BAC Information

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BAC

Clone NameB6Ng01-243G24
Chromosome6 (Build37)
Map Location 27,776,604 - 27,965,411
singlet/doubletdoublet
Overlap geneGrm8
Upstream geneLOC100041247
Downstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243G24.bB6Ng01-243G24.g
ACCGA052821GA052822
length1,1521,112
definitionB6Ng01-243G24.b B6Ng01-243G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,776,604 - 27,777,752)(27,964,312 - 27,965,411)
sequence
gaattccctgtaatcccttaataataattactgtcaggctttagaatgag
ggaagcttacagaagtttctagtcatattttacacattttgttttttcat
ttcaactcagaataaatggcaaaagaactggagtgaaagaacggagataa
gcggaaacaaaaaaaaatagagaaatgaaggaaaggtatatatgtaaatt
aaaaacacacttattaccagcccttgaagcaaaagaattgacagtgacct
ctagtaagatatctctgtggagagtctggttttcagtgccttcccaagat
tacctgggtctggataacagccagcatttaaacctctctcagaagcatcc
tatcttcctcctccaccttcccttcctccagaagcctcttcagaacccat
caacaccaatacaaaggcttgaaaatggcattttcctcttggctgaatgc
aaaaaccagaagtacagaaacgttctgcccactgatggtttgaatcacta
tgaactcattcttcctgtcagctagcagcatcgaaaaaaaaaaaaaaaat
aaatgaagaaataaataattaattaataaataaataggggctccagatgt
ccaggcacaaccagcacattccacacattgttccctacattcaagcagcc
agaatctaccttaaagtttcattttctttgtaactagtattcataggtat
ttggggaatttctatagacgcaaatgagttctctttctccatctgttctc
aggagattaattattcctgccaattcaagtaggtcctcctgttaacacat
cccaatggaccttttttcttcacaatcaaaaaaagtacagattccaacat
tttaataatattttgttctgtttttacattgctagttaattgtgcagtct
ctaaagagctttctacttctttctaatttccttaataagaaatattctga
taactttgtcaacttcacaaacacacactaaattttttcttggagttaga
gaaggttttttcacaataatggaaaatgtgttccacctggaatttctcat
ttttattttatggaaagtaatttacgggcctgggggagatggcttctctt
caggtgaatgctggcatgtaaggccatcagacctgattggatccttagta
aa

gaattccagataggctcacagagttttagcttcctatgccctgggaataa
aatctttcactgagtgcaatttggatttactgagaagtttagttttctgg
caagctgtcccatggtttgtgttgatgaggaatgaaatttttaggacttt
agcgcaagtgtttgggaatttagtttttgattattctgaatacacacctt
gcatgagtattttttttttgagtttatgaagcgatgcttaaagatacatt
aaagaccaaagagtttgttttgttatccagcatattgctttctcaaagat
atggaatccttactttgatgaggggaaagtgtttcaaaggaaatgaatat
cttttcagaaattcaagctattagctaatagctacagcagggagtgttaa
atagaagtgttaagtcttgtttatacctccactgagaggataatagcttt
ttgcttataccttcaattgtatagatttattaaaaatgtcaggatgtgaa
actgttgacttaactgggttcctgtaatgaaatacatgatgcatgaaatt
ctgacacacttacgggcctgcacacgcatcatttattctttaagaagaaa
caatttcagtttaccagtaaagaaggcattcctttgaagttagagaatta
gtattgctaatgacattatttggggccttaattcatgtgttgattttttt
ctcctgtcaattttcttcccgtgtactcagatattagtgattgttcattc
ctttgctgggtcttctgcagtgggagttgatatccacatgctgattggga
acaaacaaattctgaataccaatgtggaagaaatagtgtacgcagcaggg
aaaacttcctgctttttttcaagaggagatatagagtgtcacagaaaaga
catggtcattagaatttgaccattcttgcttctgcccatactattccttc
atcatgagctatttatcatcaatagatttatctaacttctttgagtattc
gttttcttattccacaaaaggcaagaatatgatgcagacagtgaatggtt
gcattgtaaaagagcctcacaaagatttccctgaaaatgataagtagtta
ttgctggctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_27776604_27777752
seq2: B6Ng01-243G24.b_46_1197

seq1  GAATTCCCTGTAATCCCTTAATAATAATTACTGTCAGGCTTTAGAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTAATCCCTTAATAATAATTACTGTCAGGCTTTAGAATGAG  50

seq1  GGAAGCTTACAGAAGTTTCTAGTCATATTTTACACATTTTGTTTTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTTACAGAAGTTTCTAGTCATATTTTACACATTTTGTTTTTTCAT  100

seq1  TTCAACTCAGAATAAATGGCAAAAGAACTGGAGTGAAAGAACGGAGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTCAGAATAAATGGCAAAAGAACTGGAGTGAAAGAACGGAGATAA  150

seq1  GCGGAAACAAAAAAAAATAGAGAAATGAAGGAAAGGTATATATGTAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAAACAAAAAAAAATAGAGAAATGAAGGAAAGGTATATATGTAAATT  200

