BAC Information

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BAC

Clone NameB6Ng01-241M06
Chromosome6 (Build37)
Map Location 30,833,198 - 30,986,808
singlet/doubletdoublet
Overlap geneCopg2, Tsga13, Klf14
Upstream gene4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2
Downstream geneLOC100038973, AB041803, Mkln1, Podxl, EG619959, LOC620104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241M06.bB6Ng01-241M06.g
ACCGA051597GA051598
length1,1111,094
definitionB6Ng01-241M06.b B6Ng01-241M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,833,198 - 30,834,314)(30,985,721 - 30,986,808)
sequence
gaattcagacatgggcatcatcagggggaattatgcagcttaccgcacct
actaatcacttaagaacactagaagtaaaccctaattatatccaataagg
ctcagagggaagtattaaccatttaaacaaataccattatttgtctttaa
cttcgcaagaatttagggaatcaaaaaatgtaactgaatgctttctattt
cttgtttgtggcaggcaccacactaattttcaatcccttctcccttgcct
gcccctagtacttagactataaaagctaaatacttactttctggtctcct
aaggatagccatataatctagatgtgtcaaatgaaatctaaaaattgcct
gaggaaatgcttctgcactcctgatgaaagacacagatggtactggcacc
cctcggccccttttcagtagctctcctgcttgagcatgggacactgccag
taattcaagcagctatttcgcaatgatggagtacatacaaaagaatccaa
gtgctactagtcctgctactgtaaaatggttgcagcaacaccagctaggc
tgtgcctccagacttacagttacacgagggaagtacagtttcatcttggt
taaatcactgtctacatctgcttttctgatatttccaactagaagcttta
atcgaaactgtactaaacataactaaacataaacatcttccttcaaaatg
tagtttgttttatgaaaactatattcattaaatggattatacttaatttc
ttatatgacaactattaaagtgtaaaatgatgcattttattataaattat
acagaatttcatttaaattatattatttcattctaagatacttagaaatt
accaaacatttaaacaaaatattagccataattctaagtagccaaagata
aactactattaatatagtgtatttaccgacatattgttacatacatatac
ataaaatagttctttaaagtcagactatataggatatacagattgaattc
aacttctacctagcattacatgtactaggattttcatattattggattat
ttttcaaaatatccaaggagcttgaaatatttctattgtgactactgcat
cctattaagta
gaattcttgatgatgccaaggaccatgaggcacaatgatgtcacacatca
caatgatgtcacacgtcactggccccataacagcacctctgtttactaca
gaaagtcatgggtacataagggcaaatacacaagatctcactaaaactgg
aaggttgttagcacaacacaggacacaggtcaaatgggaataaatgagat
tacagaaaatctaatcatgatcatcaatggactgaagacacagcaaggca
gacatatgcacacatacaccctcatggcccaccccgccccaatagcatag
ccctacctcaaaagcatgctgggtaattagttctcttacacctcagagcc
tcctgaagaccactgagatgtcgtcatgggctgaatgtgaaaccctctaa
atctacgtgtggaagcctggtcctccaatctgatgatatttggagataaa
acttctagtagacacttgtgtttaggtgaggccacgactgtggaaaggac
tgtcgttgtaggattagtggctatcttagggttttactgctgtgaagaga
catcatgaccaaggcaagttttataaggacaacatttaattggggctggc
ttacaggttcagaggttcagtccattatcatcaaggcaggaacatggcag
catccaggcaggcatggtgcaggaggagctgagagttctacatctccatc
tgaagactgctagcagaatactgactttccaagcagctaggatgagtgtc
ttaaatcccatgcccacagtgacacgcctactccaacaggccacaccttc
taatcctgccattcccctgggccgtgcatatataaaccaacacagtggcc
cttataagaatagacaacaaaaggatttttttgtctccctcctgtcccac
cttgatcccttcccttctctaatgtgtaaggatcttagcagtcaaaatat
ccaagacccaggttgcagcccagtggtagatccctgcttcacgtgctcaa
ggccctggggtcagtcccagcaactgaacagaacaaaacgtcagcagtgg
tgtgatctggagaacagaagaaggaaatgtgagaagaaacctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_30833198_30834314
seq2: B6Ng01-241M06.b_45_1155

seq1  GAATTCAGACATGGGCATCATCAGGGGGAATTATGCAGCTTACCGCACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACATGGGCATCATCAGGGGGAATTATGCAGCTTACCGCACCT  50

seq1  ACTAATCACTTAAGAACACTAGAAGTAAACCCTAATTATATCCAATAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCACTTAAGAACACTAGAAGTAAACCCTAATTATATCCAATAAGG  100

seq1  CTCAGAGGGAAGTATTAACCATTTAAACAAATACCATTATTTGTCTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGGAAGTATTAACCATTTAAACAAATACCATTATTTGTCTTTAA  150

