BAC Information

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BAC

Clone NameB6Ng01-242E01
Chromosome6 (Build37)
Map Location 119,757,072 - 119,902,349
singlet/doubletdoublet
Overlap geneErc1, LOC666887, Rad52, Wnk1
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14
Downstream geneEG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242E01.bB6Ng01-242E01.g
ACCGA051948GA051949
length1,1771,124
definitionB6Ng01-242E01.b B6Ng01-242E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,757,072 - 119,758,242)(119,901,242 - 119,902,349)
sequence
gaattcagatcctaagctatacatgtatcaagtattacacaaaagcaagc
tacttcaaacatttcttaatgatgaaaagtttctacaaaaaacaattact
tttaaacagaacaaacagctaatcaatgtaaatttaatacttatactaca
tgatttgtaaggggtactatgaaggaatatgaaaaagagattctataagg
ttcctcccacctatcacatttacaattctaaacaagtattatagttcact
caatagcattcaaatatttattgaattccaagtgactaattctgtatttt
atcttgtaatgacatacaaatgtacagatttaatcttagtcttcactatg
ttttttattatgtgacaaatttacattcattacatgaagaaaaagtatta
acaaaataatgttaatcaataatcctacactgaggaaacacactcaaata
gatctttctgagtttctgagtcaatattaactttacaagagagaccaaag
tgaaacgacaataacaaagaactggtacttactaaacaaaatccccagtt
ctaaattctccctgagacttaatttatttaacccctacatccttctcatg
atcgagcattatcttcatcgtacagatcagagatctctctacattccttg
gatcagtatctctaagcttactgaatccacagtctgtgctttaaaacagt
gctataattaagctatactacttccaggataaacacacacacacacacac
acacacacacacacacacacacacacacgttatatgttccctgtaatgca
tagtgaacatcttcctatttcacacccccatttctctgcctccaactttc
agatcaagatgtaagttctcagctactgctctagcatcatgcctgcttgc
ctgatgccatgtttcctgaaagatggtcatagattctaagcctgcccagt
aagcctccaattaaatgctttattttataagttctccttggtcatgatcc
tttcttcataacaatagaaaagacagaagaaaaaagaatgagagggcaag
gtatggtgaacacagccctttatcccaacactcaagaaggcaagatgctg
gtagaacttcaagacaactaggaatatattagaggaatcctgtcctcaat
agctgatgttaaataaatacaataatt
gaattcatctctgcactttgctctacctgtcctattgcacactctggtaa
gatgctggctgcatggcaaattgtagtttcacagtgcctagcaaataggt
tggctgagttcacaccaacagtctgtactagcaactagctttggaaactc
tcaaaatgtaagcacactgtttttagatgttgaatattaagaattactag
tagcttcattgcttctaggaattatagcggggtaacaaaaaagaaaggga
acataagcaattggtggatggttatttcatatttaaatatatatatgtat
aaatgccaaaatttgaattaccctttcaatctacagagtactcagggagt
ctctcaggctgctcctccagaacaaactccaataacacagtcacaaccta
ctcagcctgttccattggttacctctgcagacaggtaagtaaactaaaac
actcttttgagtagtaggcaggaatatgaaacttcagaataatatgcctt
tgaatcttattatacacgattttccccctcaaagtgcacattcagacgtt
gcttctggtatgagtgatggcaatgagaatgctccatcatccagcgggag
gcatgaagggaggacaacaaaacggcattatagaaaatccgtaagaagtc
gctctcggcatgaaaagacttctcgcccaaaactgaggattttaaatgta
aatattgatttgtgaccattgtattgcttaaagaatttagcacttttaat
tttagaaatcatgaaatctaaaccactcactttgttaaaataaagataac
tcatctttatatataatttcatagcaactttttatttaattacacaattt
cttctattgagtatcacatttcatttttgttgttgcacctagctctagag
ttttaactagtagaaaaaacagactagatgcttttgctaatgggaagttg
aaaaagaagctcaagatcttctcacattattttcttttagccaaatttaa
aaatttaaggatggtcaaagggtggtggcacacaccttttaaatctagca
ctttgacaggcagagttaggcagattttctgagttcaggacacttacacc
aagagaaacctttttctcaaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_119757072_119758242
seq2: B6Ng01-242E01.b_46_1222

