BAC Information

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BAC

Clone NameB6Ng01-241F01
Chromosome6 (Build37)
Map Location 18,143,934 - 18,273,620
singlet/doubletdoublet
Overlap geneCftr
Upstream geneCav2, Cav1, Met, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751
Downstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241F01.bB6Ng01-241F01.g
ACCGA051263GA051264
length9651,089
definitionB6Ng01-241F01.b B6Ng01-241F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,143,934 - 18,145,001)(18,272,530 - 18,273,620)
sequence
gaattcatctttaaactgtgttctaaggaccaccatccttcctgtcccat
cccatcagccgtctgagatttccaatctcggccagtcgtcaacacacgtg
aatctttctagctgaattgaactgtgaactagctgctaagcacagccgtt
tttaaatttcagattgtagaacctaaattatgatatggtaaacaaaggtt
aaagaggttgtcactttgcatttattttgtaccttgctgttatggtatta
agggcatttgtgcttgctgtctctgaggaggtaggcatactactatttta
tgcaggttagtcctcttcccagttctcatctgtagtagctagaagctgat
catggaaagagtccttataaagcagtgactgctgaaggtcatgagtcagg
tttgcttttgttttctggaaaggggtttattatttgtttacagatcacac
ccccaccctcagcctagtagttttcagttcccttactttaatctaagttt
gtgtcttattttaatacaactcactctacctacttttgtaaagctgaaca
tggttaaatgaattcagaagaatgtgaagaaatctttgatgttagtaatt
cagaaaagttttgtgcctctgagtaccatttcctaaccctggtaataaag
caacagcccttttgtcctgtttgcctaacaggaacttaagatgcaaataa
agtgctaatggtgtggaatttctttggcaattgctaaatagatactttaa
aaaaattgtagtaaactcttgctttaagtttatggagaataatagcccaa
atcacaacatcccacaaggccatcttccttttacctcctatacttattgc
cagatacttttcagtgtcactttccttctgtgagatgctgggcaataagt
acctagctgtagaactaactttctttcttctttctttcttcttctttctt
tctttctttcttctt
gaattcacacagggtagaaacttggatgcagaagccagggaggaatgttg
tgtgctggcttgcttcccctggcttgctcagcttgctttcttatagaatc
caaaactactaatcccagggatggcaccacccaccaggggctaggccctt
ccccctttgaacactaattgagaaaatgctagtgtatgctttacagctgg
atctcatggaggcatttcctcaagagaggctcctttttctgtgataactc
cagcttgtgttaagttgacacagaaaagcagccagtacagcaccccatca
agaatgagctctgttgtacactgtgctgggtaagtttctattcttatgat
aaacattgacaaagagcaaattgggaaggaaagggtttatttcggcttac
attttatagttcatccttgagggactcaaagcaggaactaaaatagagac
tgtggaggagatgctgttggcttgttccccatggcttgctcagcccaatt
tcttgcaccatccaggactaccaatctgggtgttgtagctcacagtgatc
tagatcctcccacatgaatttcaatcaagaaaatgaactccagattcacc
tacagtgaacctgttggaggtattttgttaactgaggttccccttcctag
ataattctatcttgcatcaaattgacaaaaataatctagttgggtttaga
gacccaacttaatgtcttgtgctctaattcaactgggattctcaaagaga
ttatatctaaaaggaatgtttgtgttctaagaatcatagagagtagagct
aggaattccagagctaggaatcccaatgaatatatctgaaaacagatgag
tttcacacaaataaaaggattttattgacacatgatattctattacagta
ataaatataatacattcctctaaagcttagtttgcagttcagaagttgat
gtgccatcagggggccgtcttaacctttggtaccatcttcttcaaagctg
cattaaagagagcatgtgttgttctgagaccacacagatggtacaaggat
taacattcagctcgtctcacaacatgaaagtgaatgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18143934_18145001
seq2: B6Ng01-241F01.b_43_1007

seq1  GAATTCATCTTTAAACTGTGTTCTAAGGACCACCATCCTTCCTGTCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTAAACTGTGTTCTAAGGACCACCATCCTTCCTGTCCCAT  50

seq1  CCCATCAGCCGTCTGAGATTTCCAATCTCGGCCAGTCGTCAACACACGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAGCCGTCTGAGATTTCCAATCTCGGCCAGTCGTCAACACACGTG  100

seq1  AATCTTTCTAGCTGAATTGAACTGTGAACTAGCTGCTAAGCACAGCCGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCTAGCTGAATTGAACTGTGAACTAGCTGCTAAGCACAGCCGTT  150

