BAC Information

Click to search

BAC

Clone NameB6Ng01-240L02
Chromosome6 (Build37)
Map Location 60,347,147 - 60,563,291
singlet/doubletdoublet
Overlap geneA530053G22Rik, LOC667066, LOC100041726
Upstream geneGprin3, EG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717
Downstream geneSnca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, C130092O11Rik, LOC100042694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240L02.bB6Ng01-240L02.g
ACCGA050794GA050795
length1,1131,103
definitionB6Ng01-240L02.b B6Ng01-240L02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,562,255 - 60,563,291)(60,347,147 - 60,348,235)
sequence
ctaaaaaattacaaaaacgtttttttagggtaccaatacgaaccattaga
aatgagaagtcacattactctgatatttaattttaataagattcattatt
gctttcctatatcttatgaatcttacaggacaaaacattatattctagca
ctaatgtgtggctgttgacacctatatttgttcaggtgaaatatcttggc
acagtgagagcatagaggccactctacagtgttctaagggcctgctgtct
tagttagggtctccattgctgtgaagagacaccatgaccaaatgaactct
tatagaagataacatttaactggggctatcttacaggttcaaaagtttac
tcctttatcatcaagtcaggagcatggcaccatcctgggaggcatggaat
aggaagagcagataattctgcatctaatctcaaaggcaaaaatgagaaga
ctggcttcaaggcaggaaggaaggtttctcaaagctcacccccacaatga
cacacaccacttccttcaacaagtacatacctgttaatagtgccactccc
tgggccatcataggtcaaaccaccacaccagccatgtgccctaccagatg
tgattacaaacagaggctaccctcccttataaaatatataattattgaaa
aatataggttacaaaaaggagacagttttgacagaatgacatcaagagct
gttgcctataaaaggtagaaccatataagctattaatttttattgacttt
tttaatttttaaaaaaaaaatttataaggtattttcctcatttaaatttc
caatgctatcccaaaagtccccattccaacctccccccattcccctaccc
atccactccccctttttggcccttgcattcccctgtactggggggatgta
aagtttgcaagtccatgggcctctcttcccagtggatggccaactaggcc
atctttggatacataatgcagatagaagaaaagaactcaggttactgggt
aggtcatattggttgttcaccggatagggtgcagtccgttagcttcatgg
gtactttcctaggctcctcaatgggagccttgatcattcatagctgactg
tggagcattcact
gaattccacagcatgatgtgcattgggtactttattgaaaactcttttac
aaagttgaaatcaatgcaattaatcttacataaagccagtaatgatattc
cttaacaatagggtgtgcagaaatccctgaataacaattgtgaatacctt
tgtttacaggcttgaatcaacatcaaaatttaattccaaggaatcaagta
tagtgactaatacaatttttctcctcctgagatcaaggctcctatttagg
gcatacatctgtgaggtaagaaaaagatggagacatttgaaattaatatt
ggatttcattcatgttttcatgtaagagtttgataatgttgagatgaaaa
tcaaaaatctttgtcattaactctaatttcatgtcattttacaggaatca
acttacctgtttcatatacattttcaatatttttagtaggaattttgacg
aacttagttagggtcacatattcttctcacatttcttgagtgatatttgt
cccagttgctgcattacatgtgaaaaagtaagaagagagagccactataa
tcataccaaagtgtctatgttcatcaagtcttgttactagttggtaaatc
atgctaatttaccaaacgtccctacaagaatggggatgccattcagggaa
acattctgaagtcaggtcagatatttttactgtggataagataatttctc
tccatcctgtatatctgagataccgatttacaatggggaatattaaaatt
agcattgaattattattaaacttatcatcatgtacaattcacctttgaat
tttacatgatataatttatacttgaagtatgttagtaaacacattcctgc
ttccttgtgaatcatgaaactaaagtcagggggcacagttatattgtaaa
tcacagaaaagaaaaaaattgttttctcccataaaataataacatactca
taaaacaagatacattgaaatttaattgaaaagtagtgttggaaatgcct
tgaaacacatgggcacaaggaaaaaattttccttgaacagaaaaccaatg
ggctttatgctttatggatcacaatcaacaaaatgggacatcataaaatg
caa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_60562255_60563291
seq2: B6Ng01-240L02.b_80_1113 (reverse)

seq1  AGTGGATGCT-CACAGTCAGCTATTGGATGGATCAAAGGGCCCCCAATGG  49
      |||| ||||| |||||||||||||  ||  ||||||  ||| ||| || |
seq2  AGTGAATGCTCCACAGTCAGCTAT--GAATGATCAA--GGCTCCC-ATTG  45

seq1  AGGAG-CTAGAGAAAGTACCCAAGGAGCTAAAGGGAACTGCAACCCTATC  98
      ||||| |||| ||||||||||| | |||||| ||  ||||| ||||||||
seq2  AGGAGCCTAG-GAAAGTACCCATGAAGCTAACGG--ACTGC-ACCCTATC  91