seq1  GAATTCAGATCCTAAGCTATACATGTATCAAGTATTACACAAAAGCAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCTAAGCTATACATGTATCAAGTATTACACAAAAGCAAGC  50

seq1  TACTTCAAACATTTCTTAATGATGAAAAGTTTCTACAAAAAACAATTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAAACATTTCTTAATGATGAAAAGTTTCTACAAAAAACAATTACT  100

seq1  TTTAAACAGAACAAACAGCTAATCAATGTAAATTTAATACTTATACTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAGAACAAACAGCTAATCAATGTAAATTTAATACTTATACTACA  150

seq1  TGATTTGTAAGGGGTACTATGAAGGAATATGAAAAAGAGATTCTATAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGTAAGGGGTACTATGAAGGAATATGAAAAAGAGATTCTATAAGG  200

seq1  TTCCTCCCACCTATCACATTTACAATTCTAAACAAGTATTATAGTTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCACCTATCACATTTACAATTCTAAACAAGTATTATAGTTCACT  250

seq1  CAATAGCATTCAAATATTTATTGAATTCCAAGTGACTAATTCTGTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCATTCAAATATTTATTGAATTCCAAGTGACTAATTCTGTATTTT  300

seq1  ATCTTGTAATGACATACAAATGTACAGATTTAATCTTAGTCTTCACTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTAATGACATACAAATGTACAGATTTAATCTTAGTCTTCACTATG  350

seq1  TTTTTTATTATGTGACAAATTTACATTCATTACATGAAGAAAAAGTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTATGTGACAAATTTACATTCATTACATGAAGAAAAAGTATTA  400

seq1  ACAAAATAATGTTAATCAATAATCCTACACTGAGGAAACACACTCAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAATGTTAATCAATAATCCTACACTGAGGAAACACACTCAAATA  450

seq1  GATCTTTCTGAGTTTCTGAGTCAATATTAACTTTACAAGAGAGACCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTCTGAGTTTCTGAGTCAATATTAACTTTACAAGAGAGACCAAAG  500

seq1  TGAAACGACAATAACAAAGAACTGGTACTTACTAAACAAAATCCCCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACGACAATAACAAAGAACTGGTACTTACTAAACAAAATCCCCAGTT  550

seq1  CTAAATTCTCCCTGAGACTTAATTTATTTAACCCCTACATCCTTCTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTCTCCCTGAGACTTAATTTATTTAACCCCTACATCCTTCTCATG  600

seq1  ATCGAGCATTATCTTCATCGTACAGATCAGAGATCTCTCTACATTCCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAGCATTATCTTCATCGTACAGATCAGAGATCTCTCTACATTCCTTG  650

seq1  GATCAGTATCTCTAAGCTTACTGAATCCACAGTCTGTGCTTTAAAACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTATCTCTAAGCTTACTGAATCCACAGTCTGTGCTTTAAAACAGT  700

seq1  GCTATAATTAAGCTATACTACTTCCAGGATAAACACACACACACACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAATTAAGCTATACTACTTCCAGGATAAACACACACACACACACAC  750

seq1  ACACACACACACACACACACACACACACGTTATATGTTCCCTGTAATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACGTTATATGTTCCCTGTAATGCA  800

seq1  TAGTGAACATCTTCCTATTTCACACCCCCATTTCTCTGCCTCCAACTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAACATCTTCCTATTTCACACCCCCATTTCTCTGCCTCCAACTTTC  850

