BAC Information

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BAC

Clone NameB6Ng01-242H14
Chromosome6 (Build37)
Map Location 94,199,867 - 94,326,866
singlet/doubletdoublet
Overlap geneMagi1, LOC100043262
Upstream geneLOC100043253, LOC665831
Downstream geneLOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242H14.bB6Ng01-242H14.g
ACCGA052106GA052107
length1,1571,071
definitionB6Ng01-242H14.b B6Ng01-242H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,199,867 - 94,201,012)(94,325,801 - 94,326,866)
sequence
gaattccaagagtaacataaatagaaaaattcctagtctcacacaccctt
gagtatagcagatttaaagcaaacacctggatgggcaaaactcataagag
agaccagaactgtgttagccacagaagcccaagaacttgcctttgaagcc
ataattataaacactggtcctggttacaattagaagagtcccctgcatac
attacataccattgccatcttaaaacaccatggctccttctatagccaat
tgacatttaatttaaacataatatataagagtattaaacatctcctgaat
tatcattccaaagtttggatttcatcaagatgaaacccatgcagttatga
atttgccatgttaaatagctttttcgtttttaatagaacacagagagcag
ctgtttacagagaagcacttgatttaatttggagctgatatgacctacag
ctctctggatgtgtttcaaggaagacttcagtacccccaccccccagcag
tctgctgggaagtgagagggggaagggaaggcacagtatgaaggaagtgt
ggcacctgaaggcaaagcgtcttcccgcctacatagcacccaggctatct
tcccattttgaggtcaccaggtatgatgaatctgattctgggtacaccag
gtatgatgaatctgaaatgtctcccagaggcctgtgttctgaatattggt
tccccagcccgtggcacaattcctacaactgtacaactcttacgagggga
gacctgcctggcacaagttagttggtaaggacaaaggagcccttaaaggt
tgcagacacttgttctggcctgttttctcagctattccgccatagtttca
catacacacacacacacacacacagagagagagagagagagagagagaga
gagagagagagagagacaaagagagagaaagagatagtcatgaactggcc
attgtcttccctgtgatgatggactggaattctctctgaaaccttgagcc
aaaaaaaatcaactttccttgctttcctttctgtaaggcaggtgtgtcat
agggggaaaaaacactgttagctaaccccatcctacttctaaacgacaga
tcccacctcctcgcctgtctagtaaatccacaggtacgtggggtctttcc
ctgctgg

gaattcagacaagtcctcggtttcttacagaaagcagtgagcatcagact
gggtaactacaaaatcactctaggctgactgtaaacgagtgggttaaact
tgaatctgggaccttttacacaccaagcataggaaacacttctgtgggta
agacctaacttcccatgagtttccattcacaagtctgtgaaaacagaaac
ttctcaggaaaccatggtatggagggctgagacacttctgaaaaaaatat
cttacacaatgttggcattggccccaacagcctaatgattgaaagattga
gcctgtgcaaattccacgcacacagcctctaatcccttccgaaggctaag
taaattccttgagcagggccaacattttcttctgagaatctcaatggaaa
aacactgaccagcacagaatgacgatggtgacaattatgaataacaatga
cagcttcttgggatttcttaagtattttgtgacaggagcttggcatccct
aacctcattatccatcacaaaacccttgtgttggagccgcacctatgata
ccagctgagtaatgaattacttgacactgtaataaacccaattatagaga
aatttagttgagtattgcccaggttactgagatcctcagagggaagtcta
ggatttaactctagaaataatgagagtaactactacgtagttttactctc
aaatagcatgagggccaatagaagcaaatttctgtttttaaagatgcttt
gaaaatgctaggcatttcaaaatccatgaaatgctgcttctggggtgtgt
gtgtgtgtacacgcatgcttgataccctaggaggtttctctgaaactgga
gttacagatggttgtgaatcaccatgtgggtggtgggaattgaacccagg
tcctcagcaggagcaacaaatgcccttaacctccaagctatctctgtagg
ccctgggtttaactgtggatttatgtgtaccttctaagttccacagcaga
cagatatgccaaggcctcattcataaacagcctaagcattatgcaaactt
gcttgagcacctctgttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_94199867_94201012
seq2: B6Ng01-242H14.b_50_1206

seq1  GAATTCCAAGAGTAACATAAATAGAAAAATTCCTAGTCTCACACACCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAGTAACATAAATAGAAAAATTCCTAGTCTCACACACCCTT  50

seq1  GAGTATAGCAGATTTAAAGCAAACACCTGGATGGGCAAAACTCATAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAGCAGATTTAAAGCAAACACCTGGATGGGCAAAACTCATAAGAG  100

seq1  AGACCAGAACTGTGTTAGCCACAGAAGCCCAAGAACTTGCCTTTGAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGAACTGTGTTAGCCACAGAAGCCCAAGAACTTGCCTTTGAAGCC  150

