BAC Information

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BAC

Clone NameB6Ng01-241K10
Chromosome6 (Build37)11 (Build37)
Map Location 99,274,772 - 99,274,9954,284,902 - 4,285,954
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGm765, LOC665963, LOC665979, Foxp1
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241K10.bB6Ng01-241K10.g
ACCGA051510GA051511
length8331,064
definitionB6Ng01-241K10.b B6Ng01-241K10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,274,772 - 99,274,995)(4,284,902 - 4,285,954)
sequence
gaattctgtctcaaaaactatggaggagaatgaaggaggaagagacctat
ttgttgacctgtgatcaccacatgtacatgcacatatgtatgtgtacctg
taccacatgtaaacaaagaaaataaccttttttgacatgtaattcacata
tattacctatttggactatataagccagtgatttttgtctttgttcagag
aattgcacaaccatcaccacaattttaaaatgttttcattatctaaaaaa
gaaacagtatttccttcccctctatcttcttcctagccaaccaagtctct
ttataacatgtttcttttacattaactcctttttttgtgtgcctgtacat
gatgcatctgtgtgtgtctatttgtgcacttgtgtgtatgtgtgtgtgtg
tgtatccaggcatatgtctgcattaatatatggaggtcaaaggataacct
tgagggtcagttctagtcttctacctttttttgagatagtcttgttttta
tgcaggctagctggcctgtgggcttgcaggggttctcctatttcagcctc
ctgtttccacctaggagcactgggattatagacatttgtgcggcttatat
attttattgggtcctggggctttgatctcaagtccttatgctttcatggt
acagcattttttttcttctcctgagacagggtttcactgtgtagccctgg
ctgtcctagaacttgggctgtaggtcaggctggcctcgagctctcagaga
tccccctgcttctacttcttgagtactgggattaaaggtgtgctctgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgag

gaattctgcagcccgtctgttgctcagacgtgtgaggcagcaactgcctc
catgatgatgagaggcgagtcaggcagacctgagtttactgtgcccacgc
taccttgcacggttctgctttgaatgcaaacaccctcacagggccctggg
tttgaacagctgccggtcttgttttgggaggttctggagtctggctggca
gagtaagagttatagcctggccctccttttagtctttctttctgcttctt
gatccaccaaatgtgaggagcttcagagtatcccacaccatcacacgtga
cattcccggacacttcaataattgtcttcatcagaagctgggccacagtg
atgggaaatactaactcatctagccactgaagcatcttgctacttagaga
gcttggtactgtcctcacctctagccccaagactaagaggcagagactat
ttcaagtaagttagataacagccaaaagagattggtcggcttactggagc
tacaggtagaagacactgtaagatgattcttttatgggaaaacagatcac
tttttctggggtcagggcaattttcaaacataaaacccagaaacatccct
tccaatgagttcaactgaactaaactacaaatttgagattgaggggtgga
gagcactgttaacagtaattcaatcactatcagttagctgagtaaatgta
aattctgagttgagtaaaaactgctctcattccaggacacctttagtcct
agagcttaggagggagagataggtgaatctctgaatttgagaccagcctg
gctttcacagaaagttccaggccagccaatgaaacacaatgagactatct
gaaaacaaaaccattgacatcactgacaataacaacagaaacaaccccac
cattatcttcagagtgacttattggataaacccaagtaagaatatcagag
acagtactgcagatgaaagtccatttgactacattcattcttagccagtt
cagttaaaacaaacaaacagcaattatcagcctgctgagtatagagtatt
atatttggagttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_99274772_99274995
seq2: B6Ng01-241K10.b_700_876 (reverse)

seq1  CTCACACACACACACACACACACACACACACACACACACACTCAACTAGT  50
      ||||||||||||||||||||||||||||||||||||||            
seq2  CTCACACACACACACACACACACACACACACACACACA------------  38

seq1  AAAAATAAGTCTTAAAAACATTAATAAGAACCAGGCTGGTGTTGCTGGTG  100
                                                     | |
seq2  -----------------------------------------------GAG  41

seq1  CGTGCCTTTGATCCCAACACTTGGAAAGCAAAGGCAGGGGGATCTCTGTG  150
      |   ||||| ||||||  |||    ||| | | ||||||||||||||| |
seq2  CACACCTTTAATCCCAGTACTCAAGAAGTAGAAGCAGGGGGATCTCTGAG  91

seq1  AGTTCAAGACCAGCCT---CTA-----TGAGTTACAGGATAACCAGGGCT  192
      || || || |||||||   |||       ||||  |||| | ||||||||
seq2  AGCTCGAGGCCAGCCTGACCTACAGCCCAAGTTCTAGGACAGCCAGGGCT  141

seq1  ACACAGAGAAACCCTGTGTCAGG----GAAAAAAAA  224
      |||||| |||||||||| |||||    |||||||||
seq2  ACACAGTGAAACCCTGTCTCAGGAGAAGAAAAAAAA  177


