BAC Information

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BAC

Clone NameB6Ng01-243G16
Chromosome6 (Build37)
Map Location 47,045,274 - 47,213,706
singlet/doubletdoublet
Overlap geneCntnap2, LOC100041064, LOC100041078
Upstream geneRbpsuh-rs3, LOC622745
Downstream geneA930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243G16.bB6Ng01-243G16.g
ACCGA052805GA052806
length1,1261,101
definitionB6Ng01-243G16.b B6Ng01-243G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,045,274 - 47,046,382)(47,212,615 - 47,213,706)
sequence
gaattcttccaaccttggcttcctgagtgctgggattaaagacatgcacc
tcccatattaagttttttacccctatttttgtcctaatcttacaggtttc
cttgttctggtacatgctttattttcaatagagtatttgtatcaataaca
acggttcacccaaattccaagcagagctagcataggactcaggcctctct
catcatttttcaaatttgtccttccttctctacagatgttggtgcctttt
ttgaagaaggcatgtggctgcgctataacttccaggccccagcggtcact
gccagagacacaggcagcagggccgagaattctgcagaccagcagcagca
cttggctccagatctggcccaggagcagatccactttagcttcagcacta
ccaaggcaccctgcatcctcctctatgtcagctccctcaccactgacttc
ctagctgttctggtcaagcccacaggtaagggcaagtatgcctagccttc
taccttcaaacggtagtcagacaaaagatgcaagagtcagaattgttctt
ggttgatggcttattccccgtgggatgctgggcaaagtacctgactcctt
tgaacctcgttgctatccagaatcagaagaacagcttgtcaactgagtgc
ttacaccaacaaattgatgtagtaatctcaggctctttttatattaagtg
aacacgggatggtttcacatgtataatgattcttctttttttttccattt
tttattagatatttagctcatttacatttccaatgctataccaaaagtcc
cccatacccacccacccccactcccctacccacccactcccccctttttg
gccctggcgttcccctgtactggggcatataaagtttgcgtgtccaatgg
gccttctcttttccagtgatggcccaactaggccatctttttgaatacat
tatgcagctagaagtcaagagctccgggggtactgggttagttcataatg
ttgttcacctatagggtttgcagatccctttatctccttggggaactttc
tctagctcctcaattggaagccctgtgaatcattccattagctgaattgt
gagcattccactttccgtaggtttgc
gaattcaaatcttgcaatattgccttgtgctctcgaagcctcagtggttc
atcacaaatacaaacattacaatactctggatagcattaaggagtaggac
caagagaaggactagtagtgctttgggaaaataaaagtatattctaccca
cattacaatattcttgactctaaattaattggtccattttcaaatggcac
taagagtctcttaagttaagggatactgacagaggacttatatttcagca
aagaattctatgacatctcttatgacagtcttgtgcccaagaaaaatgta
tgtgggttggcaccagtataagcagtatctcaaaggtatgtgtattagaa
gatgaacaatgggaataatttgtttgatgaataaaaatcatctctaatgg
aaaattttagagatacaaatacaaaactatatttaattattgggttgggt
aaaatattgtgctggctaattcaacttgataccagctagaattatctgag
aggagtgaaccccaaattagacaatgcctttataagattaggctataggc
ataccggtagagcattttcttaattagtgattcatgtcaaagagcccaac
ctattgtgggtggggtcatccctgggctggtgattctggattctagaaga
atgcaggctgagcaatccatgaggagcaagccagtaagcagcatacctct
atagtctctgcatcagcttctgccttgaggttcctgtactgtttgagttc
ctgtcctgatttcctttgatgatgaacagtgatatggaagtataagccat
gtaaaccctttcctcctctagctgctttggtcatgatgtttcatcacaga
tatagtaacccaaactaagactgatattaaaggtccattgggccagtatg
tcatatggtattttactagaaaggaggttggctatacagaaaataaaaag
agcatatgcccaaaaggatgttgaaaggccaaaattgatgggcttatatc
tactagataaatattagaagaaattgaataccttatttttatactttgga
aataacatacagttgccatcacaattggtatgacacattctattataaca
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47045274_47046382
seq2: B6Ng01-243G16.b_47_1172

seq1  GAATTCTTCCAACCTTGGCTTCCTGAGTGCTGGGATTAAAGACATGCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAACCTTGGCTTCCTGAGTGCTGGGATTAAAGACATGCACC  50

seq1  TCCCATATTAAGTTTTTTACCCCTATTTTTGTCCTAATCTTACAGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATATTAAGTTTTTTACCCCTATTTTTGTCCTAATCTTACAGGTTTC  100

seq1  CTTGTTCTGGTACATGCTTTATTTTCAATAGAGTATTTGTATCAATAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTGGTACATGCTTTATTTTCAATAGAGTATTTGTATCAATAACA  150

seq1  ACGGTTCACCCAAATTCCAAGCAGAGCTAGCATAGGACTCAGGCCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTCACCCAAATTCCAAGCAGAGCTAGCATAGGACTCAGGCCTCTCT  200

