttcctctagcactgtg
gactcctatgccccaatcaccagtccacaaaccatccatattccaattcc
tccataagctttcatcttggtgcctgttgaaatgagcctcaagaagccag
cagaggtatgggacctaccattgtaatcctggagaccatcctctctctgg
aattatcctcttccatgtgtgtgaatgcaaagcccaagaaatcctgctta
tagaggagccaaaggccattgggagagccttcac
gaattcagaagacagaagaccaaagaaagattgcttctgttgttctataa
atgaagtcaaatcaaagggtaatcattgttaccaaataaattaataaaat
aaataaaaaataaaggagcaataggtcacaaaggagatatggagctatgt
tcctcaggggcacaagtacatttggagatcttggcaatattatcttggac
catcaaaaatgtatgactttgtactgtctaaatgctaagatttgaaatga
gcctgaggcagatgccatgtccatatgctgccagttagcaagtttttaca
ctatgatttgacaaatactgagataaggttagtgctcaactgtctctgtc
ttggaagaaatattcagaataagttacgacttccctataagttgtgcatc
tatcacttttcccagatgctggtaccaaacacagtatcatttggggtatt
gttcagaccatgttatattttcatattttctctcttaatcacatttttag
caagttacaaaaatcattttagttgctattaacacaggtatagacttttt
gaaaatctatttgacattaacttcattatgcccctttcctggaataaatt
ttcttacccacagaggtttggtatcattattcccttcaatgacttttctt
atttatctccctcacaaagccatgtggtcctttgtaagcagagttgagac
cacttctgattcttgcttttgaaagactctgttttcaaattttgcctgat
gtaagttgcaatcatcaaacctcagctctgaagaggaccacctgtacttc
tcttttgcaagactaacaaggacattaaatgtgccaaaatgtagaaacta
gcccaaacttcacatcactagtctccagtgtgtttggaaactgaaatgag
gtttacaggcatgaaaagtgagagggcagctcaccttgagttaggaggga
gtgaattgcaccaggttctatgttctggggagcgtttttgtgtaaaggta
ttgactaagcattttggaaatatcagtaacaataaaacatctctcagaat
ttttattgtagtcttagcagtggataatgagaacataatagaaagtttag
gacaattgatacataaggtgacatcctgaatatatagcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_133311442_133312639
seq2: B6Ng01-239E21.b_42_1275 (reverse)

seq1  GTGAAG---CTCCCA--TGCCTTT-GCTCCTCTTATTAAGCAGGATTTCT  44
      ||||||   ||||||   |||||| ||||||||   ||||||||||||||
seq2  GTGAAGGCTCTCCCAATGGCCTTTGGCTCCTCT--ATAAGCAGGATTTCT  48

seq1  TGGGCTCTCCAT---CACACACTGAAGAG--AAAATCC----AGAGGATG  85
      |||||| | |||   ||||||  ||||||   || |||    ||||||||
seq2  TGGGCTTTGCATTCACACACATGGAAGAGGATAATTCCAGAGAGAGGATG  98

seq1  --CTCCAAGA-TACA--TGTA-GTCCTA---CTCTGCT-GCTTC-TGA-G  123
        ||||| || ||||   ||| |||| |   ||||||| ||||| ||| |
seq2  GTCTCCAGGATTACAATGGTAGGTCCCATACCTCTGCTGGCTTCTTGAGG  148

seq1  CTCATTTC-ACA-GCAC--AGATG-AAGC-TATG--AGAATTTGAATATG  165
      |||||||| ||| ||||  ||||| |||| ||||   ||||| |||||||
seq2  CTCATTTCAACAGGCACCAAGATGAAAGCTTATGGAGGAATTGGAATATG  198

seq1  GAT-GTTTGT-GACT-GTGATTGGGGCATAGGAGTCCACAGTGCTTAGA-  211
      ||| |||||| |||| |||||||||||||||||||||||||||| |||| 
seq2  GATGGTTTGTGGACTGGTGATTGGGGCATAGGAGTCCACAGTGC-TAGAG  247

seq1  GAAAAGCAGAATGAAGGGAAGTAACAGTGAAGAATATCTGGCTTTTCAGT  261
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAGAATGAAGGGAAGTAACAGTGAAGAATATCTGGCTTTTCAGT  297

seq1  TCACAGGACAAAGGTGAGATCAGTTATGTCCTCACTAGGAATCAAGAATT  311
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGACAAAGGTGAGATCAGTTATGTCCTCACTAGGAATCAAGAATT  347

seq1  GTTTGCTATTAGTATATATTTAAAACTGTGTTAAAGGTGGAACAAAGCAG  361
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTATTAGTATATATTTAAAACTGTGTTAAAGGTGGAACAAAGCAG  397

