BAC Information

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BAC

Clone NameB6Ng01-239L23
Chromosome6 (Build37)
Map Location 115,717,466 - 115,869,619
singlet/doubletdoublet
Overlap geneEG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122
Upstream geneAtg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40
Downstream geneRho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239L23.bB6Ng01-239L23.g
ACCGA050093GA050094
length7391,154
definitionB6Ng01-239L23.b B6Ng01-239L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,868,885 - 115,869,619)(115,717,466 - 115,718,613)
sequence
gaattcctagttacatttctttcaggggttgtttgtttagttttttcccc
tttcctcctttttgcttttgagaaaaggtctttatcttaggttggcctga
atctcccttaggtagctaggatgaccgtcctgcctccatctcctgagtgc
tggtttgcccatttgcatttctacagtttctgttggctccaggaactgaa
agaaactcgtgctctcctgggtgtgagctggaagagtccaggcctaggga
agcaatagtctgggtcaccaatgcttctctagggaagaagcaatgagccg
caggaaaaatctgtgtccctctctgccttcttttttctttaattttaatt
tatttatttattttttttgttgttgtttttctgagacagggtttctctgt
gtagccctggctgtcctggaactcactttgtagaccaggctggcctcgaa
ctcagaaatccgcctgcctctgcctcccgagtgctgggattaaaggcgtg
cgcacctcctctctgccttcttaggagcggctcctgcttggccccaatgt
caactcctccactgtgctggccaccaggcctttgccagaccatagtctgc
ctgccacaaatcctttcccctccccttcttcacttgtgcccctctttggt
ggaggggatcacctcctctcaaagaagccacctcaaagcttttcccatga
ggggctgtcctgcttactatagggggtggggggtggggg
gaattccgattggtggttatgattcggctagtaagtgcacttgctcgccg
ggctgaccgctggcgtcagataaaaagggaactgcctcctggaagttgcc
ctttgacctccgcatctatatcacaatgactggggagtcgcggtagcaag
tgggcagagcaggaagctggcagatgacatccaggtagcacaaaggaagc
aaagagaatgaatctgaaataacacaagaccagaaactctcaaagcctga
ccccattgacagacacacttcctccagccaagctaagaagtccctaacct
gccctggagcgacggctcagcagttaagagcatgtgctgctctttcgggg
acccaggttcagttgccagcattcatatggtgcctcagaaactatccata
gctcaggtccccaaggatctggtgctttcttctcacctccttggcatcag
gtattcagatggtagacatgcgggtaccacaagcaaacacataaagtaaa
ataaattaaagtctttttttttttttttcgagacaggatttctctgtata
gccctgaatgagaaacctggctgtcctggaactcactttgtagaccaggc
tggcctcaaactcagaaatctgcctgcttctgcctcccaaattctgggat
taaaggcgtgagccaccacgcccagctaataaattaaaatcttaaaaaaa
aaaatgtccataacttccccacacaggatcaccaataggagaccaagtgt
ttaaatacatgagcctatgggtgacatttctcattcaaacaactacatgt
gggctccagggttggactcaggttgctggcttgcacagcgagaactttta
ccagtggaaccatcttgcaagctcttctacactgtgagccttgaggctag
gccttatcaaggctatgcccacttgcagcagcagccttttcttgtagctg
ctatacagggaaatgacaaggcctcctccaagatccctgtctgtgaggct
tgtaaacagacttcacagctgccaagaatcccagaagatgacaggtacca
cctgcacttcctcaaggaagtgtagcgcagaactcaagttggcagactcg
gaggtatcagaagagcctaccgacattcctggcctgaccacttcaccatc
tatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_115868885_115869619
seq2: B6Ng01-239L23.b_43_780 (reverse)

seq1  CCCCA-CCCCCACCCCCTATAGTAAGCAGGACAGCCCCTCATGGGAAAAG  49
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCCCACCCCCTATAGTAAGCAGGACAGCCCCTCATGGGAAAAG  50

seq1  CTTTGAGGTGGCTTCTTTGAGAGGAGGTGAT-CCCTCCACCAAAGAGGGG  98
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTTGAGGTGGCTTCTTTGAGAGGAGGTGATCCCCTCCACCAAAGAGGGG  100

