BAC Information

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BAC

Clone NameB6Ng01-242D15
Chromosome6 (Build37)
Map Location 54,602,732 - 54,722,507
singlet/doubletdoublet
Overlap geneLOC100041292, 2410066E13Rik
Upstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8
Downstream geneZnrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242D15.bB6Ng01-242D15.g
ACCGA051928GA051929
length1,031967
definitionB6Ng01-242D15.b B6Ng01-242D15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,721,866 - 54,722,507)(54,602,732 - 54,603,687)
sequence
gaattctctgcagatgacaagcactcccagctgagtccagggcaggtccg
acccaaccccacgcagcaggtgcacccagtatctatgctttgtgtgtctt
acaggattgaagatgactttgtttttgaagagtttcaaggcaggatggta
tcctgggttctataagaaagcagactgagcaagtcatgtgagccaaccag
gaagcagcactcctccgtgacctcagcactagttcctgcttctgggttcc
tgccctgtttgagttcctgttctaactaccttcgattctgaactgcgatg
tggaagtggaagtcaaataaaccttttcctccccaacttgctttctggtc
atggtactttgttgcagcaatagaaaccctaagacagcatcctaagatag
gggatggtgacacatgccttcaatcccagtacttggaatgcagaggcagg
aggatctctaaggccagcctggtctacagagcaagttccagggcagctac
agagaaaccctgtctcaaaaaaccagaaaacaaacaaacaaaaaaccagt
gtcccagtttggcttctaccagctactctggtgctgaaaatattaactaa
tttttctaagcctcagttttctggtcaataaaataggataattctattag
catttaacagttgtatccaaatagagtggctttaaaacaatgggcatgta
ttctctcacagagtctgggaatcaggaacttaagggagacttagctgggt
ctggctcctgttgtagctcacaactgtcggccggggatatggtcatttga
agtctagcttgggctgtggggtctgcttctgagggtgaatgatcatgtga
caggtacattgctggtagtcttgggtctgaaggcctcagtgttttgtttt
gttttgtgttgttttacccacataggcccctaaagggatttggtgccact
atttccagagcatgtaggtggggcctgcgatcaatctgaaaagacagagg
cagaggtccgcccaccacctttcatgataca
gaattctacatcagcacatcacagcgctagctgcacatccgagcgcatca
ctgtgctgctcacagtgggaagatacagagccagcccagatgcccatcga
tagaccgtcagagggagaaaatgtgctgagcggtgaagaatgcaattatg
acatttataagatgaatgtggagctcacagtgttagctaaaataaaccag
actaaaggggtcatgagaaagaagggagagggaaaacaagagaagtagaa
tatgtgtgtcagggaaatggaggtgggaagagtcagcaggatgggggagg
ggctacatggcggacagttgtgttgggggagagatgaataagaaaacgta
taatgccaggcacatagtgcaagcctttaatcccagaactcgggaggcaa
tggcaagtagatccagataactttgagactagcctggtctacaaattgaa
cttcagggcagctaggactatagagagagaccctatctcaaaaagccaaa
aggaagaaaagagaaaacatataatgatctatatgcatgacactgccaca
atgaaacccattgtttatatgctaccaaaaagttaaactaattgaatgaa
tggtctgtgttctaggaagtccaacagaaaatgctggacattcaaatacc
ctgagaaggctacatcaccactgatccatagaagtaagtcatcaggggcc
tggattcagtgaaaacacacacacacacacacacacacacacacacacac
acacacacacacacacacacacacacaaaagaaacacagagcttagtgac
agaaaagcagcagcaggtagtcattttccaaaattcttgggtagaaaaag
aaaaagagaaagaaggaaaagaaaggaaggaaaagaatggaaggatggaa
gaaggaaggaaggaaggaaggaaggatggaaggagggaaagaaaggaagg
aaaggaaacgaaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_54721866_54722507
seq2: B6Ng01-242D15.b_49_690 (reverse)

seq1  ATTATCCTATTTTATTGACCAGAAAACTGAGGCTTAGAAAAATTAGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTATTTTATTGACCAGAAAACTGAGGCTTAGAAAAATTAGTTAA  50

seq1  TATTTTCAGCACCAGAGTAGCTGGTAGAAGCCAAACTGGGACACTGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAGCACCAGAGTAGCTGGTAGAAGCCAAACTGGGACACTGGTTT  100

seq1  TTTGTTTGTTTGTTTTCTGGTTTTTTGAGACAGGGTTTCTCTGTAGCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTTCTGGTTTTTTGAGACAGGGTTTCTCTGTAGCTGC  150

seq1  CCTGGAACTTGCTCTGTAGACCAGGCTGGCCTTAGAGATCCTCCTGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTTGCTCTGTAGACCAGGCTGGCCTTAGAGATCCTCCTGCCTC  200

seq1  TGCATTCCAAGTACTGGGATTGAAGGCATGTGTCACCATCCCCTATCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCAAGTACTGGGATTGAAGGCATGTGTCACCATCCCCTATCTTA  250

seq1  GGATGCTGTCTTAGGGTTTCTATTGCTGCAACAAAGTACCATGACCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGTCTTAGGGTTTCTATTGCTGCAACAAAGTACCATGACCAGAA  300

seq1  AGCAAGTTGGGGAGGAAAAGGTTTATTTGACTTCCACTTCCACATCGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTTGGGGAGGAAAAGGTTTATTTGACTTCCACTTCCACATCGCAG  350

seq1  TTCAGAATCGAAGGTAGTTAGAACAGGAACTCAAACAGGGCAGGAACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATCGAAGGTAGTTAGAACAGGAACTCAAACAGGGCAGGAACCCA  400