seq1  ATAATTATAAACACTGGTCCTGGTTACAATTAGAAGAGTCCCCTGCATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATAAACACTGGTCCTGGTTACAATTAGAAGAGTCCCCTGCATAC  200

seq1  ATTACATACCATTGCCATCTTAAAACACCATGGCTCCTTCTATAGCCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATACCATTGCCATCTTAAAACACCATGGCTCCTTCTATAGCCAAT  250

seq1  TGACATTTAATTTAAACATAATATATAAGAGTATTAAACATCTCCTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTAATTTAAACATAATATATAAGAGTATTAAACATCTCCTGAAT  300

seq1  TATCATTCCAAAGTTTGGATTTCATCAAGATGAAACCCATGCAGTTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTCCAAAGTTTGGATTTCATCAAGATGAAACCCATGCAGTTATGA  350

seq1  ATTTGCCATGTTAAATAGCTTTTTCGTTTTTAATAGAACACAGAGAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCATGTTAAATAGCTTTTTCGTTTTTAATAGAACACAGAGAGCAG  400

seq1  CTGTTTACAGAGAAGCACTTGATTTAATTTGGAGCTGATATGACCTACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTACAGAGAAGCACTTGATTTAATTTGGAGCTGATATGACCTACAG  450

seq1  CTCTCTGGATGTGTTTCAAGGAAGACTTCAGTACCCCCACCCCCCAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGATGTGTTTCAAGGAAGACTTCAGTACCCCCACCCCCCAGCAG  500

seq1  TCTGCTGGGAAGTGAGAGGGGGAAGGGAAGGCACAGTATGAAGGAAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGGAAGTGAGAGGGGGAAGGGAAGGCACAGTATGAAGGAAGTGT  550

seq1  GGCACCTGAAGGCAAAGCGTCTTCCCGCCTACATAGCACCCAGGCTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTGAAGGCAAAGCGTCTTCCCGCCTACATAGCACCCAGGCTATCT  600

seq1  TCCCATTTTGAGGTCACCAGGTATGATGAATCTGATTCTGGGTACACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTTGAGGTCACCAGGTATGATGAATCTGATTCTGGGTACACCAG  650

seq1  GTATGATGAATCTGAAATGTCTCCCAGAGGCCTGTGTTCTGAATATTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATGAATCTGAAATGTCTCCCAGAGGCCTGTGTTCTGAATATTGGT  700

seq1  TCCCCAGCCCGTGGCACAATTCCTACAACTGTACAACTCTTACGAGGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCCCGTGGCACAATTCCTACAACTGTACAACTCTTACGAGGGGA  750

seq1  GACCTGCCTGGCACAAGTTAGTTGGTAAGGACAAAGGAGCCCTTAAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCCTGGCACAAGTTAGTTGGTAAGGACAAAGGAGCCCTTAAAGGT  800

seq1  TGCAGACACTTGTTCTGGCCTGTTTTCTCAGCTATTCCGCCATAGTTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACACTTGTTCTGGCCTGTTTTCTCAGCTATTCCGCCATAGTTTCA  850

seq1  CATACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGA  900

seq1  GAGAGAGAGAGAGAGAGAAAGAGAGAGAAAGAGAGAGTCATGAACTGGCC  950
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  GAGAGAGAGAGAGAGACAAAGAGAGAGAAAGAGATAGTCATGAACTGGCC  950

seq1  A-TGTCTTCCCTGTGATGATGGACTG--AATCTCTCTGAAACTTTGAGCC  997
      | ||||||||||||||||||||||||  | |||||||||||| |||||||
seq2  ATTGTCTTCCCTGTGATGATGGACTGGAATTCTCTCTGAAACCTTGAGCC  1000

seq1  AAAAAAAATC-ACTT--CCTGC-TTCCTTTCTATAAGGCA-GTGTGTCAT  1042
      |||||||||| ||||  | ||| ||||||||| ||||||| |||||||||
seq2  AAAAAAAATCAACTTTCCTTGCTTTCCTTTCTGTAAGGCAGGTGTGTCAT  1050

seq1  AGGGGAAAAAACAACTGTTAGCTTACCCCATCCCTACTTCTAAACGACAG  1092
      ||||| |||||  |||||||||| ||||||| ||||||||||||||||||
seq2  AGGGGGAAAAAACACTGTTAGCTAACCCCAT-CCTACTTCTAAACGACAG  1099

seq1  -TCCCACCTCCTCG-CTGTCTAGTAAATCCACAGTCAC--TGGGTCTTCC  1138
       ||||||||||||| |||||||||||||||||||  ||   ||||||| |
seq2  ATCCCACCTCCTCGCCTGTCTAGTAAATCCACAGGTACGTGGGGTCTTTC  1149

seq1  CCTGCTGG  1146
      ||||||||
seq2  CCTGCTGG  1157


seq1: chr6_94325801_94326866
seq2: B6Ng01-242H14.g_67_1137 (reverse)

