BAC Information

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BAC

Clone NameB6Ng01-242C20
Chromosome6 (Build37)
Map Location 143,737,190 - 143,879,803
singlet/doubletdoublet
Overlap geneSox5
Upstream geneGm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
Downstream gene4933425H06Rik, EG665149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242C20.bB6Ng01-242C20.g
ACCGA051890GA051891
length7351,097
definitionB6Ng01-242C20.b B6Ng01-242C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,737,190 - 143,737,924)(143,878,736 - 143,879,803)
sequence
gaattccaggcaggcttgggccacttatagaaccactttcccataaaagt
gctcaaagtaaatactgaaataaaaagcttatttttagctaagaacagat
actcacaaagctagaactggtaagtagaattaaggcataggaaataatat
ttatggtagaattctatagcaaaataatctcttaggcctatttgtcagtg
tgactgtgagactccagggagccttagcttactggggaccccctgagtga
accacgtggagccaggatcgatgcaaaaagcaagaggaatttattgttcc
ggtgcactggggtcctcctagacccgaaggagaggcagtgacccccagga
cccgttcagtgagttttttatatggtttccaggggcagaacagaacatcg
tcaactaggcacaatatgattggcagaacagtgcaccctttaaactgatt
ggtctttagggaatgaggtgacaaggacttcccttgtctgaaagtgagca
atggtcagccctgggggatgtgttcccacccacaggtctgttcctgccct
gtggtctgagaaatgctaattagtctctcccttctggagaggttagtgtt
tcatgaccttcccaaagttcctatgctgaccttttcattaccctctcaga
tatgtaaaaagaatcttcttttaagttcaacttcacttttttactgactg
aaataagtgagcatgtgtgtgtgtgtgtatgtgtg
gaattcacgtgcctccctggctgaagggggttctagggaacacaattatc
actatgaaggggaagctcacaccgaatgatgatggatactgctaagatca
gcatctgcttggtgctttcggctggtatcacaaaactgttgaatgtgatg
aattgttagtgtggctacatacacgcgcacctgtgggctgggcagactgc
tttgcagaacctcataagtctatcatgatgccccctcaattatgaagaat
taaggcctagacatgtgggcccggaaaataatctgagggaaagaaacatg
aaggctagaatgactgccttgtcacaagaggggccgtattgagattcatg
ttccttactgcagcacagagactctgagtgtgcacctgcacacgtttgcc
ttatgtcaacgttgcacatggcgaaagcccagcttcaggcagcccatcaa
gcctctctgtccttcattttccttgtctgtaagatgagggtagaaatgat
agcttcttgtgagggtgaaagtagctaaggcatagcgaatgctcaaagca
ataaaggtgacctttatcacccaccatgtactatggtatgggcaagatcc
aatggtaggtatttttagctgattaatagagctttcttagctgctattaa
aacagtgttattgaaattataaattgaaaattagggcataagagattttt
tatataaatatatatcaataaaactgaggcaaaataccttctatacaaaa
gaatactatatttcccctatgctctataacattgaaagtctataagaggg
ttagagagaccctcagagaatgagtacgtgctgctctggcagaaagctga
agtttattttccagcacccacatttgatggcttacaaatgtgtgtgtttc
tacctttcaggggtccaatgcccttttctggctttcgtgggtacttacac
tcatgtgcacatacccaaacacaggatacacgcgcatacacacagagata
aaaaagcccacaggaggcacgcatttacgtatctaaaaatagaaacatgg
ggtggccactggagtacagtttccatgtttgttaatgtgcacttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_143737190_143737924
seq2: B6Ng01-242C20.b_42_776

seq1  GAATTCCAGGCAGGCTTGGGCCACATATAGAAACACTTTCCCATAAAACT  50
      |||||||||||||||||||||||| ||||||| ||||||||||||||| |
seq2  GAATTCCAGGCAGGCTTGGGCCACTTATAGAACCACTTTCCCATAAAAGT  50

seq1  GCACAAAGTAAATACTGAAATAAAAAGCTTATTTTTAGCAAAGAACAGAT  100
      || |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCTCAAAGTAAATACTGAAATAAAAAGCTTATTTTTAGCTAAGAACAGAT  100

seq1  ACTCACAAAGCTAGAACTGGTAAGTAGAATTAAGGCATAGGAAATAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAAAGCTAGAACTGGTAAGTAGAATTAAGGCATAGGAAATAATAT  150

