BAC Information

Click to search

BAC

Clone NameB6Ng01-239G20
Chromosome1 (Build37)6 (Build37)
Map Location 103,360,065 - 103,360,76953,744,091 - 53,744,253
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneC230078M14Rik, LOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239G20.bB6Ng01-239G20.g
ACCGA049854GA049855
length710979
definitionB6Ng01-239G20.b B6Ng01-239G20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(103,360,065 - 103,360,769)(53,744,091 - 53,744,253)
sequence
gaattcatgggcaaaagtatgaggcagctggacaccgtgcagccatagtt
aggaaacataaaaatgaatgctgatgctctgctcactttctctttttcat
tcagcccatgactcaagtcatggacttccacatctttctgaaaacacaca
caacaagaggtgtgatctttcattgtgattctaaatcaaatttaaaatta
agataagccatctcagcccctagctcttccttcataaccattgccacagt
tccctgagaagtatgttttccacattgatttatttctagtaagcactgaa
taagtacactgtcaggtgttgttgtaggtgttgctcaggtatctgaaact
taaagcgcagagttttgctaaaatgcaaagtgtagcttctcttgggaagg
tgtcagggatggtacaatcgtcctaagcaatgcaatgaaattcttcaaat
aagaaagagggagcacactgtgatgcctcacattatttgaggataaaaga
aagaagggtttatagaaaaagaaatctgattgtgagaaaaagaatcattt
ttatgcttacaaagccagccacaagacatgacttactatataaacttgaa
tatacttctgatctcaaatcactctgcctggaatcattctgcctggatgg
tggccaaaacttctttaataaaatatttatttttagttttcgtgtgtgtg
tgtgtgtgtg

gaattcataccattgtgtctttctctaacattgttcttatggtttaaaat
ttttccttaatgggtgtaaagggatgtaagatgtggcagtggagtttgac
aaagttaagttgtagagttagcaaataccacacatccccaatagatatag
ttagtaagttatagtgaatcaaaatttacaatagctttccttggatttgt
tttttcattttacaaatcttaaatttttattccttctccaactattatct
ttaactattattctgacacaatgtagaaacacgtgaacagatttcccctg
aggaattatttacaataagtgtgactgtgtatatgaatatggagaattgt
cttaattgaattaattgatgtgggtcaattcagggtatcattccccagct
agaggtccatgaagattggagtcatcaagctgagcataagccagtgtctt
agcctgtgctctattgttgtgaaaaaaaatcatctccacgtcaactctta
taaacgaaacattttttttatttggatattttctttatttacatttcaaa
tgttttcccctttccaggtctctcctttggagacttcctataccattccc
cctccccctgcatatatgagggtgcttccccattcacccactcccgtcct
catgtcctggcattcccctacacaggggtatagaacacccacaggcacaa
gagcctctcttcccattgatgaccaacaggggtatcctctgccacgtatg
ttgctagtgccattggccgctccatgtgcttttttgttttttgttttttt
ggttttttttttggttggtggtccagctccctggagctccagagggtctg
acctgttaacactgttgctccctcctgggagcaaactacctggggctgca
aactacctcagctccttcagtttccttctccaactcctccattgaggact
tccgagctgtgtccaatggttggttgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_103360065_103360769
seq2: B6Ng01-239G20.b_43_752

seq1  GAATTCATGGGCAAAAGTATGAGGCAGCTGGACACCGTGCAGCCATAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGCAAAAGTATGAGGCAGCTGGACACCGTGCAGCCATAGTT  50

seq1  AGGAAACATAAAAATGAATGCTGATGCTCTGCTCACTTTCTCTTTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACATAAAAATGAATGCTGATGCTCTGCTCACTTTCTCTTTTTCAT  100

seq1  TCAGCCCATGACTCAAGTCATGGACTTCCACATCTTTCTGAAAACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCATGACTCAAGTCATGGACTTCCACATCTTTCTGAAAACACACA  150

seq1  CAACAAGAGGTGTGATCTTTCATTGTGATTCTAAATCAAATTTAAAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGAGGTGTGATCTTTCATTGTGATTCTAAATCAAATTTAAAATTA  200