seq1  CACAAGTGAAGAAGGGGAGGGGAAAGGATTTGTGGCAGGCAGACTATGGT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTGAAGAAGGGGAGGGGAAAGGATTTGTGGCAGGCAGACTATGGT  150

seq1  CTGGCAAAGGCCTGGTGGCCAGCACAGTGGAGGAGTTGACATTGGGGCCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAAGGCCTGGTGGCCAGCACAGTGGAGGAGTTGACATTGGGGCCA  200

seq1  AGCAGGAGCCGCTCCTAAGAAGGCAGAGAGGAGGTGCGCACGCCTTTAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGCCGCTCCTAAGAAGGCAGAGAGGAGGTGCGCACGCCTTTAAT  250

seq1  CCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGC  300

seq1  CTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCC  350

seq1  TGTCTCAGAAAAACAACAACAAAAAAAATAAATAAATAAATTAAAATTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGAAAAACAACAACAAAAAAAATAAATAAATAAATTAAAATTAA  400

seq1  AGAAAAAAGAAGGCAGAGAGGGACACAGATTTTTCCTGCGGCTCATTGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAGAAGGCAGAGAGGGACACAGATTTTTCCTGCGGCTCATTGCT  450

seq1  TCTTCCCTAGAGAAGCATTGGTGACCCAGACTATTGCTTCCCTAGGCCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTAGAGAAGCATTGGTGACCCAGACTATTGCTTCCCTAGGCCTG  500

seq1  GACTCTTCCAGCTCACACCCAGGAGAGCACGAGTTTCTTTCAGTTCCTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCCAGCTCACACCCAGGAGAGCACGAGTTTCTTTCAGTTCCTGG  550

seq1  AGCCAACAGAAACTGTAGAAATGCAAATGGGCAAACCAGCACTCAGGAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACAGAAACTGTAGAAATGCAAATGGGCAAACCAGCACTCAGGAGA  600

seq1  TGGAGGCAGGACGGTCATCCTAGCTACCTAAGGGAGATTCAGGCCAACCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCAGGACGGTCATCCTAGCTACCTAAGGGAGATTCAGGCCAACCT  650

seq1  AAGATAAAGACCTTTTCTCAAAAGCAAAAAGGAGGAAAGGGGAAAAAAC-  697
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGATAAAGACCTTTTCTCAAAAGCAAAAAGGAGGAAAGGGGAAAAAACT  700

seq1  AAACAAACAACCCCTGAAAGAAATGTAACTAGGAATTC  735
      ||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAACCCCTGAAAGAAATGTAACTAGGAATTC  738

seq1: chr6_115717466_115718613
seq2: B6Ng01-239L23.g_66_1219

seq1  GAATTCCGATTGGTGGTTATGATTCGGCTAGTAAGTGCACTTGCTCGCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGATTGGTGGTTATGATTCGGCTAGTAAGTGCACTTGCTCGCCG  50

seq1  GGCTGACCGCTGGCGTCAGATAAAAAGGGAACTGCCTCCTGGAAGTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACCGCTGGCGTCAGATAAAAAGGGAACTGCCTCCTGGAAGTTGCC  100

seq1  CTTTGACCTCCGCATCTATATCACAATGACTGGGGAGTCGCGGTAGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACCTCCGCATCTATATCACAATGACTGGGGAGTCGCGGTAGCAAG  150

seq1  TGGGCAGAGCAGGAAGCTGGCAGATGACATCCAGGTAGCACAAAGGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGAGCAGGAAGCTGGCAGATGACATCCAGGTAGCACAAAGGAAGC  200

seq1  AAAGAGAATGAATCTGAAATAACACAAGACCAGAAACTCTCAAAGCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAATGAATCTGAAATAACACAAGACCAGAAACTCTCAAAGCCTGA  250

seq1  CCCCATTGACAGACACACTTCCTCCAGCCAAGCTAAGAAGTCCCTAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTGACAGACACACTTCCTCCAGCCAAGCTAAGAAGTCCCTAACCT  300

