BAC Information

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BAC

Clone NameB6Ng01-243H21
Chromosome6 (Build37)
Map Location 109,589,584 - 109,697,203
singlet/doubletdoublet
Overlap genenone
Upstream geneBhlhb2, Arl8b, Edem1, EG627371, LOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243H21.bB6Ng01-243H21.g
ACCGA052862GA052863
length7171,154
definitionB6Ng01-243H21.b B6Ng01-243H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,589,584 - 109,590,298)(109,696,049 - 109,697,203)
sequence
gaattcttaatcctccagaattctgttcagaaggtctgagattacatcca
acatattttatttattgagaatctatttggtcacatatattgtcaatcta
agacccctataagtatttaatgtatataaataacttaaaaatatgttccc
tccaattaatgggtgaataatgagcaataattaatcaatgacactattgg
acaattataggcaatttagagaagtcagactggggacaggggagatggtt
cagtgggcaaaatgcttcaggtggttgctttggaagttcagatctaagtt
cagatctctagaagccatgtaagagaaataaaagcacgatgcagtggtac
ctgtgaccctaacagtgagaaatagacacataattcttcaggctatctgg
gtggccagcctagctgatatgacaaagtccatatcccgtgagagatatct
tataaaataaggcagagaagaaactgaagaagacattttcacgtcaatat
ctgctctccccttgggcgcagattggtgattttatttttagacatgttgt
aattttctcgtgaagagtaagatgaacaaaaggaagcttagtatctaaat
acgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcatgtga
gcatatgttatgtggttcacatatgtgtatgagtgttaagcattctcata
tgcatgtctaatatgca

gaattcatgtttattctcacaaaattaatgcaggtctccttccacctgga
caccgtatgactgaaattgatagaaagattaaagggaaaaggagggaggg
agaaaaaaagggagaagaggaaaatagcatagggagaaatagctctcatt
gttcaccctaccatgcaatcaacctttagtgattaacattgtctttctct
taaggaacaaatgagtagaaccaacaggtacattattttggggtgttcaa
ttagatttctcttgctcaaattgctattacgtatgtctcattctaagtaa
ttttaaagaagtaaacaataaaatttgaacaaaaatcgatttttgctatg
tccttgtaattctttaaaatgttctattgttatttccaataatttgcata
gtttctaatgcatgtcattgaaaaatatttataaattttaataatttatt
ttaattacagatttgaaaacacataactgctttaggaaaatgccattgca
gctccctttaaaaatatagataacgaaagcatgagccactttaaagaata
atattacctttataatagtaaataatatctgcaaaaatattagtaatttt
ggtgctgttatgtaaatgagtctattggaaataagggaaggaaagataag
aactgtaaaatagtaatcacttttagataatttctttatgtattctctgc
tgctataatgaaatgcctgaggctagactctctgtaaaggaaaaaaaaac
tgtttattgagctcatttctagaagctgaaaagtatggcgccaacttctg
tttgtccttggtgacgccttcttgtatcacaccatggtggcttgcttcaa
ggtaggaatatgtgagagggatttgaaaagtgctagattgccgtgtgttg
tctgatactcaagtgccttctgagcctgtactccatgagctacttgctct
ccatcatctcaatttttaaagattcaacttcttcaattattgtcacagta
gaaactgagaattttcacttcatgaaaatcttgagaaaatcttggacagt
tacaaaacaacgtttaagtcaaaaccttagaagatagcaaggaacatgac
acagaataagagaattcagtccagtcttctaagctaatgagggttgatga
catg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_109589584_109590298
seq2: B6Ng01-243H21.b_45_761

seq1  GAATTCTTAATCCTCCAGAATTCTGTTCAGAAGGTCTGAGATTACATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATCCTCCAGAATTCTGTTCAGAAGGTCTGAGATTACATCCA  50

seq1  ACATATTTTATTTATTGAGAATCTATTTGGTCACATATATTGTCAATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTATTTATTGAGAATCTATTTGGTCACATATATTGTCAATCTA  100

seq1  AGACCCCTATAAGTATTTAATGTATATAAATAACTTAAAAATATGTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCTATAAGTATTTAATGTATATAAATAACTTAAAAATATGTTCCC  150

seq1  TCCAATTAATGGGTGAATAATGAGCAATAATTAATCAATGACACTATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTAATGGGTGAATAATGAGCAATAATTAATCAATGACACTATTGG  200