seq1  CAAGAGTTTCATTCCTAAAGAGATCTTGTTATGTGGTCTGGCTTCATGGG  411
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTTTCATTCCTAAAGAGATCTTGTTATGTGGTCTGGCTTCATGGG  447

seq1  AAGGAGCAAGGCTGATTAAAAAAACCAACTATGAAAATATCTTGATAATC  461
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCAAGGCTGATTAAAAAAACCAACTATGAAAATATCTTGATAATC  497

seq1  AAAGCACACAATAGTTATAACTAGCTATATTCGATGAAGGAGATATAAAA  511
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACACAATAGTTATAACTAGCTATATTCGATGAAGGAGATATAAAA  547

seq1  GAGATAAAAACCTATCACACTTCCTTCAGAGGCAGAGTGTCACATAAGGA  561
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAAAACCTATCACACTTCCTTCAGAGGCAGAGTGTCACATAAGGA  597

seq1  ATGTTATATTCTTGAAAAGAAGAAATGTCAGGATCCTTTGTACACAATTC  611
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATATTCTTGAAAAGAAGAAATGTCAGGATCCTTTGTACACAATTC  647

seq1  TCATATTCACTATTTCAAAATGAAACAAATAGTATATGTAATTTTGCCCA  661
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTCACTATTTCAAAATGAAACAAATAGTATATGTAATTTTGCCCA  697

seq1  AAAGTTATATTCTTATATTCAAATCCTGAAAGCATGTAAACAGGCACAAA  711
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATATTCTTATATTCAAATCCTGAAAGCATGTAAACAGGCACAAA  747

seq1  CTGCTTAATGATAGAAAGGGGTAAACAGAAACGAGTATTGAAAAATGGAG  761
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTAATGATAGAAAGGGGTAAACAGAAACGAGTATTGAAAAATGGAG  797

seq1  AATAAAACCAGGTATGATTTCTCATTCCTATAATCCCATCCTTACCTAGG  811
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACCAGGTATGATTTCTCATTCCTATAATCCCATCCTTACCTAGG  847

seq1  AAAATCAGGAATTCAATGTCATTCTCTACTACACATTAAGGTTGAGGCTA  861
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGGAATTCAATGTCATTCTCTACTACACATTAAGGTTGAGGCTA  897

seq1  GTCTGAGCAACATTTCCTTCCTTCAAATATTTCTCCTCCTCCTCAGAATT  911
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGCAACATTTCCTTCCTTCAAATATTTCTCCTCCTCCTCAGAATT  947

seq1  TCTTGGATTTAAAGTGCCTTCTTATTGTCATTTTGATAGAAAGGAATGGG  961
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGATTTAAAGTGCCTTCTTATTGTCATTTTGATAGAAAGGAATGGG  997

seq1  AGTAATGACTCCCATTCAAATGTCAGAAACAAGACATCCTGTTGACCCTT  1011
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGACTCCCATTCAAATGTCAGAAACAAGACATCCTGTTGACCCTT  1047

seq1  AGACCCTGATCAGAGCAATAAAATTCAGTAGAAAACCTAGTTTTCGCTCC  1061
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGATCAGAGCAATAAAATTCAGTAGAAAACCTAGTTTTCGCTCC  1097

seq1  ACTATGGTCATAGAAGCCTTATTTATTATTCCAGAAGCTGGAAAGAACCC  1111
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGTCATAGAAGCCTTATTTATTATTCCAGAAGCTGGAAAGAACCC  1147

seq1  AGGTGTCCCTCAACAAAGAAATAGATACAGAAAATGTGAGACATGTACAC  1161
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCCCTCAACAAAGAAATAGATACAGAAAATGTGAGACATGTACAC  1197

seq1  AATGGAGTACTACTCAGCTATTAAAAACAATGAATTC  1198
      |||||||||||||||||||||||||||||||||||||
seq2  AATGGAGTACTACTCAGCTATTAAAAACAATGAATTC  1234

seq1: chr6_133186826_133187975
seq2: B6Ng01-239E21.g_67_1208

seq1  GAATTCAGAAGACAGAAGACCAAAGAAAGATTGCTTCTGTTGTTCTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGACAGAAGACCAAAGAAAGATTGCTTCTGTTGTTCTATAA  50

seq1  ATGAAGTCAAATCAAAGGGTAATCATTGTTACCAAATAAATTAATAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCAAATCAAAGGGTAATCATTGTTACCAAATAAATTAATAAAAT  100

seq1  AAATAAAAAATAAAGGAGCAATAGGTCACAAAGGAGATATGGAGCTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAATAAAGGAGCAATAGGTCACAAAGGAGATATGGAGCTATGT  150

