BAC Information

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BAC

Clone NameB6Ng01-242K06
Chromosome6 (Build37)
Map Location 5,005,341 - 5,218,612
singlet/doubletdoublet
Overlap genePpp1r9a, Pon1, Pon3, Pon2
Upstream geneBet1, LOC667381, LOC100039965, Col1a2, Casd1, Sgce, Peg10, LOC100040018
Downstream geneAsb4, Pdk4, Dync1i1, Slc25a13, EG667462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242K06.bB6Ng01-242K06.g
ACCGA052231GA052232
length1,1401,181
definitionB6Ng01-242K06.b B6Ng01-242K06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,217,469 - 5,218,612)(5,005,341 - 5,006,479)
sequence
gaattcttgaagacaccattaaagcatcatggttacactttggactcaca
caggaaaaataccagttacttcactgtgaatctcaattgtttgaatactt
gtgtaagaattctatagaatgacgcctatgcacaggcctcatgtgcatcc
ttttcatattagccaatatatgttgcccaattgtttaccaaaagttctct
ccttatttttatgtgtacaatcacaacttagaagaaagggtttttaattt
gggggttgttttccagcattactgcattgaacaagttaaactaccacaat
tataatgggctgtgaatttgacattctttgacaaatcaagcgttctcatt
ttgtgattaaaaaaatctgtcttcaccattttagtacagaaaactaatat
agatcattcaaaccatctccagctggtccagtcaaagctctattttctcc
acctctaatatgctgtgtttgttgcagcttgctttcagcccacctccatc
ttttgaactctagccactgtggtctttgtgtggatgattctgccatctgc
atctctggctgcaggcatccaccacagcaccaggtggaaagagcagaccc
agtcactgttagtcacagccagccctttgatgtcagattatttcttcctt
ctgagcattctgtagagtccaggtccctgtcagaccaagggaggaaaggt
ctggactgtcatagagttgctcctcactcctgtttctgtttccacacttc
ccataagacaactagctctttatgttgctgatgcccctctgtagctcaca
ccgctttgccctatctcactggctttcagaaagcttcgtcctcctgtttt
gtgcaagtgtcccctcctttgatggtctgtcagccccctgacatttcttc
agtctctagaattgagctgtttttcttggtgctgttgactcagtgttcat
gagcccaaaccagtttgactggttcaacgtgttggaaatgtttgcagagc
ccagttatgtccctgtctgtgtgtagcttacacagtctagtgtctgggtc
tacttcaaggagactgctcactgatagcgagtttcagttcagcctcactc
actgccccctaggatagaacatgcactcttggatcatatt
gaattcaggtgaaatgctaattccccagagctcttctgtggagggaactg
ggagggaggtggcgttcatcaatgtagacctgtctacagaaccatctcga
gcagagcacaagggtaggttccggatccatctgctatgaacacgttattt
gaaggtacacattcactgcagaagaactccatgagcatcttttttttttt
tttatgagtaaatctttttttttaaagatttatttatttattatatgtaa
gtacactgtagctgtcttcagacactccagaagagggcatcagatcttgt
tacagatggttgtgagccaccatgtggttcctgggatttgaactccggac
cttcgaaagagcagtcgggtgctcttatccactgaaccatctcaccagcc
cctccatgagcatctgaagtgtgagtcaggaaaccggtgctttaccataa
tacccacacaaaatttcttttgggatggatgagaaccatgtacctgacca
atacgcaagtcccccccttccatccactgttgtccaagcacaagagaact
tgaggcgaaattcccacggtgtgctgagtgtcgggaaatcctcctgacca
agttcaggctgtttatacaagaggaacgatttgaatgaagtcaatatgaa
aagttgcatatgtgcaaacaccctgattgcaatgggataaaatcgtcttc
ggtgatcacccacacattagaggattctcgtgttctcgacttggggacgt
tccaatgtctgcagtcaaagtggacatggcttcagctggacttcatatca
aaaaagctcgtgcagggaagacacaacctaagccagaatccgtaacaaag
caaacaatatcactttgtttgctgaccagcatcttcgggaaaacaaatgt
aggagaaagacaggggtttttctacatgggaacttaggacaaaggtcatc
ataaaaggcagtttgcctgggggctaagataaggaatcacttggagggcc
agttccttcctctgaaaggcacttcggagacagagacacaggttgttgga
aaattatttttcagtgcattcacttggagtggtgggaatgagcttcgaac
tgaaagtgacttgatagatgtttggtttaacctggtattccatttttttt
ttatgctgcctgataaatccattgatcacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_5217469_5218612
seq2: B6Ng01-242K06.b_47_1186 (reverse)