seq1  GGTTGAACAA-CAATATGAACTACCCAGTACCCTGGAGTTCTTTTC-TCT  146
       | ||||||| |||||||| |||||||||| ||| ||||||||||| |||
seq2  CGGTGAACAACCAATATGACCTACCCAGTAACCT-GAGTTCTTTTCTTCT  140

seq1  ATCTGCA-TATGTATCAAAAGATGGCCTAGTTGGCCAT-CACTGGGAAGA  194
      ||||||| |||||||| ||||||||||||||||||||| |||||||||||
seq2  ATCTGCATTATGTATCCAAAGATGGCCTAGTTGGCCATCCACTGGGAAGA  190

seq1  GAGGCCCATTGGACTTGCAAACTTTACAT-CCCCCAGTACAGGGGAATGC  243
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  GAGGCCCA-TGGACTTGCAAACTTTACATCCCCCCAGTACAGGGGAATGC  239

seq1  AAGGGCCAAAAAGGGGGAGTGGATGGGTAGGGGAATGGGGGGAGGTTGGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCAAAAAGGGGGAGTGGATGGGTAGGGGAATGGGGGGAGGTTGGA  289

seq1  ATGGGGACTTTTGGGATAGCATTGGAAATTTAAATGAGGAAAATACCTTA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGACTTTTGGGATAGCATTGGAAATTTAAATGAGGAAAATACCTTA  339

seq1  TAAA-TTTTTTTTTAAAAATTAAAAAAGTCAATAAAAATTAATAGCTTAT  392
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTTTTTTTAAAAATTAAAAAAGTCAATAAAAATTAATAGCTTAT  389

seq1  ATGGTTCTACCTTTTATAGGCAACAGCTCTTGATGTCATTCTGTCAAAAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCTACCTTTTATAGGCAACAGCTCTTGATGTCATTCTGTCAAAAC  439

seq1  TGTCTCCTTTTTGTAACCTATATTTTTCAATAATTATATATTTTATAAGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTTTTTGTAACCTATATTTTTCAATAATTATATATTTTATAAGG  489

seq1  GAGGGTAGCCTCTGTTTGTAATCACATCTGGTAGGGCACATGGCTGGTGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTAGCCTCTGTTTGTAATCACATCTGGTAGGGCACATGGCTGGTGT  539

seq1  GGTGGTTTGACCTATGATGGCCCAGGGAGTGGCACTATTAACAGGTATGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTTGACCTATGATGGCCCAGGGAGTGGCACTATTAACAGGTATGT  589

seq1  ACTTGTTGAAGGAAGTGGTGTGTGTCATTGTGGGGGTGAGCTTTGAGAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTGAAGGAAGTGGTGTGTGTCATTGTGGGGGTGAGCTTTGAGAAA  639

seq1  CCTTCCTTCCTGCCTTGAAGCCAGTCTTCTCATTTTTGCCTTTGAGATTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTGCCTTGAAGCCAGTCTTCTCATTTTTGCCTTTGAGATTA  689

seq1  GATGCAGAATTATCTGCTCTTCCTATTCCATGCCTCCCAGGATGGTGCCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAATTATCTGCTCTTCCTATTCCATGCCTCCCAGGATGGTGCCA  739

seq1  TGCTCCTGACTTGATGATAAAGGAGTAAACTTTTGAACCTGTAAGATAGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGACTTGATGATAAAGGAGTAAACTTTTGAACCTGTAAGATAGC  789

seq1  CCCAGTTAAATGTTATCTTCTATAAGAGTTCATTTGGTCATGGTGTCTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTAAATGTTATCTTCTATAAGAGTTCATTTGGTCATGGTGTCTCT  839

seq1  TCACAGCAATGGAGACCCTAACTAAGACAGCAGGCCCTTAGAACACTGTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCAATGGAGACCCTAACTAAGACAGCAGGCCCTTAGAACACTGTA  889

seq1  GAGTGGCCTCTATGCTCTCACTGTGCCAAGATATTTCACCTGAACAAATA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCCTCTATGCTCTCACTGTGCCAAGATATTTCACCTGAACAAATA  939

seq1  TAGGTGTCAACAGCCACACATTAGTGCTAGAATATAATGTTTTGTCCTGT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTCAACAGCCACACATTAGTGCTAGAATATAATGTTTTGTCCTGT  989

seq1  AAGATTCATAAGATATAGGAAAGCAATAATGAATCTTATTAAAAT  1037
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCATAAGATATAGGAAAGCAATAATGAATCTTATTAAAAT  1034

seq1: chr6_60347147_60348235
seq2: B6Ng01-240L02.g_65_1167

seq1  GAATTCCACAGCATGATGTGCATTGGGTACTTTATTGAAAACTCTTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGCATGATGTGCATTGGGTACTTTATTGAAAACTCTTTTAC  50