seq1  TCCTCAGGGGCACAAGTACATTTGGAGATCTTGGCAATATTATCTTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGGGGCACAAGTACATTTGGAGATCTTGGCAATATTATCTTGGAC  200

seq1  CATCAAAAATGTATGACTTTGTACTGTCTAAATGCTAAGATTTGAAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAAATGTATGACTTTGTACTGTCTAAATGCTAAGATTTGAAATGA  250

seq1  GCCTGAGGCAGATGCCATGTCCATATGCTGCCAGTTAGCAAGTTTTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGGCAGATGCCATGTCCATATGCTGCCAGTTAGCAAGTTTTTACA  300

seq1  CTATGATTTGACAAATACTGAGATAAGGTTAGTGCTCAACTGTCTCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATTTGACAAATACTGAGATAAGGTTAGTGCTCAACTGTCTCTGTC  350

seq1  TTGGAAGAAATATTCAGAATAAGTTACGACTTCCCTATAAGTTGTGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGAAATATTCAGAATAAGTTACGACTTCCCTATAAGTTGTGCATC  400

seq1  TATCACTTTTCCCAGATGCTGGTACCAAACACAGTATCATTTGGGGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTTTTCCCAGATGCTGGTACCAAACACAGTATCATTTGGGGTATT  450

seq1  GTTCAGACCATGTTATATTTTCATATTTTCTCTCTTAATCACATTTTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGACCATGTTATATTTTCATATTTTCTCTCTTAATCACATTTTTAG  500

seq1  CAAGTTACAAAAATCATTTTAGTTGCTATTAACACAGGTATAGACTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTACAAAAATCATTTTAGTTGCTATTAACACAGGTATAGACTTTTT  550

seq1  GAAAATCTATTTGACATTAACTTCATTATGCCCCTTTCCTGGAATAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTATTTGACATTAACTTCATTATGCCCCTTTCCTGGAATAAATT  600

seq1  TTCTTACCCACAGAGGTTTGGTATCATTATTCCCTTCAATGACTTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCCACAGAGGTTTGGTATCATTATTCCCTTCAATGACTTTTCTT  650

seq1  ATTTATCTCCCTCACAAAGCCATGTGGTCCTTTGTAAGCAGAGTTGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTCCCTCACAAAGCCATGTGGTCCTTTGTAAGCAGAGTTGAGAC  700

seq1  CACTTCTGATTCTTGCTTTTGAAAGACTCTGTTTTCAAATTTTGCCTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTGATTCTTGCTTTTGAAAGACTCTGTTTTCAAATTTTGCCTGAT  750

seq1  GTAAGTTGCAATCATCAAACCTCAGCTCTGAAGAGGACCACCTGTACTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTGCAATCATCAAACCTCAGCTCTGAAGAGGACCACCTGTACTTC  800

seq1  TCTTTTGCAAGACTAACAAGGACATTAAATGTGCCAAAATGTAGAAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGCAAGACTAACAAGGACATTAAATGTGCCAAAATGTAGAAACTA  850

seq1  GCCCAAACTTCACATCACTAGTCTCCAGTGTGTTTGGAAACTGAAATGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAACTTCACATCACTAGTCTCCAGTGTGTTTGGAAACTGAAATGAG  900

seq1  GTTTACAGGCATGAAAAGTGAGAGGGCAGCTCACCTTGAGTTAGGAGGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAGGCATGAAAAGTGAGAGGGCAGCTCACCTTGAGTTAGGAGGGA  950

seq1  GTGAATTGCACCAGGTTCTTATGTTCTGGGAAGCGTTTTTGTGTAAAGGT  1000
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  GTGAATTGCACCAGGTTC-TATGTTCTGGGGAGCGTTTTTGTGTAAAGGT  999

seq1  ATTGACTAAGCATTTTGGAAATATCAGTAACAATAAAACATCTCTCAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTAAGCATTTTGGAAATATCAGTAACAATAAAACATCTCTCAGAA  1049

seq1  -TTTTATTGTAGTCTTAGCAGTTGGATTATAGAGAACATAAATAGAAAGT  1099
       |||||||||||||||||||| ||||| || |||||||| ||||||||||
seq2  TTTTTATTGTAGTCTTAGCAG-TGGATAAT-GAGAACAT-AATAGAAAGT  1096

seq1  TTAGGGACAAATTTGGATACATA--GTGACCATCCTGGAATATATAAGCA  1147
      ||| ||||||   | ||||||||  |||| |||||| |||||||| ||||
seq2  TTA-GGACAA---TTGATACATAAGGTGA-CATCCT-GAATATAT-AGCA  1139

seq1  CTT  1150
      |||
seq2  CTT  1142