seq1  TTTAAATTTCAGATTGTAGAACCTAAATTATGATATGGTAAACAAAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTCAGATTGTAGAACCTAAATTATGATATGGTAAACAAAGGTT  200

seq1  AAAGAGGTTGTCACTTTGCATTTATTTTGTACCTTGCTGTTATGGTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGTTGTCACTTTGCATTTATTTTGTACCTTGCTGTTATGGTATTA  250

seq1  AGGGCATTTGTGCTTGCTGTCTCTGAGGAGGTAGGCATACTACTATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATTTGTGCTTGCTGTCTCTGAGGAGGTAGGCATACTACTATTTTA  300

seq1  TGCAGGTTAGTCCTCTTCCCAGTTCTCATCTGTAGTAGCTAGAAGCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTTAGTCCTCTTCCCAGTTCTCATCTGTAGTAGCTAGAAGCTGAT  350

seq1  CATGGAAAGAGTCCTTATAAAGCAGTGACTGCTGAAGGTCATGAGTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAAGAGTCCTTATAAAGCAGTGACTGCTGAAGGTCATGAGTCAGG  400

seq1  TTTGCTTTTGTTTTCTGGAAAGGGGTTTATTATTTGTTTACAGATCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTGTTTTCTGGAAAGGGGTTTATTATTTGTTTACAGATCACAC  450

seq1  CCCCACCCTCAGCCTAGTAGTTTTCAGTTCCCTTACTTTAATCTAAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCTCAGCCTAGTAGTTTTCAGTTCCCTTACTTTAATCTAAGTTT  500

seq1  GTGTCTTATTTTAATACAACTCACTCTACCTACTTTTGTAAAGCTGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTATTTTAATACAACTCACTCTACCTACTTTTGTAAAGCTGAACA  550

seq1  TGGTTAAATGAATTCAGAAGAATGTGAAGAAATCTTTGATGTTAGTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAATGAATTCAGAAGAATGTGAAGAAATCTTTGATGTTAGTAATT  600

seq1  CAGAAAAGTTTTGTGCCTCTGAGTACCATTTCCTAACCCTGGTAATAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGTTTTGTGCCTCTGAGTACCATTTCCTAACCCTGGTAATAAAG  650

seq1  CAACAGCCCTTTTGTCCTGTTTGCCTAACAGGAACTTAAGATGCAAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCCCTTTTGTCCTGTTTGCCTAACAGGAACTTAAGATGCAAATAA  700

seq1  AGTGCTAATGGTGTGGAATTTCTTTGGCAATTGCTAAATAGATACTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAATGGTGTGGAATTTCTTTGGCAATTGCTAAATAGATACTTTAA  750

seq1  AAAAATTGTAGTAAACTCTTGCTTTAAGTTTATGGAGAATAATAGCCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGTAGTAAACTCTTGCTTTAAGTTTATGGAGAATAATAGCCCAA  800

seq1  ATCACAACATCCCACAAGGCCATCTTCCTTTTACCTCCTATACTTATTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAACATCCCACAAGGCCATCTTCCTTTTACCTCCTATACTTATTGC  850

seq1  CAGATACTTTTCAGTGTCACTTTCCTTCTGTGAGATGCTGGGCAATAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACTTTTCAGTGTCACTTTCCTTCTGTGAGATGCTGGGCAATAAGT  900

seq1  ACCTAGCTGTAGAACTAACTTTCTTTCTTTCTTTCTTTCT--TTCTTTCT  948
      ||||||||||||||||||||||||||| ||||||||||||  ||||||||
seq2  ACCTAGCTGTAGAACTAACTTTCTTTC-TTCTTTCTTTCTTCTTCTTTCT  949

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTATTTCTTCCTTCCTTC  998
      ||||||||||| |||||                                 
seq2  TTCTTTCTTTC-TTCTT---------------------------------  965

seq1  CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTCTCTCTCTCTCTCTCT  1048
                                                        
seq2  --------------------------------------------------  965

seq1  CTCTCTCTTTCTTTCTTCTT  1068
                          
seq2  --------------------  965

seq1: chr6_18272530_18273620
seq2: B6Ng01-241F01.g_67_1155 (reverse)

seq1  GATCATTCAACTTCATGTTGTGAAGACGAGCTG-ATGTAAAT-CTTGTAC  48
      |||||||||  ||||||||||| |||||||||| |||| ||| |||||| 
seq2  GATCATTCACTTTCATGTTGTG-AGACGAGCTGAATGTTAATCCTTGTA-  48

