BAC Information

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BAC

Clone NameB6Ng01-241D07
Chromosome6 (Build37)
Map Location 8,644,652 - 8,645,833
singlet/doubletsinglet
Overlap geneIca1
Upstream geneEG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1
Downstream geneLOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241D07.bB6Ng01-241D07.g
ACCGA051181GA051182
length1,1811,149
definitionB6Ng01-241D07.b B6Ng01-241D07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtacc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacgctgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttaagtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgatttgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatgcttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagttttgatcacaattgc
tctgtattaaagctttaggtcaggcatggtgattctaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatccttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccgagatattttatattat
ttgtgactattgagaagggtgttgttcctaattctttctcagctgttatt
ctttgtatagagaaaggccattgacgtgtttgagtttatttatatcagct
accttcaccgaaagctgtttattcagtttagagttctctgggtgattttg
gtcaactatataatactattactatcatctggcatagtgaattttgaact
tctctttccaaacgttgtagctactccgctg

gaattcccactgttctcactccatgtttagataaggaaattatcagtgtc
ccgaatgtacccatttttgaaagctgggagaaaggtatccagggacacaa
agaattcttccatcccctctggaagtctgaaatcatgtttggtgacctca
tggggtgaatttgaaaatattccttttaatatctgaattcagaaaataag
catttgatacacaaagtataaaagcggttgatattaaaattgttagacga
tagtatattaatatagaattgggcagtattataaaataaaacattgtatt
cataatgtaagcatcgtaatataattttactggtgtgttgacataattct
ttgcaagtctggtgaatcttggtccacatctttcaggcccagtgctaaga
gtggatagtatcgctcttactatgcatccatgtaatgatcttgcagtaag
ttagggttgagggcagatggcagctataatcctgaatgcatagtggagtt
gcacaatggttccttacatctgcgggctgttctgtgactatggaataaac
aacactgacggccatttagtcatcggcatactggagtcatgtcccagagg
attcccagagcagtaaaaatttagaagctaaatgtttaactttccagaat
gtttaactttcctgcactagacaaagcaagactcgcagaagcaaacttcc
ttgttcactaaacactcagcccagaaattgagagatcacacatgcaactg
tgaactttgcaccgctggatgtataaacttcatgagccaaaaataggctc
tgcttctgatccaagagcctccatttctaacgacaaacgtatggtggtta
aagccatttgaattttagggtttgtgcctttgtccctttgcctgtggctg
agccgggttaagtctgtttgaaccagggagaagaaacacattgcctgctt
cttgaagttttcagagacatccaagaaagtactaaataaccagtctcgtt
aggtttcagatctcaaggggcacagaacatcagtgtaggtgacatatttc
ataattcagaatgctacctgggtggctattgtattcgatctatgtacttc
aggttcgtgttctctcctggttcgcttaacacatggtgagtctatggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8644652_8645833
seq2: B6Ng01-241D07.g_63_1211 (reverse)

seq1  TTCCATAGACTCACAAATGCTGTAAAAGCGAACACAGGAGAAGAAATGTC  50
      ||||||||||||||  ||| |||  |||||||| |||||||         
seq2  TTCCATAGACTCAC-CATG-TGT-TAAGCGAAC-CAGGAGA--------G  38

seq1  AACA-GAACTGGAAAAGTTACCATAGGGAACCGATTACAATAAGGCAACA  99
      |||| ||||  |  ||||   |||||   | ||| |||||||  || || 
seq2  AACACGAACCTG--AAGT--ACATAG---ATCGAATACAATA--GCCACC  79

seq1  CAGTTAGCCTTTCTGGATTTAATGAAATATGGTCAACTACACTGGAATGT  149
      ||| ||| | ||||| |||  ||||||||| |||| ||||||||  ||||
seq2  CAGGTAG-CATTCTGAATT--ATGAAATAT-GTCACCTACACTG--ATGT  123

seq1  TCTGGTGCCCCCTGGAGGATTCTGAAACCTAACGAGACTGGTTATTTAGT  199
      ||| ||| ||||| |||   ||||||||||||||||||||||||||||||
seq2  TCT-GTG-CCCCTTGAG--ATCTGAAACCTAACGAGACTGGTTATTTAGT  169