seq1  CATCATTTTTCAAATTTGTCCTTCCTTCTCTACAGATGTTGGTGCCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTTTCAAATTTGTCCTTCCTTCTCTACAGATGTTGGTGCCTTTT  250

seq1  TTGAAGAAGGCATGTGGCTGCGCTATAACTTCCAGGCCCCAGCGGTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAGGCATGTGGCTGCGCTATAACTTCCAGGCCCCAGCGGTCACT  300

seq1  GCCAGAGACACAGGCAGCAGGGCCGAGAATTCTGCAGACCAGCAGCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGACACAGGCAGCAGGGCCGAGAATTCTGCAGACCAGCAGCAGCA  350

seq1  CTTGGCTCCAGATCTGGCCCAGGAGCAGATCCACTTTAGCTTCAGCACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCCAGATCTGGCCCAGGAGCAGATCCACTTTAGCTTCAGCACTA  400

seq1  CCAAGGCACCCTGCATCCTCCTCTATGTCAGCTCCCTCACCACTGACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCACCCTGCATCCTCCTCTATGTCAGCTCCCTCACCACTGACTTC  450

seq1  CTAGCTGTTCTGGTCAAGCCCACAGGTAAGGGCAAGTATGCCTAGCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGTTCTGGTCAAGCCCACAGGTAAGGGCAAGTATGCCTAGCCTTC  500

seq1  TACCTTCAAACGGTAGTCAGACAAAAGATGCAAGAGTCAGAATTGTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCAAACGGTAGTCAGACAAAAGATGCAAGAGTCAGAATTGTTCTT  550

seq1  GGTTGATGGCTTATTCCCCGTGGGATGCTGGGCAAAGTACCTGACTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATGGCTTATTCCCCGTGGGATGCTGGGCAAAGTACCTGACTCCTT  600

seq1  TGAACCTCGTTGCTATCCAGAATCAGAAGAACAGCTTGTCAACTGAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTCGTTGCTATCCAGAATCAGAAGAACAGCTTGTCAACTGAGTGC  650

seq1  TTACACCAACAAATTGATGTAGTAATCTCAGGCTCTTTTTATATTAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCAACAAATTGATGTAGTAATCTCAGGCTCTTTTTATATTAAGTG  700

seq1  AACACGGGATGGTTTCACATGTATAATGATTCTTCTTTTTTTTTCCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGGGATGGTTTCACATGTATAATGATTCTTCTTTTTTTTTCCATTT  750

seq1  TTTATTAGATATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGATATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCC  800

seq1  CCCATACCCACCCACCCCCACTCCCCTACCCACCCACT-CCCCCTTTTTG  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCCATACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCCTTTTTG  850

seq1  GCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGG  900

seq1  GCC-TCTC-TTTCCAGTGATGG-CCAACTAGGCCATCTTTT--GATACA-  943
      ||| |||| ||||||||||||| ||||||||||||||||||   ||||| 
seq2  GCCTTCTCTTTTCCAGTGATGGCCCAACTAGGCCATCTTTTTGAATACAT  950

seq1  TATGCAGCTAG-AGTCAAGAGCTCC-GGGGTACT-GGTTAGTTCATAATG  990
      ||||||||||| ||||||||||||| |||||||| |||||||||||||||
seq2  TATGCAGCTAGAAGTCAAGAGCTCCGGGGGTACTGGGTTAGTTCATAATG  1000

seq1  TTGTTCCACCTATAGGG-TTGCAGATCCCTTTAGCTCCTT-GGGTACTTT  1038
      ||||| ||||||||||| ||||||||||||||| |||||| ||| |||||
seq2  TTGTT-CACCTATAGGGTTTGCAGATCCCTTTATCTCCTTGGGGAACTTT  1049

seq1  CTCTAGCTCCTCCATTGGGAGCCCTGTG-ATCCATCCATTAGCTG-ACTG  1086
      |||||||||||| ||||| ||||||||| |||  ||||||||||| | ||
seq2  CTCTAGCTCCTCAATTGGAAGCCCTGTGAATCATTCCATTAGCTGAATTG  1099

seq1  TGAGCA-TCCAC-TTCCGT--GTTTGC  1109
      |||||| ||||| ||||||  ||||||
seq2  TGAGCATTCCACTTTCCGTAGGTTTGC  1126

seq1: chr6_47212615_47213706
seq2: B6Ng01-243G16.g_66_1166 (reverse)

seq1  ATGTTATTAATAG-ATGTGTCATACCATTTGGTGATGGC-ACTGTATGTT  48
      |||||| |||||| ||||||||||||| || |||||||| ||||||||||
seq2  ATGTTA-TAATAGAATGTGTCATACCAATT-GTGATGGCAACTGTATGTT  48

