BAC Information

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BAC

Clone NameB6Ng01-242K13
Chromosome6 (Build37)
Map Location 117,601,167 - 117,602,078
singlet/doubletsinglet
Overlap genenone
Upstream geneRassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
Downstream geneEG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242K13.bB6Ng01-242K13.g
ACCGA052245GA052246
length1,149915
definitionB6Ng01-242K13.b B6Ng01-242K13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctactgtggatccatctggccctttttcagctagaaggcttctta
ttactctttcgagcacctcattttttatgggttagcttagcttgttagct
tcttcttggtttaattttgatgctttcctgaatctagaaatttgctcatt
tcttttaggttttccaacttaatgtaatacaggttctttcaagtacttcc
ttatagtatttaaatgttttgtcttgtatattgtaatgtttccctgctca
tttctgtttctatttagttgaatcctctttttcctttggctaactgggcc
aaaggtctgttgattgtatttattttctcaaagaatcaactcttcgaaat
gttgattctttgtgtagttttctttgtctcaatctcactaatttctgcac
ttatttttattttgtcttgccctcaacaggatttggtttgttcttgtttt
tccaaatgttttacttacatcattaagtcatttatttgtgctctttcaga
ttttttaaatgtaagcactcaaagctataaatttcctttgtagactgttt
ataatgtgtcccagagatttgattgtgttgtgtttcaattttcacttagt
tccaggaattttttttttatttctactttgacccattcatcattcggcaa
tgaatcacttaatctccacgtgactgtaagtttactagagatttgttagc
tgccaattttaaattttattgtgttatagtccgataagataaacagagct
atttcactctttctagatttgtaagatttgtttcatgccccatgctttgc
tattgtagagaaactactgagtagaatgtatattctttggtgtttggata
ggatatagtgtagatatctgttaagtccatttgacgaatgatgtcattta
attctgatatgtctctgcttcagtttttccagataacctgtctattggac
aaagtaggtgttaaagtcacctactcagggttagggtttccttatatgtg
acttgtgcctttctttctcttttctggctttcaaagttctggctttctcc
tttcttgttctcatacttaaaattttaaccatggatatgctggtgaaaat
ttctcttccgatctgctggctggggactggaatgccataatcttggaca
gaattccccagttgcacttgaatagctgtgggcagtgtgtagttgctcag
ggagctcactgactttgcaaggaggaaagaagacaaaggcacagccagtt
ttcctgtggataaatcaaaacaaggacagtttgagagccaaggagggaga
aacatcatttcaacctctggctcctttgtcctccttggctctctggcatt
ggcttcatagtgcagttagggctgagacacaggaggtatggagactcctg
tcatgttgttgttcccttcaaccaggggaaaggctggctccagccagtgg
aagaacagatgcactctgctgagaaattcatacgtttgttttaacccttc
cgttaaagatgtgtgagagatgttcacagctcatggtgggcagctccagc
atgctgccttcccaagtggatcggacgggattggcattttgtactggacc
cttccccagggtttatgtcacttactgtcacttactgctgtcctgccagg
tgactcatcctaccacccgtgcttcttggatgaacaatcaggtacagagt
aagattttgtccagagtgacatggttgggagtcgggactcaaacccagga
gtctagacttcccgccctcagctctatcactgtatgaccagggttgatcc
catactgagctacatgaaggtgcactggtcactgacaccattgttaagtg
tatttatgtcaccatggccttgtaattaagagactgatttggtaccatca
aatgtgtctccttggtcctctttggctttgatgtgttcattgtaattcca
ataaaaatctggtggctctggggcctcaccatgaggcttgagggttttag
gttctgtgtgtctgtttttactgttgtgaacagtatgggggtacggggga
aatagggggaggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_117601167_117602078
seq2: B6Ng01-242K13.g_70_984 (reverse)

seq1  CCACCT-CCCCTA-TTCCCCCGTACCCCCATACTGTTCACAACAGT-AAA  47
      |||||| |||||| |||||||||||||||||||||||||||||||| |||
seq2  CCACCTCCCCCTATTTCCCCCGTACCCCCATACTGTTCACAACAGTAAAA  50