seq1  AAAAACACACTTATTACCAGCCCTTGAAGCAAAAGAATTGACAGTGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACACTTATTACCAGCCCTTGAAGCAAAAGAATTGACAGTGACCT  250

seq1  CTAGTAAGATATCTCTGTGGAGAGTCTGGTTTTCAGTGCCTTCCCAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAGATATCTCTGTGGAGAGTCTGGTTTTCAGTGCCTTCCCAAGAT  300

seq1  TACCTGGGTCTGGATAACAGCCAGCATTTAAACCTCTCTCAGAAGCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGTCTGGATAACAGCCAGCATTTAAACCTCTCTCAGAAGCATCC  350

seq1  TATCTTCCTCCTCCACCTTCCCTTCCTCCAGAAGCCTCTTCAGAACCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCCTCCTCCACCTTCCCTTCCTCCAGAAGCCTCTTCAGAACCCAT  400

seq1  CAACACCAATACAAAGGCTTGAAAATGGCATTTTCCTCTTGGCTGAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCAATACAAAGGCTTGAAAATGGCATTTTCCTCTTGGCTGAATGC  450

seq1  AAAAACCAGAAGTACAGAAACGTTCTGCCCACTGATGGTTTGAATCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAGAAGTACAGAAACGTTCTGCCCACTGATGGTTTGAATCACTA  500

seq1  TGAACTCATTCTTCCTGTCAGCTAGCAGCATCGAAAAAAAAAAAAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCATTCTTCCTGTCAGCTAGCAGCATCGAAAAAAAAAAAAAAAAT  550

seq1  AAATGAAGAAATAAATAATTAATTAATAAATAAATAGGGGCTCCAGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGAAATAAATAATTAATTAATAAATAAATAGGGGCTCCAGATGT  600

seq1  CCAGGCACAACCAGCACATTCCACACATTGTTCCCTACATTCAAGCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCACAACCAGCACATTCCACACATTGTTCCCTACATTCAAGCAGCC  650

seq1  AGAATCTACCTTAAAGTTTCATTTTCTTTGTAACTAGTATTCATAGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTACCTTAAAGTTTCATTTTCTTTGTAACTAGTATTCATAGGTAT  700

seq1  TTGGGGAATTTCTATAGACGCAAATGAGTTCTCTTTCTCCATCTGTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAATTTCTATAGACGCAAATGAGTTCTCTTTCTCCATCTGTTCTC  750

seq1  AGGAGATTAATTATTCCTGCCAATTCAAGTAGGTCCTCCTGTTAACACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATTAATTATTCCTGCCAATTCAAGTAGGTCCTCCTGTTAACACAT  800

seq1  CCCAATGGACCTTTTTTCTTCACAATCAAAAAAAGTACAGATTCCAACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGGACCTTTTTTCTTCACAATCAAAAAAAGTACAGATTCCAACAT  850

seq1  TTTAATAATATTTTGTTCTGTTTTTACATTGCTAGTTAATTGTGCAGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAATATTTTGTTCTGTTTTTACATTGCTAGTTAATTGTGCAGTCT  900

seq1  CTAAAGAGCTTTCTACTTCTTTCTAATTTCCTTAATAAGAAATATTCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGCTTTCTACTTCTTTCTAATTTCCTTAATAAGAAATATTCTGA  950

seq1  TAACTTTGTCAACTTCACAAACACACACTAA--TTTTTCTTGGAGTTAGA  998
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  TAACTTTGTCAACTTCACAAACACACACTAAATTTTTTCTTGGAGTTAGA  1000

seq1  GAAGGTTTTTTCCACAATTAATGGAAATTGTGTTCAACCTG--AATTCTC  1046
      ||||||||||| ||||| ||||||||| ||||||| |||||  | |||||
seq2  GAAGGTTTTTT-CACAA-TAATGGAAAATGTGTTCCACCTGGAATTTCTC  1048

seq1  ATTTTTAATTTTTAT-GAAAGTAATTTAAGGGGCT-GGGGAGATGGC-TC  1093
      |||||||  |||||| |||||||||||| ||| || ||||||||||| ||
seq2  ATTTTTA--TTTTATGGAAAGTAATTTACGGGCCTGGGGGAGATGGCTTC  1096

seq1  TC-TCA-GTGAATGCTTGCCATGTTAGCACA-CAGACCTGAGTTTGATCC  1140
      || ||| |||||||| || ||||| ||  || ||||||||| || |||||
seq2  TCTTCAGGTGAATGC-TGGCATGTAAGGCCATCAGACCTGA-TTGGATCC  1144

seq1  TTAGGTAAA  1149
      ||| |||||
seq2  TTA-GTAAA  1152


seq1: chr6_27964312_27965411
seq2: B6Ng01-243G24.g_67_1178 (reverse)

seq1  AATAG-CAGCAATAACTAC-TATCA-TTTCAGGGAAATC-TTGTGAAGCT  46
      ||||| ||||||||||||| ||||| ||||||||||||| |||||| |||
seq2  AATAGCCAGCAATAACTACTTATCATTTTCAGGGAAATCTTTGTGAGGCT  50