seq1  GCCCTGGAGCGACGGCTCAGCAGTTAAGAGCATGTGCTGCTCTTTCGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGAGCGACGGCTCAGCAGTTAAGAGCATGTGCTGCTCTTTCGGGG  350

seq1  ACCCAGGTTCAGTTGCCAGCATTCATATGGTGCCTCAGAAACTATCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGTTCAGTTGCCAGCATTCATATGGTGCCTCAGAAACTATCCATA  400

seq1  GCTCAGGTCCCCAAGGATCTGGTGCTTTCTTCTCACCTCCTTGGCATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGTCCCCAAGGATCTGGTGCTTTCTTCTCACCTCCTTGGCATCAG  450

seq1  GTATTCAGATGGTAGACATGCGGGTACCACAAGCAAACACATAAAGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAGATGGTAGACATGCGGGTACCACAAGCAAACACATAAAGTAAA  500

seq1  ATAAATTAAAGTCTTTTTTTTTTTTTTTCGAGACAGGATTTCTCTGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAAAGTCTTTTTTTTTTTTTTTCGAGACAGGATTTCTCTGTATA  550

seq1  GCCCTGAATGAGAAACCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAATGAGAAACCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGC  600

seq1  TGGCCTCAAACTCAGAAATCTGCCTGCTTCTGCCTCCCAAATTCTGGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCAAACTCAGAAATCTGCCTGCTTCTGCCTCCCAAATTCTGGGAT  650

seq1  TAAAGGCGTGAGCCACCACGCCCAGCTAATAAATTAAAATCTTAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCGTGAGCCACCACGCCCAGCTAATAAATTAAAATCTTAAAAAAA  700

seq1  AAAATGTCCATAACTTCCCCACACAGGATCACCAATAGGAGACCAAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCCATAACTTCCCCACACAGGATCACCAATAGGAGACCAAGTGT  750

seq1  TTAAATACATGAGCCTATGGGTGACATTTCTCATTCAAACAACTACATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACATGAGCCTATGGGTGACATTTCTCATTCAAACAACTACATGT  800

seq1  GGGCTCCAGGGTTGGACTCAGGTTGCTGGCTTGCACAGCGAGAACTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCAGGGTTGGACTCAGGTTGCTGGCTTGCACAGCGAGAACTTTTA  850

seq1  CCAGTGGAACCATCTTGCAAGCTCTTCTACACTGTGAGCCTTGAGGCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGAACCATCTTGCAAGCTCTTCTACACTGTGAGCCTTGAGGCTAG  900

seq1  GCCTTATC-AGGCTATGCCCACTTGCAGCAGCAGCC-TTTCTTGTAGCTG  948
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  GCCTTATCAAGGCTATGCCCACTTGCAGCAGCAGCCTTTTCTTGTAGCTG  950

seq1  CTATACA-GGAAATGACAAGGCCTCCTCCAAGAT-CCTGTCTGTGAGGC-  995
      ||||||| |||||||||||||||||||||||||| |||||||||||||| 
seq2  CTATACAGGGAAATGACAAGGCCTCCTCCAAGATCCCTGTCTGTGAGGCT  1000

seq1  TGTAAACAGACTCCACAGCTGCCCAGATTCCAGGAGAATGACAGGTACCA  1045
      |||||||||||| |||||||||| ||| |||  ||  |||||||||||||
seq2  TGTAAACAGACTTCACAGCTGCCAAGAATCCCAGAAGATGACAGGTACCA  1050

seq1  ACTGCACTTCCTCAAGGAAGTGTAAGCGCAGACCTCAAGTTGCCAGACTC  1095
       |||||||||||||||||||||| |||||||| ||||||||| |||||||
seq2  CCTGCACTTCCTCAAGGAAGTGT-AGCGCAGAACTCAAGTTGGCAGACTC  1099

seq1  GGAGGTATCAG-AGAG-CTACCGCACATCCCTGGCCTG-GCACATCACCA  1142
      ||||||||||| |||| |||||| |||| |||||||||  ||| ||||||
seq2  GGAGGTATCAGAAGAGCCTACCG-ACATTCCTGGCCTGACCACTTCACCA  1148

seq1  TCTATG  1148
      ||||||
seq2  TCTATG  1154