seq1  ACAGACACACAGAACCTAAAACCCTCAAGCCTCATGGTGAGGCCCCAGAG  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACACAGAACCTAAAACCCTCAAGCCTCATGGTGAGGCCCCAGAG  100

seq1  CCACCAGATTTTTATTGGAATTACAATGAACACATCAAAGCCAAAGAGGA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGATTTTTATTGGAATTACAATGAACACATCAAAGCCAAAGAGGA  150

seq1  CCAAGGAGACACATTTGATGGTACCAAATCAGTCTCTTAATTACAAGGCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGACACATTTGATGGTACCAAATCAGTCTCTTAATTACAAGGCC  200

seq1  ATGGTGACATAAATACACTTAACAATGGTGTCAGTGACCAGTGCACCTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGACATAAATACACTTAACAATGGTGTCAGTGACCAGTGCACCTTC  250

seq1  ATGTAGCTCAGTATGGGATCAACCCTGGTCATACAGTGATAGAGCTGAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTCAGTATGGGATCAACCCTGGTCATACAGTGATAGAGCTGAGG  300

seq1  GCGGGAAGTCTAGACTCCTGGGTTTGAGTCCCGACTCCCAACCATGTCAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAAGTCTAGACTCCTGGGTTTGAGTCCCGACTCCCAACCATGTCAC  350

seq1  TCTGGACAAAATCTTACTCTGTACCTGATTGTTCATCCAAGAAGCACGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACAAAATCTTACTCTGTACCTGATTGTTCATCCAAGAAGCACGGG  400

seq1  TGGTAGGATGAGTCACCTGGCAGGACAGCAGTAAGTGACAGTAAGTGACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGATGAGTCACCTGGCAGGACAGCAGTAAGTGACAGTAAGTGACA  450

seq1  TAAACCCTGGGGAAGGGTCCAGTACAAAATGCCAATCCCGTCCGATCCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCTGGGGAAGGGTCCAGTACAAAATGCCAATCCCGTCCGATCCAC  500

seq1  TTGGGAAGGCAGCATGCTGGAGCTGCCCACCATGAGCTGTGAACATCTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGGCAGCATGCTGGAGCTGCCCACCATGAGCTGTGAACATCTCT  550

seq1  CACACATCTTTAACGGAAGGGTTAAAACAAACGTATGAATTTCTCAGCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATCTTTAACGGAAGGGTTAAAACAAACGTATGAATTTCTCAGCAG  600

seq1  AGTGCATCTGTTCTTCCACTGGCTGGAGCCAGCCTTTCCCCTGGTTGAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATCTGTTCTTCCACTGGCTGGAGCCAGCCTTTCCCCTGGTTGAAG  650

seq1  GGAACAACAACATGACAGGAGTCTCCATACCTCCTGTGTCTCAGCCCTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAACAACATGACAGGAGTCTCCATACCTCCTGTGTCTCAGCCCTAA  700

seq1  CTGCACTATGAAGCCAATGCCAGAGAGCCAAGGAGGACAAAGGAGCCAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTATGAAGCCAATGCCAGAGAGCCAAGGAGGACAAAGGAGCCAGA  750

seq1  GGTTGAAATGATGTTTCTCCCTCCTTGGCTCTCAAACTGTCCTTGTTTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAATGATGTTTCTCCCTCCTTGGCTCTCAAACTGTCCTTGTTTTG  800

seq1  ATTTATCCACAGGAAAACTGGCTGTGCCTTTGTCTTCTTTCCTCCTTGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCCACAGGAAAACTGGCTGTGCCTTTGTCTTCTTTCCTCCTTGCA  850

seq1  AAGTCAGTGAGCTCCCTGAGCAACTACACACTGCCCACAGCTATTCAAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGTGAGCTCCCTGAGCAACTACACACTGCCCACAGCTATTCAAGT  900

seq1  GCAACTGGGGAATTC  912
      |||||||||||||||
seq2  GCAACTGGGGAATTC  915