seq1  AGATCAAGATGTAAGTTCTCAGCTACTGCTCTAGCATCATGCCTGCTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGATGTAAGTTCTCAGCTACTGCTCTAGCATCATGCCTGCTTGC  900

seq1  CTGATGCCATGTTTCCTGAAAAGATGGTCATAGATTCTAAGCCTGCCCAG  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGATGCCATGTTTCCTG-AAAGATGGTCATAGATTCTAAGCCTGCCCAG  949

seq1  TAAGCTCCAAATTAAATGCTTTATTTTATAAGTTCT-CTTGGTCATGAT-  998
      |||||  | ||||||||||||||||||||||||||| |||||||||||| 
seq2  TAAGCCTCCAATTAAATGCTTTATTTTATAAGTTCTCCTTGGTCATGATC  999

seq1  CTTTCTTCATAACAATAGAAAAGACAGAAG-AAAAAGAATGAGAGGGC-A  1046
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  CTTTCTTCATAACAATAGAAAAGACAGAAGAAAAAAGAATGAGAGGGCAA  1049

seq1  GGTATGGTG-ACACAAGCCTTTATTCCCAACACTC-AGGAGGC-AGATGC  1093
      ||||||||| |||||  |||||| ||||||||||| || |||| ||||||
seq2  GGTATGGTGAACACAGCCCTTTA-TCCCAACACTCAAGAAGGCAAGATGC  1098

seq1  TGGTAGAACTCCAAGACAACTAGGGATATA-TAGAGATATCCTGT-CTCA  1141
      |||||||||| ||||||||||||| ||||| |||||  ||||||| ||||
seq2  TGGTAGAACTTCAAGACAACTAGGAATATATTAGAGGAATCCTGTCCTCA  1148

seq1  ATAGCTGGAATG-TAAATAAATAAAATAATT  1171
      |||||||  ||| |||||||||| |||||||
seq2  ATAGCTG--ATGTTAAATAAATACAATAATT  1177

seq1: chr6_119901242_119902349
seq2: B6Ng01-242E01.g_67_1190 (reverse)

seq1  GTGTTTGAG-ACAGGGTTTCTCT--GTGTAGTTGTCTTGAACTCAG-ATA  46
      ||||||||| | | |||||||||  |||||  |||| ||||||||| | |
seq2  GTGTTTGAGAAAAAGGTTTCTCTTGGTGTAAGTGTCCTGAACTCAGAAAA  50

seq1  TCTGCCTACCTCTGCCTGTC-AAGTGCTAGGATT-AAAGGTGTGTGCCAC  94
      |||||||| ||||||||||| |||||||||  || |||||||||||||||
seq2  TCTGCCTAACTCTGCCTGTCAAAGTGCTAGATTTAAAAGGTGTGTGCCAC  100

seq1  CACCC-TTGACCATCCCTTAAATTTTAAA-TTGGCT-AAAGAAA--TATG  139
      ||||| |||||||||| | || ||||||| |||||| |||||||   |||
seq2  CACCCTTTGACCATCCTTAAATTTTTAAATTTGGCTAAAAGAAAATAATG  150

seq1  TGAGAAGATCTTGAGCT--CTTTTCAACTT-CCATTAGCAAAAGCATCTA  186
      |||||||||||||||||   |||||||||| |||||||||||||||||||
seq2  TGAGAAGATCTTGAGCTTCTTTTTCAACTTCCCATTAGCAAAAGCATCTA  200

seq1  GTCTG-TTTTTCTACTAGTTAAAACTCTAGAGCTAGGTGCAACAAC-AAA  234
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  GTCTGTTTTTTCTACTAGTTAAAACTCTAGAGCTAGGTGCAACAACAAAA  250

seq1  ATGAAATGTGATACTCAATAGAAGAAATTGTGTAATTAAATAAAAAGTTG  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGTGATACTCAATAGAAGAAATTGTGTAATTAAATAAAAAGTTG  300