seq1  AAAGTTGAAATCAATGCAATTAATCTTACATAAAGCCAGTAATGATATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGAAATCAATGCAATTAATCTTACATAAAGCCAGTAATGATATTC  100

seq1  CTTAACAATAGGGTGTGCAGAAATCCCTGAATAACAATTGTGAATACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAATAGGGTGTGCAGAAATCCCTGAATAACAATTGTGAATACCTT  150

seq1  TGTTTACAGGCTTGAATCAACATCAAAATTTAATTCCAAGGAATCAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACAGGCTTGAATCAACATCAAAATTTAATTCCAAGGAATCAAGTA  200

seq1  TAGTGACTAATACAATTTTTCTCCTCCTGAGATCAAGGCTCCTATTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACTAATACAATTTTTCTCCTCCTGAGATCAAGGCTCCTATTTAGG  250

seq1  GCATACATCTGTGAGGTAAGAAAAAGATGGAGACATTTGAAATTAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATCTGTGAGGTAAGAAAAAGATGGAGACATTTGAAATTAATATT  300

seq1  GGATTTCATTCATGTTTTCATGTAAGAGTTTGATAATGTTGAGATGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCATTCATGTTTTCATGTAAGAGTTTGATAATGTTGAGATGAAAA  350

seq1  TCAAAAATCTTTGTCATTAACTCTAATTTCATGTCATTTTACAGGAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATCTTTGTCATTAACTCTAATTTCATGTCATTTTACAGGAATCA  400

seq1  ACTTACCTGTTTCATATACATTTTCAATATTTTTAGTAGGAATTTTGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCTGTTTCATATACATTTTCAATATTTTTAGTAGGAATTTTGACG  450

seq1  AACTTAGTTAGGGTCACATATTCTTCTCACATTTCTTGAGTGATATTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGTTAGGGTCACATATTCTTCTCACATTTCTTGAGTGATATTTGT  500

seq1  CCCAGTTGCTGCATTACATGTGAAAAAGTAAGAAGAGAGAGCCACTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGCTGCATTACATGTGAAAAAGTAAGAAGAGAGAGCCACTATAA  550

seq1  TCATACCAAAGTGTCTATGTTCATCAAGTCTTGTTACTAGTTGGTAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCAAAGTGTCTATGTTCATCAAGTCTTGTTACTAGTTGGTAAATC  600

seq1  ATGCTAATTTACCAAACGTCCCTACAAGAATGGGGATGCCATTCAGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATTTACCAAACGTCCCTACAAGAATGGGGATGCCATTCAGGGAA  650

seq1  ACATTCTGAAGTCAGGTCAGATATTTTTACTGTGGATAAGATAATTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGAAGTCAGGTCAGATATTTTTACTGTGGATAAGATAATTTCTC  700

seq1  TCCATCCTGTATATCTGAGATACCGATTTACAATGGGGAATATTAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTGTATATCTGAGATACCGATTTACAATGGGGAATATTAAAATT  750

seq1  AGCATTGAATTATTATTAAACTTATCATCATGTACAATTCACC-TTGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCATTGAATTATTATTAAACTTATCATCATGTACAATTCACCTTTGAAT  800

seq1  TTTACATGATATAA-TTATACTTGAAGTATGTTAGTAAACACATTCCTGC  848
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTACATGATATAATTTATACTTGAAGTATGTTAGTAAACACATTCCTGC  850

seq1  T--CCTGTGAATCATGAAACTAAAGTCAGGGGGCACAGTTATATTGTAAA  896
      |  | |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTGAATCATGAAACTAAAGTCAGGGGGCACAGTTATATTGTAAA  900

seq1  TCACAGAAAAGAAAAAAATTGTTTTCTCCCATAAAATAATAACATACTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAAAAGAAAAAAATTGTTTTCTCCCATAAAATAATAACATACTCA  950

seq1  TAAAACCAGATACATTGAAA-TTAATAG-AAAGTAGTG-TGGAAATGCCT  993
      |||||| ||||||||||||| ||||| | ||||||||| |||||||||||
seq2  TAAAACAAGATACATTGAAATTTAATTGAAAAGTAGTGTTGGAAATGCCT  1000

seq1  TG-AACACATGGGCACA--GGAGAAATTTTCC-TGAACAG-AAACCAATG  1038
      || ||||||||||||||  | | ||||||||| ||||||| |||||||||
seq2  TGAAACACATGGGCACAAGGAAAAAATTTTCCTTGAACAGAAAACCAATG  1050

seq1  G--CTTATGCTTTAT-GATCAACAATCAAC-AAATGGGACATCATAAAAT  1084
      |   ||||||||||| |||| ||||||||| |||||||||||||||||| 
seq2  GGCTTTATGCTTTATGGATC-ACAATCAACAAAATGGGACATCATAAAA-  1098

seq1  TGCAA  1089
      |||||
seq2  TGCAA  1103