seq1  C-TTTAC-ATGC-ACCA-TCACTGTCTGCATCCATAT--CTGCCTTTTGT  90
      | ||||| |||| |||| ||||||||||||| |||||   ||||||||||
seq2  CTTTTACAATGCAACCATTCACTGTCTGCAT-CATATTCTTGCCTTTTGT  99

seq1  GG-ATAAGAAAACGAATACTC-AAGAAGTTAGATAAATCTATTGATGATA  138
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGAATAAGAAAACGAATACTCAAAGAAGTTAGATAAATCTATTGATGATA  149

seq1  AATAGCTCATGATGAAGGAATAGTATGGGCAGAAGCAAGAATGGTCAAAT  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTCATGATGAAGGAATAGTATGGGCAGAAGCAAGAATGGTCAAAT  199

seq1  TCTAATGACCATGTCTTTTCTGTGACACTCTATATCTCCTCTTG-AAAAA  237
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTAATGACCATGTCTTTTCTGTGACACTCTATATCTCCTCTTGAAAAAA  249

seq1  AGCAGGAAGTTTTCCCTGCTGCGTACACTATTTCTTCCACATTGGTATTC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAGTTTTCCCTGCTGCGTACACTATTTCTTCCACATTGGTATTC  299

seq1  AGAATTTGTTTGTTCCCAATCAGCATGTGGATATCAACTCCCACTGCAGA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGTTTGTTCCCAATCAGCATGTGGATATCAACTCCCACTGCAGA  349

seq1  AGACCCAGCAAAGGAATGAACAATCACTAATATCTGAGTACACGGGAAGA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGCAAAGGAATGAACAATCACTAATATCTGAGTACACGGGAAGA  399

seq1  AAATTGACAGGAGAAAAAAATCAACACATGAATTAAGGCCCCAAATAATG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGACAGGAGAAAAAAATCAACACATGAATTAAGGCCCCAAATAATG  449

seq1  TCATTAGCAATACTAATTCTCTAACTTCAAAGGAATGCCTTCTTTACTGG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGCAATACTAATTCTCTAACTTCAAAGGAATGCCTTCTTTACTGG  499

seq1  TAAACTGAAATTGTTTCTTCTTAAAGAATAAATGATGCGTGTGCAGGCCC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGAAATTGTTTCTTCTTAAAGAATAAATGATGCGTGTGCAGGCCC  549

seq1  GTAAGTGTGTCAGAATTTCATGCATCATGTATTTCATTACAGGAACCCAG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGTGTCAGAATTTCATGCATCATGTATTTCATTACAGGAACCCAG  599

seq1  TTAAGTCAACAGTTTCACATCCTGACATTTTTAATAAATCTATACAATTG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCAACAGTTTCACATCCTGACATTTTTAATAAATCTATACAATTG  649

seq1  AAGGTATAAGCAAAAAGCTATTATCCTCTCAGTGGAGGTATAAACAAGAC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATAAGCAAAAAGCTATTATCCTCTCAGTGGAGGTATAAACAAGAC  699

seq1  TTAACACTTCTATTTAACACTCCCTGCTGTAGCTATTAGCTAATAGCTTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACTTCTATTTAACACTCCCTGCTGTAGCTATTAGCTAATAGCTTG  749

seq1  AATTTCTGAAAAGATATTCATTTCCTTTGAAACACTTTCCCCTCATCAAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGAAAAGATATTCATTTCCTTTGAAACACTTTCCCCTCATCAAA  799

seq1  GTAAGGATTCCATATCTTTGAGAAAGCAATATGCTGGATAACAAAACAAA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGATTCCATATCTTTGAGAAAGCAATATGCTGGATAACAAAACAAA  849

seq1  CTCTTTGGTCTTTAATGTATCTTTAAGCATCGCTTCATAAACTCAAAAAA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGGTCTTTAATGTATCTTTAAGCATCGCTTCATAAACTCAAAAAA  899

seq1  AAAATACTCATGCAAGGTGTGTATTCAGAATAATCAAAAACTAAATTCCC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTCATGCAAGGTGTGTATTCAGAATAATCAAAAACTAAATTCCC  949

seq1  AAACACTTGCGCTAAAGTCCTAAAAATTTCATTCCTCATCAACACAAACC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTGCGCTAAAGTCCTAAAAATTTCATTCCTCATCAACACAAACC  999

seq1  ATGGGACAGCTTGCCAGAAAACTAAACTTCTCAGTAAATCCAAATTGCAC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACAGCTTGCCAGAAAACTAAACTTCTCAGTAAATCCAAATTGCAC  1049

seq1  TCAGTGAAAGATTTTATTCCCAGGGCATAGGAAGCTAAAACTCTGTGAGC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAAAGATTTTATTCCCAGGGCATAGGAAGCTAAAACTCTGTGAGC  1099

seq1  CTATCTGGAATTC  1100
      |||||||||||||
seq2  CTATCTGGAATTC  1112


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