seq1  GAAGCAGGAACTAGTGCTGAGGTCACGGAGGAGTGCTGCTTCCTGGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGAACTAGTGCTGAGGTCACGGAGGAGTGCTGCTTCCTGGTTGG  450

seq1  CTCACATGACTTGCTCAGTCTGCTTTCTTATAGAACCCAGGATACCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGACTTGCTCAGTCTGCTTTCTTATAGAACCCAGGATACCATCC  500

seq1  TGCCTTGAAACTCTTCAAAAACAAAGTCATCTTCAATCCTGTAAGACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGAAACTCTTCAAAAACAAAGTCATCTTCAATCCTGTAAGACACA  550

seq1  CAAAGCATAGATACTGGGTGCACCTGCTGCGTGGGGTTGGGTCGGACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATAGATACTGGGTGCACCTGCTGCGTGGGGTTGGGTCGGACCTG  600

seq1  CCCTGGACTCAGCTGGGAGTGCTTGTCATCTGCAGAGAATTC  642
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGACTCAGCTGGGAGTGCTTGTCATCTGCAGAGAATTC  642

seq1: chr6_54602732_54603687
seq2: B6Ng01-242D15.g_68_1034

seq1  GAATTCTACATCAGCACATCACAGCGCTAGCTGCACATCCGAGCGCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCAGCACATCACAGCGCTAGCTGCACATCCGAGCGCATCA  50

seq1  CTGTGCTGCTCACAGTGGGAAGATACAGAGCCAGCCCAGATGCCCATCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGCTCACAGTGGGAAGATACAGAGCCAGCCCAGATGCCCATCGA  100

seq1  TAGACCGTCAGAGGGAGAAAATGTGCTGAGCGGTGAAGAATGCAATTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCGTCAGAGGGAGAAAATGTGCTGAGCGGTGAAGAATGCAATTATG  150

seq1  ACATTTATAAGATGAATGTGGAGCTCACAGTGTTAGCTAAAATAAACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATAAGATGAATGTGGAGCTCACAGTGTTAGCTAAAATAAACCAG  200

seq1  ACTAAAGGGGTCATGAGAAAGAAGGGAGAGGGAAAACAAGAGAAGTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGGGGTCATGAGAAAGAAGGGAGAGGGAAAACAAGAGAAGTAGAA  250

seq1  TATGTGTGTCAGGGAAATGGAGGTGGGAAGAGTCAGCAGGATGGGGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTCAGGGAAATGGAGGTGGGAAGAGTCAGCAGGATGGGGGAGG  300

seq1  GGCTACATGGCGGACAGTTGTGTTGGGGGAGAGATGAATAAGAAAACGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACATGGCGGACAGTTGTGTTGGGGGAGAGATGAATAAGAAAACGTA  350

seq1  TAATGCCAGGCACATAGTGCAAGCCTTTAATCCCAGAACTCGGGAGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAGGCACATAGTGCAAGCCTTTAATCCCAGAACTCGGGAGGCAA  400

seq1  TGGCAAGTAGATCCAGATAACTTTGAGACTAGCCTGGTCTACAAATTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTAGATCCAGATAACTTTGAGACTAGCCTGGTCTACAAATTGAA  450

seq1  CTTCAGGGCAGCTAGGACTATAGAGAGAGACCCTATCTCAAAAAGCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGCAGCTAGGACTATAGAGAGAGACCCTATCTCAAAAAGCCAAA  500

seq1  AGGAAGAAAAGAGAAAACATATAATGATCTATATGCATGACACTGCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAAGAGAAAACATATAATGATCTATATGCATGACACTGCCACA  550

seq1  ATGAAACCCATTGTTTATATGCTACCAAAAAGTTAAACTAATTGAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACCCATTGTTTATATGCTACCAAAAAGTTAAACTAATTGAATGAA  600

seq1  TGGTCTGTGTTCTAGGAAGTCCAACAGAAAATGCTGGACATTCAAATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGTGTTCTAGGAAGTCCAACAGAAAATGCTGGACATTCAAATACC  650

seq1  CTGAGAAGGCTACATCACCACTGATCCATAGAAGTAAGTCATCAGGGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGGCTACATCACCACTGATCCATAGAAGTAAGTCATCAGGGGCC  700

seq1  TGGATTCAGTGAAAACACACACACACACACACACACACACACACACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCAGTGAAAACACACACACACACACACACACACACACACACACAC  750

seq1  ACACACACACACACACACACACACAC-AAAGAAACACAGAGCTTAGTGAC  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACAAAAGAAACACAGAGCTTAGTGAC  800

seq1  AG-AAAGCAGCAGCAGGTAGTCA-TTTCCAAAATTC-TGGGTAG-AAAAG  845
      || |||||||||||||||||||| |||||||||||| ||||||| |||||
seq2  AGAAAAGCAGCAGCAGGTAGTCATTTTCCAAAATTCTTGGGTAGAAAAAG  850

seq1  AAAAAGAGAAAGAAGGAAAAGAAAGGAAGGAAAAGAAAGGAAGGA---AG  892
      ||||||||||||||||||||||||||||||||||||| |||||||   | 
seq2  AAAAAGAGAAAGAAGGAAAAGAAAGGAAGGAAAAGAATGGAAGGATGGAA  900

seq1  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG---GGAAGG  939
      |||||||||||||||||||||||||| ||||||| |||| |   ||||||
seq2  GAAGGAAGGAAGGAAGGAAGGAAGGATGGAAGGAGGGAAAGAAAGGAAGG  950

seq1  AAAGGAAAGGAAAGGAA  956
      |||||||| ||||||||
seq2  AAAGGAAACGAAAGGAA  967