seq1  TCAGAACAGAGGTGCTCAAGCAAGTTTGCAT-ATGCTTTAGGCTGTTTAT  49
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  TCAGAACAGAGGTGCTCAAGCAAGTTTGCATAATGC-TTAGGCTGTTTAT  49

seq1  GAATGAG--CCTGGCATATCTGTCTGCTGT-GAACTTAGAA-GTACACAT  95
      |||||||  | ||||||||||||||||||| |||||||||| ||||||||
seq2  GAATGAGGCCTTGGCATATCTGTCTGCTGTGGAACTTAGAAGGTACACAT  99

seq1  AAATCAACAGTTAAA-CCAGGGCCTACAGAGATAGCTTGGAGGTTAAGGG  144
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAATCCACAGTTAAACCCAGGGCCTACAGAGATAGCTTGGAGGTTAAGGG  149

seq1  CATTTGTTGCTCCTGCTGAGGACCTGGGTTCAATTCCCACCACCCACATG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTGCTCCTGCTGAGGACCTGGGTTCAATTCCCACCACCCACATG  199

seq1  GTGATTCACAACCATCTGTAACTCCAGTTTCAGAGAAACCTCCTAGGGTA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCACAACCATCTGTAACTCCAGTTTCAGAGAAACCTCCTAGGGTA  249

seq1  TCAAGCATGCGTGTACACACACACACACCCCAGAAGCAGCATTTCATGGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCATGCGTGTACACACACACACACCCCAGAAGCAGCATTTCATGGA  299

seq1  TTTTGAAATGCCTAGCATTTTCAAAGCATCTTTAAAAACAGAAATTTGCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATGCCTAGCATTTTCAAAGCATCTTTAAAAACAGAAATTTGCT  349

seq1  TCTATTGGCCCTCATGCTATTTGAGAGTAAAACTACGTAGTAGTTACTCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGGCCCTCATGCTATTTGAGAGTAAAACTACGTAGTAGTTACTCT  399

seq1  CATTATTTCTAGAGTTAAATCCTAGACTTCCCTCTGAGGATCTCAGTAAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTCTAGAGTTAAATCCTAGACTTCCCTCTGAGGATCTCAGTAAC  449

seq1  CTGGGCAATACTCAACTAAATTTCTCTATAATTGGGTTTATTACAGTGTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAATACTCAACTAAATTTCTCTATAATTGGGTTTATTACAGTGTC  499

seq1  AAGTAATTCATTACTCAGCTGGTATCATAGGTGCGGCTCCAACACAAGGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATTCATTACTCAGCTGGTATCATAGGTGCGGCTCCAACACAAGGG  549

seq1  TTTTGTGATGGATAATGAGGTTAGGGATGCCAAGCTCCTGTCACAAAATA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGATGGATAATGAGGTTAGGGATGCCAAGCTCCTGTCACAAAATA  599

seq1  CTTAAGAAATCCCAAGAAGCTGTCATTGTTATTCATAATTGTCACCATCG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAAATCCCAAGAAGCTGTCATTGTTATTCATAATTGTCACCATCG  649

seq1  TCATTCTGTGCTGGTCAGTGTTTTTCCATTGAGATTCTCAGAAGAAAATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGTGCTGGTCAGTGTTTTTCCATTGAGATTCTCAGAAGAAAATG  699

seq1  TTGGCCCTGCTCAAGGAATTTACTTAGCCTTCGGAAGGGATTAGAGGCTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCTGCTCAAGGAATTTACTTAGCCTTCGGAAGGGATTAGAGGCTG  749

seq1  TGTGCGTGGAATTTGCACAGGCTCAATCTTTCAATCATTAGGCTGTTGGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTGGAATTTGCACAGGCTCAATCTTTCAATCATTAGGCTGTTGGG  799

seq1  GCCAATGCCAACATTGTGTAAGATATTTTTTTCAGAAGTGTCTCAGCCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGCCAACATTGTGTAAGATATTTTTTTCAGAAGTGTCTCAGCCCT  849

seq1  CCATACCATGGTTTCCTGAGAAGTTTCTGTTTTCACAGACTTGTGAATGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCATGGTTTCCTGAGAAGTTTCTGTTTTCACAGACTTGTGAATGG  899

seq1  AAACTCATGGGAAGTTAGGTCTTACCCACAGAAGTGTTTCCTATGCTTGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATGGGAAGTTAGGTCTTACCCACAGAAGTGTTTCCTATGCTTGG  949

seq1  TGTGTAAAAGGTCCCAGATTCAAGTTTAACCCACTCGTTTACAGTCAGCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAAAGGTCCCAGATTCAAGTTTAACCCACTCGTTTACAGTCAGCC  999

seq1  TAGAGTGATTTTGTAGTTACCCAGTCTGATGCTCACTGCTTTCTGTAAGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGATTTTGTAGTTACCCAGTCTGATGCTCACTGCTTTCTGTAAGA  1049

seq1  AACCGAGGACTTGTCTGAATTC  1066
      ||||||||||||||||||||||
seq2  AACCGAGGACTTGTCTGAATTC  1071


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