seq1  AATATGAATCCAGAGTGGCATG-TCTATACCTAAGGGGCAGTGAGTGAGG  49
      |||||||  | ||||| ||||| ||||| |||| ||||||||||||||||
seq2  AATATGATCCAAGAGT-GCATGTTCTAT-CCTAGGGGGCAGTGAGTGAGG  48

seq1  CTGAAACTTGAACTCGCTATCAGTGAGCAGTCTCCCTGAAGTAGACCAGA  99
      ||| ||||  ||||||||||||||||||||||||| |||||||||||   
seq2  CTG-AACTGAAACTCGCTATCAGTGAGCAGTCTCCTTGAAGTAGACCCAG  97

seq1  ACACTAGACTGTGTAAGCTACACACAGGACAGGGACATAACTTGGCTCTG  149
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  ACACTAGACTGTGTAAGCTACACACA-GACAGGGACATAACTGGGCTCTG  146

seq1  CAAACATTTCCAACACGTTG-ACCAGTTCAAACTGGTTTGGGCTCATGAA  198
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  CAAACATTTCCAACACGTTGAACCAG-TCAAACTGGTTTGGGCTCATGAA  195

seq1  CACCTGAGTCAACAGCACCAAGAAAAACAGCTCAATTCTAGAGACTGAAG  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-CTGAGTCAACAGCACCAAGAAAAACAGCTCAATTCTAGAGACTGAAG  244

seq1  AAATGTCAGGGGGCTGACAGACCATCAAAGGAGGGGACACTTGCACAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCAGGGGGCTGACAGACCATCAAAGGAGGGGACACTTGCACAAAA  294

seq1  CAGGAGGACGAAGCTTTCTGAAAGCCAGTGAGATAGGGCAAAGCGGTGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGACGAAGCTTTCTGAAAGCCAGTGAGATAGGGCAAAGCGGTGTG  344

seq1  AGCTACAGAGGGGCATCAGCAACATAAAGAGCTAGTTGTCTTATGGGAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAGAGGGGCATCAGCAACATAAAGAGCTAGTTGTCTTATGGGAAG  394

seq1  TGTGGAAACAGAAACAGGAGTGAGGAGCAACTCTATGACAGTCCAGACCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAACAGAAACAGGAGTGAGGAGCAACTCTATGACAGTCCAGACCT  444

seq1  TTCCTCCCTTGGTCTGACAGGGACCTGGACTCTACAGAATGCTCAGAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCTTGGTCTGACAGGGACCTGGACTCTACAGAATGCTCAGAAGG  494

seq1  AAGAAATAATCTGACATCAAAGGGCTGGCTGTGACTAACAGTGACTGGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAATCTGACATCAAAGGGCTGGCTGTGACTAACAGTGACTGGGT  544

seq1  CTGCTCTTTCCACCTGGTGCTGTGGTGGATGCCTGCAGCCAGAGATGCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTTCCACCTGGTGCTGTGGTGGATGCCTGCAGCCAGAGATGCAG  594

seq1  ATGGCAGAATCATCCACACAAAGACCACAGTGGCTAGAGTTCAAAAGATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGAATCATCCACACAAAGACCACAGTGGCTAGAGTTCAAAAGATG  644

seq1  GAGGTGGGCTGAAAGCAAGCTGCAACAAACACAGCATATTAGAGGTGGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGCTGAAAGCAAGCTGCAACAAACACAGCATATTAGAGGTGGAG  694