seq1  CTTCGCAAGAATTTAGGGAATCAAAAAATGTAACTGAATGCTTTCTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGCAAGAATTTAGGGAATCAAAAAATGTAACTGAATGCTTTCTATTT  200

seq1  CTTGTTTGTGGCAGGCACCACACTAATTTTCAATCCCTTCTCCCTTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTGTGGCAGGCACCACACTAATTTTCAATCCCTTCTCCCTTGCCT  250

seq1  GCCCCTAGTACTTAGACTATAAAAGCTAAATACTTACTTTCTGGTCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTAGTACTTAGACTATAAAAGCTAAATACTTACTTTCTGGTCTCCT  300

seq1  AAGGATAGCCATATAATCTAGATGTGTCAAATGAAATCTAAAAATTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAGCCATATAATCTAGATGTGTCAAATGAAATCTAAAAATTGCCT  350

seq1  GAGGAAATGCTTCTGCACTCCTGATGAAAGACACAGATGGTACTGGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATGCTTCTGCACTCCTGATGAAAGACACAGATGGTACTGGCACC  400

seq1  CCTCGGCCCCTTTTCAGTAGCTCTCCTGCTTGAGCATGGGACACTGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGCCCCTTTTCAGTAGCTCTCCTGCTTGAGCATGGGACACTGCCAG  450

seq1  TAATTCAAGCAGCTATTTCGCAATGATGGAGTACATACAAAAGAATCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAAGCAGCTATTTCGCAATGATGGAGTACATACAAAAGAATCCAA  500

seq1  GTGCTACTAGTCCTGCTACTGTAAAATGGTTGCAGCAACACCAGCTAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTACTAGTCCTGCTACTGTAAAATGGTTGCAGCAACACCAGCTAGGC  550

seq1  TGTGCCTCCAGACTTACAGTTACACGAGGGAAGTACAGTTTCATCTTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTCCAGACTTACAGTTACACGAGGGAAGTACAGTTTCATCTTGGT  600

seq1  TAAATCACTGTCTACATCTGCTTTTCTGATATTTCCAACTAGAAGCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCACTGTCTACATCTGCTTTTCTGATATTTCCAACTAGAAGCTTTA  650

seq1  ATCGAAACTGTACTAAACATAACTAAACATAAACATCTTCCTTCAAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAAACTGTACTAAACATAACTAAACATAAACATCTTCCTTCAAAATG  700

seq1  TAGTTTGTTTTATGAAAACTATATTCATTAAATGGATTATACTTAATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGTTTTATGAAAACTATATTCATTAAATGGATTATACTTAATTTC  750

seq1  TTATATGACAACTATTAAAGTGTAAAATGATGCATTTTATTATAAATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGACAACTATTAAAGTGTAAAATGATGCATTTTATTATAAATTAT  800

seq1  ACAGAATTTCATTTAAATTATATTATTTCATTCTAAGATACTTAGAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTTCATTTAAATTATATTATTTCATTCTAAGATACTTAGAAATT  850

seq1  ACCAAACATTTAAACAAAATATTAGCCATAATTCTAAGTAGCCAAAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACATTTAAACAAAATATTAGCCATAATTCTAAGTAGCCAAAGATA  900

seq1  AACTACTATTAATATAGTGTATTTACCGACATATTGTTACATACATATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTATTAATATAGTGTATTTACCGACATATTGTTACATACATATAC  950

seq1  ATAAAATAGTTCTTTAAAGTCAGACTATATAGGATATACAGATTGAATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAGTTCTTTAAAGTCAGACTATATAGGATATACAGATTGAATTC  1000

seq1  AACTTCTACCTAGCATTACATGTACTAAGGAATTTTTCATATTATT-GAA  1049
      |||||||||||||||||||||||||| ||||  ||||||||||||| || 
seq2  AACTTCTACCTAGCATTACATGTACT-AGGA--TTTTCATATTATTGGAT  1047

seq1  TATTTTTCAAAAATAATCCCAAGAGCTTGAAATATTTCCTATGTGACTAC  1099
      ||||||||||||   |||| | ||||||||||||||||   |||||||||
seq2  TATTTTTCAAAA--TATCCAAGGAGCTTGAAATATTTCTATTGTGACTAC  1095

seq1  TGCATTCCTAATTAAGTA  1117
      |||| |||| ||||||||
seq2  TGCA-TCCT-ATTAAGTA  1111

seq1: chr6_30985721_30986808
seq2: B6Ng01-241M06.g_67_1160 (reverse)

seq1  TGAGG-TTCTTCTCACATTTTCCTTC-TCTGTTCTTCAGACCACA-CACT  47
      ||||| ||||||||||| |||||||| |||||||| |||| |||| ||||
seq2  TGAGGTTTCTTCTCACA-TTTCCTTCTTCTGTTCTCCAGATCACACCACT  49