seq1  CTATGAAATTATATATAAAGATGAGTTATCTTTATTTTAACAAAGTGAGT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAATTATATATAAAGATGAGTTATCTTTATTTTAACAAAGTGAGT  350

seq1  GGTTTAGATTTCATGATTTCTAAAATTAAAAGTGCTAAATTCTTTAAGCA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGATTTCATGATTTCTAAAATTAAAAGTGCTAAATTCTTTAAGCA  400

seq1  ATACAATGGTCACAAATCAATATTTACATTTAAAATCCTCAGTTTTGGGC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATGGTCACAAATCAATATTTACATTTAAAATCCTCAGTTTTGGGC  450

seq1  GAGAAGTCTTTTCATGCCGAGAGCGACTTCTTACGGATTTTCTATAATGC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTCTTTTCATGCCGAGAGCGACTTCTTACGGATTTTCTATAATGC  500

seq1  CGTTTTGTTGTCCTCCCTTCATGCCTCCCGCTGGATGATGGAGCATTCTC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTGTTGTCCTCCCTTCATGCCTCCCGCTGGATGATGGAGCATTCTC  550

seq1  ATTGCCATCACTCATACCAGAAGCAACGTCTGAATGTGCACTTTGAGGGG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCATCACTCATACCAGAAGCAACGTCTGAATGTGCACTTTGAGGGG  600

seq1  GAAAATCGTGTATAATAAGATTCAAAGGCATATTATTCTGAAGTTTCATA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCGTGTATAATAAGATTCAAAGGCATATTATTCTGAAGTTTCATA  650

seq1  TTCCTGCCTACTACTCAAAAGAGTGTTTTAGTTTACTTACCTGTCTGCAG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCTACTACTCAAAAGAGTGTTTTAGTTTACTTACCTGTCTGCAG  700

seq1  AGGTAACCAATGGAACAGGCTGAGTAGGTTGTGACTGTGTTATTGGAGTT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACCAATGGAACAGGCTGAGTAGGTTGTGACTGTGTTATTGGAGTT  750

seq1  TGTTCTGGAGGAGCAGCCTGAGAGACTCCCTGAGTACTCTGTAGATTGAA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGAGGAGCAGCCTGAGAGACTCCCTGAGTACTCTGTAGATTGAA  800

seq1  AGGGTAATTCAAATTTTGGCATTTATACATATATATATTTAAATATGAAA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAATTCAAATTTTGGCATTTATACATATATATATTTAAATATGAAA  850

seq1  TAACCATCCACCAATTGCTTATGTTCCCTTTCTTTTTTGTTACCCCGCTA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATCCACCAATTGCTTATGTTCCCTTTCTTTTTTGTTACCCCGCTA  900

seq1  TAATTCCTAGAAGCAATGAAGCTACTAGTAATTCTTAATATTCAACATCT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCTAGAAGCAATGAAGCTACTAGTAATTCTTAATATTCAACATCT  950

seq1  AAAAACAGTGTGCTTACATTTTGAGAGTTTCCAAAGCTAGTTGCTAGTAC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGTGTGCTTACATTTTGAGAGTTTCCAAAGCTAGTTGCTAGTAC  1000

seq1  AGACTGTTGGTGTGAACTCAGCCAACCTATTTGCTAGGCACTGTGAAACT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTTGGTGTGAACTCAGCCAACCTATTTGCTAGGCACTGTGAAACT  1050

seq1  ACAATTTGCCATGCAGCCAGCATCTTACCAGAGTGTGCAATAGGACAGGT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTGCCATGCAGCCAGCATCTTACCAGAGTGTGCAATAGGACAGGT  1100

seq1  AGAGCAAAGTGCAGAGATGAATTC  1108
      ||||||||||||||||||||||||
seq2  AGAGCAAAGTGCAGAGATGAATTC  1124