seq1  ATTTCC-AAGTATAAAAATTAGGTATTC-ATTTCTTCTAATATTTATCTA  96
      |||||| |||||||||||| |||||||| |||||||||||||||||||||
seq2  ATTTCCAAAGTATAAAAATAAGGTATTCAATTTCTTCTAATATTTATCTA  98

seq1  GTTAGATATAAG-CCATC-ATTTTGGCCTTTCAACATCCTTTT-GGCATA  143
      | |||||||||| ||||| |||||||||||||||||||||||| ||||||
seq2  G-TAGATATAAGCCCATCAATTTTGGCCTTTCAACATCCTTTTGGGCATA  147

seq1  TGCTCTTTTTATTTTCTGTATAGCC-ACCT-CTTTCTAGT-AAATACCAT  190
      ||||||||||||||||||||||||| |||| ||||||||| |||||||||
seq2  TGCTCTTTTTATTTTCTGTATAGCCAACCTCCTTTCTAGTAAAATACCAT  197

seq1  ATGACATACTGG-CCAATGGACC-TTAATATCAGTCTTAGTTTGGGTTAC  238
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  ATGACATACTGGCCCAATGGACCTTTAATATCAGTCTTAGTTTGGGTTAC  247

seq1  TATATCTGTGATGAAACATCATGACCAAAGCAGCTAGAGGAGGAAAGGGT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGTGATGAAACATCATGACCAAAGCAGCTAGAGGAGGAAAGGGT  297

seq1  TTACATGGCTTATACTTCCATATCACTGTTCATCATCAAAGGAAATCAGG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGGCTTATACTTCCATATCACTGTTCATCATCAAAGGAAATCAGG  347

seq1  ACAGGAACTCAAACAGTACAGGAACCTCAAGGCAGAAGCTGATGCAGAGA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACTCAAACAGTACAGGAACCTCAAGGCAGAAGCTGATGCAGAGA  397

seq1  CTATAGAGGTATGCTGCTTACTGGCTTGCTCCTCATGGATTGCTCAGCCT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAGGTATGCTGCTTACTGGCTTGCTCCTCATGGATTGCTCAGCCT  447

seq1  GCATTCTTCTAGAATCCAGAATCACCAGCCCAGGGATGACCCCACCCACA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTCTAGAATCCAGAATCACCAGCCCAGGGATGACCCCACCCACA  497

seq1  ATAGGTTGGGCTCTTTGACATGAATCACTAATTAAGAAAATGCTCTACCG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTGGGCTCTTTGACATGAATCACTAATTAAGAAAATGCTCTACCG  547

seq1  GTATGCCTATAGCCTAATCTTATAAAGGCATTGTCTAATTTGGGGTTCAC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCCTATAGCCTAATCTTATAAAGGCATTGTCTAATTTGGGGTTCAC  597

seq1  TCCTCTCAGATAATTCTAGCTGGTATCAAGTTGAATTAGCCAGCACAATA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCAGATAATTCTAGCTGGTATCAAGTTGAATTAGCCAGCACAATA  647

seq1  TTTTACCCAACCCAATAATTAAATATAGTTTTGTATTTGTATCTCTAAAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCCAACCCAATAATTAAATATAGTTTTGTATTTGTATCTCTAAAA  697

seq1  TTTTCCATTAGAGATGATTTTTATTCATCAAACAAATTATTCCCATTGTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTAGAGATGATTTTTATTCATCAAACAAATTATTCCCATTGTT  747

seq1  CATCTTCTAATACACATACCTTTGAGATACTGCTTATACTGGTGCCAACC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTAATACACATACCTTTGAGATACTGCTTATACTGGTGCCAACC  797

seq1  CACATACATTTTTCTTGGGCACAAGACTGTCATAAGAGATGTCATAGAAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATTTTTCTTGGGCACAAGACTGTCATAAGAGATGTCATAGAAT  847

seq1  TCTTTGCTGAAATATAAGTCCTCTGTCAGTATCCCTTAACTTAAGAGACT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTGAAATATAAGTCCTCTGTCAGTATCCCTTAACTTAAGAGACT  897

seq1  CTTAGTGCCATTTGAAAATGGACCAATTAATTTAGAGTCAAGAATATTGT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGCCATTTGAAAATGGACCAATTAATTTAGAGTCAAGAATATTGT  947

seq1  AATGTGGGTAGAATATACTTTTATTTTCCCAAAGCACTACTAGTCCTTCT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGGTAGAATATACTTTTATTTTCCCAAAGCACTACTAGTCCTTCT  997

seq1  CTTGGTCCTACTCCTTAATGCTATCCAGAGTATTGTAATGTTTGTATTTG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCCTACTCCTTAATGCTATCCAGAGTATTGTAATGTTTGTATTTG  1047

seq1  TGATGAACCACTGAGGCTTCGAGAGCACAAGGCAATATTGCAAGATTTGA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAACCACTGAGGCTTCGAGAGCACAAGGCAATATTGCAAGATTTGA  1097

seq1  ATTC  1092
      ||||
seq2  ATTC  1101