seq1  TTATGGTAGAATTCTATAGCAAAATAATCTCTTAGGCCTATTTGTCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTAGAATTCTATAGCAAAATAATCTCTTAGGCCTATTTGTCAGTG  200

seq1  TGACTGTAAGACTCCAGGGAGCCTTAGCTTACTGGGGACCCCCTGAGTGA  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGAGACTCCAGGGAGCCTTAGCTTACTGGGGACCCCCTGAGTGA  250

seq1  ACCACGTGGAGCCAGGATCGATGCAAAAAGCAAGAGGAATTTATTGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGTGGAGCCAGGATCGATGCAAAAAGCAAGAGGAATTTATTGTTCC  300

seq1  AGTGCACTGGGGTCCTCCTAGACCCAAAGGAGAGGCAGTGACCCCCAGGA  350
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGTGCACTGGGGTCCTCCTAGACCCGAAGGAGAGGCAGTGACCCCCAGGA  350

seq1  CCCGTTCAGTGAGTTTTTTATATGGTTTCCAGGGGCAGAACAGAACATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCCGTTCAGTGAGTTTTTTATATGGTTTCCAGGGGCAGAACAGAACATCG  400

seq1  GCAACTAGGCACAATATGATTGGCAGAACAGTGCACCCTTTAAACTGATT  450
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAGGCACAATATGATTGGCAGAACAGTGCACCCTTTAAACTGATT  450

seq1  GGTCTTTAGGGAATGAGGTGACAAGGACTTCCCTTGTCTGAAAGTGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTAGGGAATGAGGTGACAAGGACTTCCCTTGTCTGAAAGTGAGCA  500

seq1  ATGGTCAGCCCTGGGGGATGTGTTCCCACCCACAGGTCTGTTCCTGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCAGCCCTGGGGGATGTGTTCCCACCCACAGGTCTGTTCCTGCCCT  550

seq1  GTGGTCTGAGAAATGCTAATTAGTCTCTCCCTTCTGGAGAGGTTAGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTGAGAAATGCTAATTAGTCTCTCCCTTCTGGAGAGGTTAGTGTT  600

seq1  TCATGACCTTCCCAAAGTTCCTATGCTGACCTTTTCATTACCCTCTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACCTTCCCAAAGTTCCTATGCTGACCTTTTCATTACCCTCTCAGA  650

seq1  TATGTAAAAATAATCTTCTTTTAAGTTCAACTTCACTTTTTTACTGACTG  700
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAAAAGAATCTTCTTTTAAGTTCAACTTCACTTTTTTACTGACTG  700

seq1  AAATAAGTGAGCATGTGTGTGTGTGTGTATGTGTG  735
      |||||||||||||||||||||||||||||||||||
seq2  AAATAAGTGAGCATGTGTGTGTGTGTGTATGTGTG  735

seq1: chr6_143878736_143879803
seq2: B6Ng01-242C20.g_97_1160 (reverse)

seq1  AAAAAGTGCACAATAACAAAACATGGAAACCTGTACTCCAAGTGGCCACC  50
      |||||||||||| |||| ||||||||||| ||||||||| ||||||||||
seq2  AAAAAGTGCACATTAAC-AAACATGGAAA-CTGTACTCC-AGTGGCCACC  47

seq1  CCAATGTTTCTA-TTTTAGATACGTAAATGCGTTGCCTCTTGTGGGCTTT  99
      || ||||||||| ||||||||||||||||||| |||||| ||||||| ||
seq2  CC-ATGTTTCTATTTTTAGATACGTAAATGCG-TGCCTCCTGTGGGC-TT  94

seq1  TTTTATTCTTCTGTGTGTATGCGCGTGTAT-CTGTGTTTGGGTATGTGCA  148
      ||||||   ||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTAT--CTCTGTGTGTATGCGCGTGTATCCTGTGTTTGGGTATGTGCA  142

seq1  CATGAGTGT-AGTACCCACGAAAGCCAGAAAAGGGCATTGGACCCCTG-A  196
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  CATGAGTGTAAGTACCCACGAAAGCCAGAAAAGGGCATTGGACCCCTGAA  192