seq1  AGATAAGCCATCTCAGCCCCTAGCTCTTCCTTCATAACCATTGCCACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGCCATCTCAGCCCCTAGCTCTTCCTTCATAACCATTGCCACAGT  250

seq1  TCCCTGAGAAGTATGTTTTCCACATTGATTTATTTCTAGTAAGCACTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAGAAGTATGTTTTCCACATTGATTTATTTCTAGTAAGCACTGAA  300

seq1  TAAGTACACTGTCAGGTGTTGTTGTAGGTGTTGCTCAGGTATCTGAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACACTGTCAGGTGTTGTTGTAGGTGTTGCTCAGGTATCTGAAACT  350

seq1  TAAAGCGCAGAGTTTTGCTAAAATGCAAAGTGTAGCTTCTCTTGGGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCGCAGAGTTTTGCTAAAATGCAAAGTGTAGCTTCTCTTGGGAAGG  400

seq1  TGTCAGGGATGGTACAATCGTCATAA-----GCAATGAAATTCTTCAAAT  445
      |||||||||||||||||||||| |||     |||||||||||||||||||
seq2  TGTCAGGGATGGTACAATCGTCCTAAGCAATGCAATGAAATTCTTCAAAT  450

seq1  AAGAAAGAGGGAGCACACTGTGATGCCTCACATTATTTGAGGATAAAAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAGGGAGCACACTGTGATGCCTCACATTATTTGAGGATAAAAGA  500

seq1  AAGAAGGGTTTATAGAAAAAGAAATCTGATTGTGAGAAAAAGAATCATTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGTTTATAGAAAAAGAAATCTGATTGTGAGAAAAAGAATCATTT  550

seq1  TTATGCTTACAAAGCCAGCCACAAGACATGACTTACTATATAAACTTGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTTACAAAGCCAGCCACAAGACATGACTTACTATATAAACTTGAA  600

seq1  TATACTTCTGATCTCAAATCACTCTGCCTGGAATCATTCTGCCTGGATGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTCTGATCTCAAATCACTCTGCCTGGAATCATTCTGCCTGGATGG  650

seq1  TGGCCAAAACTTCTTTAATAAAATATTTATTTTTAGTTTTCGTGTGTGTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAAACTTCTTTAATAAAATATTTATTTTTAGTTTTCGTGTGTGTG  700

seq1  TGTGTGTGTG  705
      ||||||||||
seq2  TGTGTGTGTG  710


seq1: chr6_53744091_53744253
seq2: B6Ng01-239G20.g_591_924 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  GTTAACAGGTCAGACCCTCTGGAGCTCCAGGGAGCTGGACCACCAACCAA  50

seq1  --------------------------------------------------  0
                                                        
seq2  AAAAAAAACCAAAAAAACAAAAAACAAAAAAGCACATGGAGCGGCCAATG  100

seq1  -------------------------------------GTTAACA--GGTC  11
                                           || | ||  ||  
seq2  GCACTAGCAACATACGTGGCAGAGGATACCCCTGTTGGTCATCAATGGGA  150

seq1  AGACCACACTTTTTTAGCC---------TCTGTCCTCCTCT--------A  44
      |||  |  || || | |||         ||| | | ||| |        |
seq2  AGA-GAGGCTCTTGT-GCCTGTGGGTGTTCTATACCCCTGTGTAGGGGAA  198

seq1  AGGCTGTCCTTAA---------------AGTCGGGAAGCACCTTCATAGA  79
       | | |  | | |               | | |||||||||| ||||| |
seq2  TGCCAGGACATGAGGACGGGAGTGGGTGAATGGGGAAGCACCCTCATATA  248

seq1  GGCAGGGGGAGAGG--ATGGAATAGGGGGTTTCTGAAGGGGAGACCTGGA  127
       |||||||||| ||  |||| |||||  || ||  |||| ||||||||||
seq2  TGCAGGGGGAGGGGGAATGGTATAGGAAGTCTCCAAAGGAGAGACCTGGA  298

seq1  AAGGGGAAAACATTTGAAATGTAAATAAAGAAAATA  163
      ||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAAACATTTGAAATGTAAATAAAGAAAATA  334


| Home | SequenceCutter | Blast | Download |