seq1: chr11_4284902_4285954
seq2: B6Ng01-241K10.g_65_1128

seq1  GAATTCTGCAGCCCGTCTGTTGCTCAGACGTGTGAGGCAGCAACTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGCCCGTCTGTTGCTCAGACGTGTGAGGCAGCAACTGCCTC  50

seq1  CATGATGATGAGAGGCGAGTCAGGCAGACCTGAGTTTACTGTGCCCACGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGATGAGAGGCGAGTCAGGCAGACCTGAGTTTACTGTGCCCACGC  100

seq1  TACCTTGCACGGTTCTGCTTTGAATGCAAACACCCTCACAGGGCCCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGCACGGTTCTGCTTTGAATGCAAACACCCTCACAGGGCCCTGGG  150

seq1  TTTGAACAGCTGCCGGTCTTGTTTTGGGAGGTTCTGGAGTCTGGCTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACAGCTGCCGGTCTTGTTTTGGGAGGTTCTGGAGTCTGGCTGGCA  200

seq1  GAGTAAGAGTTATAGCCTGGCCCTCCTTTTAGTCTTTCTTTCTGCTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGAGTTATAGCCTGGCCCTCCTTTTAGTCTTTCTTTCTGCTTCTT  250

seq1  GATCCACCAAATGTGAGGAGCTTCAGAGTATCCCACACCATCACACGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACCAAATGTGAGGAGCTTCAGAGTATCCCACACCATCACACGTGA  300

seq1  CATTCCCGGACACTTCAATAATTGTCTTCATCAGAAGCTGGGCCACAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCGGACACTTCAATAATTGTCTTCATCAGAAGCTGGGCCACAGTG  350

seq1  ATGGGAAATACTAACTCATCTAGCCACTGAAGCATCTTGCTACTTAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAATACTAACTCATCTAGCCACTGAAGCATCTTGCTACTTAGAGA  400

seq1  GCTTGGTACTGTCCTCACCTCTAGCCCCAAGACTAAGAGGCAGAGACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTACTGTCCTCACCTCTAGCCCCAAGACTAAGAGGCAGAGACTAT  450

seq1  TTCAAGTAAGTTAGATAACAGCCAAAAGAGATTGGTCGGCTTACTGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTAAGTTAGATAACAGCCAAAAGAGATTGGTCGGCTTACTGGAGC  500

seq1  TACAGGTAGAAGACACTGTAAGATGATTCTTTTATGGGAAAACAGATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTAGAAGACACTGTAAGATGATTCTTTTATGGGAAAACAGATCAC  550

seq1  TTTTTCTGGGGTCAGGGCAATTTTCAAACATAAAACCCAGAAACATCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGGGGTCAGGGCAATTTTCAAACATAAAACCCAGAAACATCCCT  600

seq1  TCCAATGAGTTCAACTGAACTAAACTACAAATTTGAGATTGAGGGGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGAGTTCAACTGAACTAAACTACAAATTTGAGATTGAGGGGTGGA  650

seq1  GAGCACTGTTAACAGTAATTCAATCACTATCAGTTAGCTGAGTAAATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGTTAACAGTAATTCAATCACTATCAGTTAGCTGAGTAAATGTA  700

seq1  AATTCTGAGTTGAGTAAAAACTGCTCTCATTCCAGGACACCTTTAGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGAGTTGAGTAAAAACTGCTCTCATTCCAGGACACCTTTAGTCCT  750

seq1  AGAGCTTAGGAGGGAGAGATAGGTGAATCTCTGAATTTGAGACCAGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTAGGAGGGAGAGATAGGTGAATCTCTGAATTTGAGACCAGCCTG  800

seq1  GCTTTCACAGAAAGTTCCAGGCCAGCCAATGAAACACAATGAGACTATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCACAGAAAGTTCCAGGCCAGCCAATGAAACACAATGAGACTATCT  850

seq1  GAAAACAAAACCATTGACATCACTGACAATAACAACAG-AACAA-CCCAC  898
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  GAAAACAAAACCATTGACATCACTGACAATAACAACAGAAACAACCCCAC  900

seq1  CATTATC-TCAGAGTGACT--ATGGATAAACCCAAGTAAGAATATCAGAG  945
      ||||||| |||||||||||   ||||||||||||||||||||||||||||
seq2  CATTATCTTCAGAGTGACTTATTGGATAAACCCAAGTAAGAATATCAGAG  950

seq1  ACAGTACTGCAGATGAAAAGTCCATTTGACTACAATCAT--CTAGCCAG-  992
      ||||||||||||||| |||||||||||||||||| ||||   ||||||| 
seq2  ACAGTACTGCAGATG-AAAGTCCATTTGACTACATTCATTCTTAGCCAGT  999

seq1  TCAGT--AAACAAACAAACAGCAATAATCAGCCCTGGTGAGTATAGAGTA  1040
      |||||  |||||||||||||||||| ||||| |||| |||||||||||||
seq2  TCAGTTAAAACAAACAAACAGCAATTATCAG-CCTGCTGAGTATAGAGTA  1048

seq1  -TATATT--GAGTTGC  1053
       ||||||  |||||||
seq2  TTATATTTGGAGTTGC  1064


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