seq1  AAAATAGAGCTTTGACTGGACCAGCTGGAGATGGTTTGAATGATCTATAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAGCTTTGACTGGACCAGCTGGAGATGGTTTGAATGATCTATAT  744

seq1  TAGTTTTCTGTACTAAAATGGTGAAGACAGATTTTTTTAATCACAAAATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCTGTACTAAAATGGTGAAGACAGATTTTTTTAATCACAAAATG  794

seq1  AGAACGCTTGATTTGTCAAAGAATGTCAAATTCACAGCCCATTATAATTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGCTTGATTTGTCAAAGAATGTCAAATTCACAGCCCATTATAATTG  844

seq1  TGGTAGTTTAACTTGTTCAATGCAGTAATGCTGGAAAACAACCCCCAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTTAACTTGTTCAATGCAGTAATGCTGGAAAACAACCCCCAAAT  894

seq1  TAAAAACCCTTTCTTCTAAGTTGTGATTGTACACATAAAAATAAGGAGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCCTTTCTTCTAAGTTGTGATTGTACACATAAAAATAAGGAGAG  944

seq1  AACTTTTGGTAAACAATTGGGCAACATATATTGGCTAATATGAAAAGGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTGGTAAACAATTGGGCAACATATATTGGCTAATATGAAAAGGAT  994

seq1  GCACATGAGGCCTGTGCATAGGCGTCATTCTATAGAATTCTTACACAAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGAGGCCTGTGCATAGGCGTCATTCTATAGAATTCTTACACAAGT  1044

seq1  ATTCAAACAATTGAGATTCACAGTGAAGTAACTGGTATTTTTCCTGTGTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAACAATTGAGATTCACAGTGAAGTAACTGGTATTTTTCCTGTGTG  1094

seq1  AGTCCAAAGTGTAACCATGATGCTTTAATGGTGTCTTCAAGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAAGTGTAACCATGATGCTTTAATGGTGTCTTCAAGAATTC  1140

seq1: chr6_5005341_5006479
seq2: B6Ng01-242K06.g_70_1250

seq1  GAATTCAGGTGAAATGCTAATTCCCCAGAGCTCTTCTGTGGAGGGAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGAAATGCTAATTCCCCAGAGCTCTTCTGTGGAGGGAACTG  50

seq1  GGAGGGAGGTGGCGTTCATCAATGTAGACCTGTCTACAGAACCATCTCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGGTGGCGTTCATCAATGTAGACCTGTCTACAGAACCATCTCGA  100

seq1  GCAGAGCACAAGGGTAGGTTCCGGATCCATCTGCTATGAACACGTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCACAAGGGTAGGTTCCGGATCCATCTGCTATGAACACGTTATTT  150

seq1  GAAGGTACACATTCACTGCAGAAGAACTCCATGAGCATCTTTTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTACACATTCACTGCAGAAGAACTCCATGAGCATCTTTTTTTTTTT  200

seq1  TTTATGAGTAAATCTTTTTTTTTAAAGATTTATTTATTTATTATATGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAGTAAATCTTTTTTTTTAAAGATTTATTTATTTATTATATGTAA  250

seq1  GTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTTGT  300

seq1  TACAGATGGTTGTGAGCCACCATGTGGTTCCTGGGATTTGAACTCCGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGTTGTGAGCCACCATGTGGTTCCTGGGATTTGAACTCCGGAC  350

seq1  CTTCGAAAGAGCAGTCGGGTGCTCTTATCCACTGAACCATCTCACCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAAAGAGCAGTCGGGTGCTCTTATCCACTGAACCATCTCACCAGCC  400

seq1  CCTCCATGAGCATCTGAAGTGTGAGTCAGGAAACCGGTGCTTTACCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGAGCATCTGAAGTGTGAGTCAGGAAACCGGTGCTTTACCATAA  450

