BAC Information

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BAC

Clone NameB6Ng01-240C01
Chromosome6 (Build37)
Map Location 144,851,785 - 144,852,234
singlet/doubletsinglet
Overlap genenone
Upstream geneSox5, 4933425H06Rik, EG665149
Downstream geneBcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240C01.bB6Ng01-240C01.g
ACCGA050376GA050377
length577444
definitionB6Ng01-240C01.b B6Ng01-240C01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
caagcccatggtcagctcaaggactttctaggactttggaacactggcga
aggcttagctatgtcagaattcaacaagaactgagaggaaaaaaaaaaaa
aaaaaaaaaaaaaaaccccaggaagctatataaggaagctcaaaggttaa
gagcactgctcttccagaggtcctgagttcaattcccagcaaccacatgg
tggctcgaaaccatctgtaatgggatctgatgccctcttctggggtgtct
gaaggcaaagacagtgcactcacataaataaaataaatcttaaaaaaaaa
aaaaaagcagtcttaaattaaaacccaaaagctgttgaagtttgggccat
tgctaggtattgtaatgctaaattctgtaccggaagctatgaatgtatga
gtgaattctcactctcaggtttgcaagcttttgttgtgcaaaccttgttc
cttgatttataactattggttaaataaaattggctaaagccaatttcagg
agggattagaggtaggtgtgcttcgagttacttggctgaggaatggggaa
ggaactggagaaggaggaagaagaacg
actgctgggggagcagagggtacggctgagagtcttcacctctccacaca
ccagcaggcaggaagtggggtcaggtcacaaacctcgaggtccgccccaa
aagcaacccacttcctccagagaagcttcgtctcctgaaggctccgtatc
tccccccacaggaccaccagctgggaacgggtgttcagatgcccgggcct
gggggcacagtcacatccaaagcatacataacgcactccttaatcaagtc
attgtctgcactctgagaagcactgtcgagcaaatgtcttgtcacttaat
cttgtcacttggacagagtggttgcagcataaattcatatggagaagaca
tctgatagagtttaagtcctgcacaaagcaaattaaggatttctgggaac
tgagtaggcaataaggtagaagggaacagggggagggggtggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_144851785_144852234
seq2: B6Ng01-240C01.g_67_516

seq1  GAATTCACTGCTGGGGGAGCAGAGGGTACGGCTGAGAGTCTTCACCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCTGGGGGAGCAGAGGGTACGGCTGAGAGTCTTCACCTCTC  50

seq1  CACACACCAGCAGGCAGGAAGTGGGGTCAGGTCACAAACCTCGAGGTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCAGCAGGCAGGAAGTGGGGTCAGGTCACAAACCTCGAGGTCCG  100

seq1  CCCCAAAAGCAACCCACTTCCTCCAGAGAAGCTTCGTCTCCTGAAGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAAGCAACCCACTTCCTCCAGAGAAGCTTCGTCTCCTGAAGGCTC  150

seq1  CGTATCTCCCCCCACAGGACCACCAGCTGGGAACGGGTGTTCAGATGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCTCCCCCCACAGGACCACCAGCTGGGAACGGGTGTTCAGATGCCC  200

seq1  GGGCCTGGGGGCACAGTCACATCCAAAGCATACATAACGCACTCCTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGGGGGCACAGTCACATCCAAAGCATACATAACGCACTCCTTAAT  250

seq1  CAAGTCATTGTCTGCACTCTGAGAAGCACTGTCGAGCAAATGTCTTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCATTGTCTGCACTCTGAGAAGCACTGTCGAGCAAATGTCTTGTCA  300

seq1  CTTAATCTTGTCACTTGGACAGAGTGGTTGCAGCATAAATTCATATGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCTTGTCACTTGGACAGAGTGGTTGCAGCATAAATTCATATGGAG  350

seq1  AAGACATCTGATAGAGTTTAAGTCCTGCACAAAGCAAATTAAGGATTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCTGATAGAGTTTAAGTCCTGCACAAAGCAAATTAAGGATTTCT  400

seq1  GGGAACTGAGTAGGCAATAAGGTAGAAGGGAACAGGGGGAGGGGGTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTGAGTAGGCAATAAGGTAGAAGGGAACAGGGGGAGGGGGTGGAA  450