seq1  ACCTTTCTTTGGATGTCTCTGAAAACCTTCAAGAAGCAGGCAATGTGTTT  249
      | ||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  A-CTTTC-TTGGATGTCTCTGAAAA-CTTCAAGAAGCAGGCAATGTGTTT  216

seq1  CTTCTCCCTGGTTCAAACAGACTTAACCCGGCTCAGCCACAGGCAAAGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCTGGTTCAAACAGACTTAACCCGGCTCAGCCACAGGCAAAGGG  266

seq1  ACAAAGGCACAAACCCTAAAATTCAAATGGCTTTAACCACCATACGTTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGCACAAACCCTAAAATTCAAATGGCTTTAACCACCATACGTTTG  316

seq1  TCGTTAGAAATGGAGGCTCTTGGATCAGAAGCAGAGCCTATTTTTGGCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTAGAAATGGAGGCTCTTGGATCAGAAGCAGAGCCTATTTTTGGCTC  366

seq1  ATGAAGTTTATACATCCAGCGGTGCAAAGTTCACAGTTGCATGTGTGATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTTATACATCCAGCGGTGCAAAGTTCACAGTTGCATGTGTGATC  416

seq1  TCTCAATTTCTGGGCTGAGTGTTTAGTGAACAAGGAAGTTTGCTTCTGCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATTTCTGGGCTGAGTGTTTAGTGAACAAGGAAGTTTGCTTCTGCG  466

seq1  AGTCTTGCTTTGTCTAGTGCAGGAAAGTTAAACATTCTGGAAAGTTAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGCTTTGTCTAGTGCAGGAAAGTTAAACATTCTGGAAAGTTAAAC  516

seq1  ATTTAGCTTCTAAATTTTTACTGCTCTGGGAATCCTCTGGGACATGACTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCTTCTAAATTTTTACTGCTCTGGGAATCCTCTGGGACATGACTC  566

seq1  CAGTATGCCGATGACTAAATGGCCGTCAGTGTTGTTTATTCCATAGTCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGCCGATGACTAAATGGCCGTCAGTGTTGTTTATTCCATAGTCAC  616

seq1  AGAACAGCCCGCAGATGTAAGGAACCATTGTGCAACTCCACTATGCATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCCCGCAGATGTAAGGAACCATTGTGCAACTCCACTATGCATTC  666

seq1  AGGATTATAGCTGCCATCTGCCCTCAACCCTAACTTACTGCAAGATCATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATAGCTGCCATCTGCCCTCAACCCTAACTTACTGCAAGATCATT  716

seq1  ACATGGATGCATAGTAAGAGCGATACTATCCACTCTTAGCACTGGGCCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATGCATAGTAAGAGCGATACTATCCACTCTTAGCACTGGGCCTG  766

seq1  AAAGATGTGGACCAAGATTCACCAGACTTGCAAAGAATTATGTCAACACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTGGACCAAGATTCACCAGACTTGCAAAGAATTATGTCAACACA  816

seq1  CCAGTAAAATTATATTACGATGCTTACATTATGAATACAATGTTTTATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAAATTATATTACGATGCTTACATTATGAATACAATGTTTTATTT  866

seq1  TATAATACTGCCCAATTCTATATTAATATACTATCGTCTAACAATTTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATACTGCCCAATTCTATATTAATATACTATCGTCTAACAATTTTAA  916

seq1  TATCAACCGCTTTTATACTTTGTGTATCAAATGCTTATTTTCTGAATTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACCGCTTTTATACTTTGTGTATCAAATGCTTATTTTCTGAATTCA  966

seq1  GATATTAAAAGGAATATTTTCAAATTCACCCCATGAGGTCACCAAACATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAAAAGGAATATTTTCAAATTCACCCCATGAGGTCACCAAACATG  1016

seq1  ATTTCAGACTTCCAGAGGGGATGGAAGAATTCTTTGTGTCCCTGGATACC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGACTTCCAGAGGGGATGGAAGAATTCTTTGTGTCCCTGGATACC  1066

seq1  TTTCTCCCAGCTTTCAAAAATGGGTACATTCGGGACACTGATAATTTCCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCAGCTTTCAAAAATGGGTACATTCGGGACACTGATAATTTCCT  1116

seq1  TATCTAAACATGGAGTGAGAACAGTGGGAATTC  1182
      |||||||||||||||||||||||||||||||||
seq2  TATCTAAACATGGAGTGAGAACAGTGGGAATTC  1149


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