seq1  TACCCACACAAAATTTCTTTTGGGATGGATGAGAACCATGTACCTGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACACAAAATTTCTTTTGGGATGGATGAGAACCATGTACCTGACCA  500

seq1  ATACGCAAGTCCCCCCCTTCCATCCACTGTTGTCCAAGCACAAGAGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGCAAGTCCCCCCCTTCCATCCACTGTTGTCCAAGCACAAGAGAACT  550

seq1  TGAGGCGAAATTCCCACGGTGTGCTGAGTGTCGGGAAATCCTCCTGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCGAAATTCCCACGGTGTGCTGAGTGTCGGGAAATCCTCCTGACCA  600

seq1  AGTTCAGGCTGTTTATACAAGAGGAACGATTTGAATGAAGTCAATATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGGCTGTTTATACAAGAGGAACGATTTGAATGAAGTCAATATGAA  650

seq1  AAGTTGCATATGTGCAAACACCCTGA-TGCAATGGGATAAAATCGTCTTC  699
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGTTGCATATGTGCAAACACCCTGATTGCAATGGGATAAAATCGTCTTC  700

seq1  GGTGATCACCCACACATTAGAGGATTCTCGTGTTCTCGACTTGGGGACGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATCACCCACACATTAGAGGATTCTCGTGTTCTCGACTTGGGGACGT  750

seq1  TCCAATGTCTGCAGTCAAAGTGGACATGGCTTCAGCTGGACTTCATATC-  798
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCAATGTCTGCAGTCAAAGTGGACATGGCTTCAGCTGGACTTCATATCA  800

seq1  AGAAAGCTCGTGCAGGGAAGACACAACCTAAGCCAGAATCCGTAACAAAG  848
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCTCGTGCAGGGAAGACACAACCTAAGCCAGAATCCGTAACAAAG  850

seq1  CAAAC-ATATCACTT--GTTGCTGA-CAGCATC-TCGG--AAACAAATGT  891
      ||||| |||||||||   ||||||| ||||||| ||||  ||||||||||
seq2  CAAACAATATCACTTTGTTTGCTGACCAGCATCTTCGGGAAAACAAATGT  900

seq1  AGGAGAAAGACAGGG--TTTTCTACATGG--ACTTAGGACAAA-GTCATC  936
      |||||||||||||||  ||||||||||||  |||||||||||| ||||||
seq2  AGGAGAAAGACAGGGGTTTTTCTACATGGGAACTTAGGACAAAGGTCATC  950

seq1  AT-AAAGGCAG-TTGC--TGGGGCTAAGATA--GGATCACT--GA-GGCC  977
      || |||||||| ||||   ||||||||||||  | ||||||  || ||||
seq2  ATAAAAGGCAGTTTGCCTGGGGGCTAAGATAAGGAATCACTTGGAGGGCC  1000

seq1  AGT--CCTCCTCTGAA--GCAC-TCGGAGAACAGAAAAACAACAGTTGTT  1022
      |||  | |||||||||  |||| |||||| ||||| | |||   ||||||
seq2  AGTTCCTTCCTCTGAAAGGCACTTCGGAG-ACAGAGACACA--GGTTGTT  1047

seq1  -GAAAATTA-TTTTCAGTGCATTCACTTGGA--TGTGTGGATGAGC-TCG  1067
       |||||||| |||||||||||||||||||||   ||| | |||||| |||
seq2  GGAAAATTATTTTTCAGTGCATTCACTTGGAGTGGTGGGAATGAGCTTCG  1097

seq1  -ACTGTAA-TGACCTG-TAGATGTT--GGTTAACCT-GTA-TCCA--TTT  1108
       |||| || |||| || ||||||||  | ||||||| ||| ||||  |||
seq2  AACTGAAAGTGACTTGATAGATGTTTGGTTTAACCTGGTATTCCATTTTT  1147

seq1  TTTTTATGCTG-CTGATAAATC--ATGATCACAA  1139
      ||||||||||| ||||||||||   |||||||||
seq2  TTTTTATGCTGCCTGATAAATCCATTGATCACAA  1181