seq1  CCATCTGTGTGGTTCTCAG-ACAACACATGCTCTCTTTTAATGCAGCTTT  97
      |||||||||||| |||||| ||||||||||||||| ||||||||||||||
seq2  CCATCTGTGTGG-TCTCAGAACAACACATGCTCTC-TTTAATGCAGCTTT  96

seq1  GAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGGGCACATCAAC  147
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGAT-GGCACATCAAC  145

seq1  TTCTGAACTGCAAACTAAGCTTTAGAGGAATGTATTATATTTATTACTGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACTGCAAACTAAGCTTTAGAGGAATGTATTATATTTATTACTGT  195

seq1  AATAGAATATCATGTGTCAATAAAATCCTTTTATTTGTGTGAAACTCATC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATATCATGTGTCAATAAAATCCTTTTATTTGTGTGAAACTCATC  245

seq1  TGTTTTCAGATATATTCATTGGGATTCCTAGCTCTGGAATTCCTAGCTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGATATATTCATTGGGATTCCTAGCTCTGGAATTCCTAGCTCT  295

seq1  ACTCTCTATGATTCTTAGAACACAAACATTCCTTTTAGATATAATCTCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTATGATTCTTAGAACACAAACATTCCTTTTAGATATAATCTCTT  345

seq1  TGAGAATCCCAGTTGAATTAGAGCACAAGACATTAAGTTGGGTCTCTAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATCCCAGTTGAATTAGAGCACAAGACATTAAGTTGGGTCTCTAAA  395

seq1  CCCAACTAGATTATTTTTGTCAATTTGATGCAAGATAGAATTATCTAGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTAGATTATTTTTGTCAATTTGATGCAAGATAGAATTATCTAGGA  445

seq1  AGGGGAACCTCAGTTAACAAAATACCTCCAACAGGTTCACTGTAGGTGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAACCTCAGTTAACAAAATACCTCCAACAGGTTCACTGTAGGTGAA  495

seq1  TCTGGAGTTCATTTTCTTGATTGAAATTCATGTGGGAGGATCTAGATCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTTCATTTTCTTGATTGAAATTCATGTGGGAGGATCTAGATCAC  545

seq1  TGTGAGCTACAACACCCAGATTGGTAGTCCTGGATGGTGCAAGAAATTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTACAACACCCAGATTGGTAGTCCTGGATGGTGCAAGAAATTGG  595

seq1  GCTGAGCAAGCCATGGGGAACAAGCCAACAGCATCTCCTCCACAGTCTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCAAGCCATGGGGAACAAGCCAACAGCATCTCCTCCACAGTCTCT  645

seq1  ATTTTAGTTCCTGCTTTGAGTCCCTCAAGGATGAACTATAAAATGTAAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTTCCTGCTTTGAGTCCCTCAAGGATGAACTATAAAATGTAAGC  695

seq1  CGAAATAAACCCTTTCCTTCCCAATTTGCTCTTTGTCAATGTTTATCATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATAAACCCTTTCCTTCCCAATTTGCTCTTTGTCAATGTTTATCATA  745

seq1  AGAATAGAAACTTACCCAGCACAGTGTACAACAGAGCTCATTCTTGATGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGAAACTTACCCAGCACAGTGTACAACAGAGCTCATTCTTGATGG  795

seq1  GGTGCTGTACTGGCTGCTTTTCTGTGTCAACTTAACACAAGCTGGAGTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTACTGGCTGCTTTTCTGTGTCAACTTAACACAAGCTGGAGTTA  845

seq1  TCACAGAAAAAGGAGCCTCTCTTGAGGAAATGCCTCCATGAGATCCAGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAAAAAGGAGCCTCTCTTGAGGAAATGCCTCCATGAGATCCAGCT  895

seq1  GTAAAGCATACACTAGCATTTTCTCAATTAGTGTTCAAAGGGGGAAGGGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCATACACTAGCATTTTCTCAATTAGTGTTCAAAGGGGGAAGGGC  945

seq1  CTAGCCCCTGGTGGGTGGTGCCATCCCTGGGATTAGTAGTTTTGGATTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCCTGGTGGGTGGTGCCATCCCTGGGATTAGTAGTTTTGGATTCT  995

seq1  ATAAGAAAGCAAGCTGAGCAAGCCAGGGGAAGCAAGCCAGCACACAACAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAGCAAGCTGAGCAAGCCAGGGGAAGCAAGCCAGCACACAACAT  1045

seq1  TCCTCCCTGGCTTCTGCATCCAAGTTTCTACCCTGTGTGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTGGCTTCTGCATCCAAGTTTCTACCCTGTGTGAATTC  1089