seq1  GCTGACGTTT--GTCTGTTCAG-TGCTGGGGACTGAACCCAGGGCCTTGA  94
      ||||||||||   ||||||||| |||| |||||||| |||||||||||||
seq2  GCTGACGTTTTGTTCTGTTCAGTTGCT-GGGACTGACCCCAGGGCCTTGA  98

seq1  GCACGTGAAGCCAGGGATCTACCACTGGGCTGCAACCTGGGTCTTGGATA  144
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCACGTGAAG-CAGGGATCTACCACTGGGCTGCAACCTGGGTCTTGGATA  147

seq1  TTTTGACTGCTAAGATCC-TACACATTAGAGAAGGGAAGGGATCAAGGTG  193
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTGACTGCTAAGATCCTTACACATTAGAGAAGGGAAGGGATCAAGGTG  197

seq1  GGACAGGAGGGAGACAAAAAAATCC-TTTGTTGTCTATTCTTATAA-GGC  241
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  GGACAGGAGGGAGACAAAAAAATCCTTTTGTTGTCTATTCTTATAAGGGC  247

seq1  CACTGTGTTGGTTTATATATGCACGGCCCAGGGGAATGGCAGGATTAGAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTTGGTTTATATATGCACGGCCCAGGGGAATGGCAGGATTAGAA  297

seq1  GGTGTGGCCCTGTTGGAGTAGGCGTGTCACTGTGGGCATGGGATTTAAGA  341
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGG-CCTGTTGGAGTAGGCGTGTCACTGTGGGCATGGGATTTAAGA  346

seq1  CACTCATCCTAGCTGCTTGG-AAGTCAGTATTCTGCTAGCAGTCTTCAGA  390
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CACTCATCCTAGCTGCTTGGAAAGTCAGTATTCTGCTAGCAGTCTTCAGA  396

seq1  TGGAGATGTAGAACTCTCAGCTCCTCCTGCACCATGCCTGCCTGGATGCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATGTAGAACTCTCAGCTCCTCCTGCACCATGCCTGCCTGGATGCT  446

seq1  GCCATGTTCCTGCCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTTCCTGCCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGC  496

seq1  CAGCCCCAATTAAATGTTGTCCTTATAAAACTTGCCTTGGTCATGATGTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCAATTAAATGTTGTCCTTATAAAACTTGCCTTGGTCATGATGTC  546

seq1  TCTTCACAGCAGTAAAACCCTAAGATAGCCACTAATCCTACAACGACAGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAGCAGTAAAACCCTAAGATAGCCACTAATCCTACAACGACAGT  596

seq1  CCTTTCCACAGTCGTGGCCTCACCTAAACACAAGTGTCTACTAGAAGTTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCACAGTCGTGGCCTCACCTAAACACAAGTGTCTACTAGAAGTTT  646

seq1  TATCTCCAAATATCATCAGATTGGAGGACCAGGCTTCCACACGTAGATTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCAAATATCATCAGATTGGAGGACCAGGCTTCCACACGTAGATTT  696

seq1  AGAGGGTTTCACATTCAGCCCATGACGACATCTCAGTGGTCTTCAGGAGG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTTTCACATTCAGCCCATGACGACATCTCAGTGGTCTTCAGGAGG  746

seq1  CTCTGAGGTGTAAGAGAACTAATTACCCAGCATGCTTTTGAGGTAGGGCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGTGTAAGAGAACTAATTACCCAGCATGCTTTTGAGGTAGGGCT  796

seq1  ATGCTATTGGGGCGGGGTGGGCCATGAGGGTGTATGTGTGCATATGTCTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTGGGGCGGGGTGGGCCATGAGGGTGTATGTGTGCATATGTCTG  846

seq1  CCTTGCTGTGTCTTCAGTCCATTGATGATCATGATTAGATTTTCTGTAAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGTGTCTTCAGTCCATTGATGATCATGATTAGATTTTCTGTAAT  896

seq1  CTCATTTATTCCCATTTGACCTGTGTCCTGTGTTGTGCTAACAACCTTCC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTATTCCCATTTGACCTGTGTCCTGTGTTGTGCTAACAACCTTCC  946

seq1  AGTTTTAGTGAGATCTTGTGTATTTGCCCTTATGTACCCATGACTTTCTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGTGAGATCTTGTGTATTTGCCCTTATGTACCCATGACTTTCTG  996

seq1  TAGTAAACAGAGGTGCTGTTATGGGGCCAGTGACGTGTGACATCATTGTG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAACAGAGGTGCTGTTATGGGGCCAGTGACGTGTGACATCATTGTG  1046

seq1  ATGTGTGACATCATTGTGCCTCATGGTCCTTGGCATCATCAAGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGACATCATTGTGCCTCATGGTCCTTGGCATCATCAAGAATTC  1094