seq1  AGGTAGAAACACACACATTTGTAAGCCATCAAATGTGGGTGCTGGAAAAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAAACACACACATTTGTAAGCCATCAAATGTGGGTGCTGGAAAAT  242

seq1  AAACTTCAGCTTTCTGCCAGAGCAGCACGTACTCATTCTCTGAGGGTCTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCAGCTTTCTGCCAGAGCAGCACGTACTCATTCTCTGAGGGTCTC  292

seq1  TCTAACCCTCTTATAGACTTTCAATGTTATAGAGCATAGGGGAAATATAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCCTCTTATAGACTTTCAATGTTATAGAGCATAGGGGAAATATAG  342

seq1  TATTCTTTTGTATAGAAGGTATTTTGCCTCAGTTTTATTGATATATATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTTGTATAGAAGGTATTTTGCCTCAGTTTTATTGATATATATTT  392

seq1  ATATAAAAAATCTCTTATGCCCTAATTTTCAATTTATAATTTCAATAACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAAATCTCTTATGCCCTAATTTTCAATTTATAATTTCAATAACA  442

seq1  CTGTTTTAATAGCAGCTAAGAAAGCTCTATTAATCAGCTAAAAATACCTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAATAGCAGCTAAGAAAGCTCTATTAATCAGCTAAAAATACCTA  492

seq1  CCATTGGATCTTGCCCATACCATAGTACATGGTGGGTGATAAAGGTCACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGATCTTGCCCATACCATAGTACATGGTGGGTGATAAAGGTCACC  542

seq1  TTTATTGCTTTGAGCATTCGCTATGCCTTAGCTACTTTCACCCTCACAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCTTTGAGCATTCGCTATGCCTTAGCTACTTTCACCCTCACAAG  592

seq1  AAGCTATCATTTCTACCCTCATCTTACAGACAAGGAAAATGAAGGACAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATCATTTCTACCCTCATCTTACAGACAAGGAAAATGAAGGACAGA  642

seq1  GAGGCTTGATGGGCTGCCTGAAGCTGGGCTTTCGCCATGTGCAACGTTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTGATGGGCTGCCTGAAGCTGGGCTTTCGCCATGTGCAACGTTGA  692

seq1  CATAAGGCAAACGTGTGCAGGTGCACACTCAGAGTCTCTGTGCTGCAGTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGCAAACGTGTGCAGGTGCACACTCAGAGTCTCTGTGCTGCAGTA  742

seq1  AGGAACATGAATCTCAAGATGGCCCCTCATGTGACAAGGCAGTCATTCTA  796
      ||||||||||||||||| | |||||||| |||||||||||||||||||||
seq2  AGGAACATGAATCTCAATACGGCCCCTCTTGTGACAAGGCAGTCATTCTA  792

seq1  GCCTTCATGTTTCTTTCCCTCAGATTATCTTTTGGGGCCACATGTCTCTG  846
      |||||||||||||||||||||||||||| ||  ||| ||||||||||  |
seq2  GCCTTCATGTTTCTTTCCCTCAGATTATTTTCCGGGCCCACATGTCTAGG  842

seq1  CCTTAATTCTTCATAATTGAGGGGGCATCATGCTAGACTTCTGAGGTTCT  896
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  CCTTAATTCTTCATAATTGAGGGGGCATCATGATAGACTTATGAGGTTCT  892

seq1  GCAATGCAGTCTGCACAGCCCACACGTGTGCTTGTATGTAGCCACACTAA  946
      |||| ||||||||| ||||||||| ||| || ||||||||||||||||||
seq2  GCAAAGCAGTCTGCCCAGCCCACAGGTGCGCGTGTATGTAGCCACACTAA  942

seq1  CAATTCATCACATTCAACAGTTTTGTGATACCAGCCGAAAGCACCAAGCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCATCACATTCAACAGTTTTGTGATACCAGCCGAAAGCACCAAGCA  992

seq1  GCTGCTGATCTTAGCAGTATCCATCCTCATTCGGACTGAGCTTCCCATTT  1046
      | ||||||||||||||||||||||| ||||||||  |||||||||| || 
seq2  GATGCTGATCTTAGCAGTATCCATCATCATTCGGTGTGAGCTTCCCCTTC  1042

seq1  ATAGTGATAATTGTGTTCCCTA  1068
      ||||||||||||||||||||||
seq2  ATAGTGATAATTGTGTTCCCTA  1064