seq1  ACAATTATAGGCAATTTAGAGAAGTCAGACTGGGGACAGGGGAGATGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTATAGGCAATTTAGAGAAGTCAGACTGGGGACAGGGGAGATGGTT  250

seq1  CAGTGGGCAAAATGCTTCAGGTGGTTGCTTTGGAAGTTCAGATCTAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGCAAAATGCTTCAGGTGGTTGCTTTGGAAGTTCAGATCTAAGTT  300

seq1  CAGATCTCTAGAAGCCATGTAAGAGAAATAAAAGCACGATGCAGTGGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCTAGAAGCCATGTAAGAGAAATAAAAGCACGATGCAGTGGTAC  350

seq1  CTGTGACCCTAACAGTGAGAAATAGACACATAATTCTTCAGGCTATCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACCCTAACAGTGAGAAATAGACACATAATTCTTCAGGCTATCTGG  400

seq1  GTGGCCAGCCTAGCTGATATGACAAAGTCCATATCCCGTGAGAGATATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCAGCCTAGCTGATATGACAAAGTCCATATCCCGTGAGAGATATCT  450

seq1  TATAAAATAAGGCAGAGAAGAAACTGAAGAAGACATTTTCACGTCAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATAAGGCAGAGAAGAAACTGAAGAAGACATTTTCACGTCAATAT  500

seq1  CTGCTCTCCCCTTGGGCGCAGATTGGTGATTTTATTTTTAGACATGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCCCCTTGGGCGCAGATTGGTGATTTTATTTTTAGACATGTTGT  550

seq1  AATTTTCTCGTGAAGAGTAAGATGAACAAAAGGAAGCTTAGTATCTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTCGTGAAGAGTAAGATGAACAAAAGGAAGCTTAGTATCTAAAT  600

seq1  ACGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCATGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCATGTGA  650

seq1  GCATATGTTATGTGGTTCACATATGTGTATGAATG-TAAGCATACTCATA  699
      |||||||||||||||||||||||||||||||| || ||||||| ||||||
seq2  GCATATGTTATGTGGTTCACATATGTGTATGAGTGTTAAGCATTCTCATA  700

seq1  TGCATGT-AAATATGCA  715
      |||||||  ||||||||
seq2  TGCATGTCTAATATGCA  717


seq1: chr6_109696049_109697203
seq2: B6Ng01-243H21.g_65_1218 (reverse)

seq1  CATGTCATTCAACCTCATTAGCTTAGAGAGACTTGGCTGAATCTCCTTTT  50
      ||||||||  | ||||||||||||||| ||||| | |||||| ||  || 
seq2  CATGTCATCAACCCTCATTAGCTTAGA-AGACTGGACTGAAT-TCTCTTA  48

seq1  ATCTGTGTCCATGTTCCTTGCTATC-TCTAAGTTTTTGGCTTAACGTTTG  99
       ||||||| |||||||||||||||| |||||| ||||| |||||   |||
seq2  TTCTGTGT-CATGTTCCTTGCTATCTTCTAAGGTTTTGACTTAAACGTTG  97

seq1  TTTTTGTAACTGTCCCAGATTTTCTCCAGATTTTCATGAAGTGAAAA-TC  148
       |||||||||||||| |||||||||| |||||||||||||||||||| ||
seq2  -TTTTGTAACTGTCCAAGATTTTCTCAAGATTTTCATGAAGTGAAAATTC  146

seq1  TCAGTTTCTACTGTGACAAT-ATTGAAGAGTTTGAATCTTTAAAAATGGA  197
      |||||||||||||||||||| ||||||||  |||||||||||||||| ||
seq2  TCAGTTTCTACTGTGACAATAATTGAAGAAGTTGAATCTTTAAAAATTGA  196

seq1  GATGATGGAGAGCAAGTAGCTCATGGAGTACAGGCTCAGAAGGCACTTGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGGAGAGCAAGTAGCTCATGGAGTACAGGCTCAGAAGGCACTTGA  246

seq1  GTATCAGACAACACACGGCAATCTAGCACTTTTCAAATCCCTCTCACATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGACAACACACGGCAATCTAGCACTTTTCAAATCCCTCTCACATA  296

seq1  TTCCTACCTTGAAGCAAGCCACCATGGTGTGATACAAGAAGGCGTCACCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACCTTGAAGCAAGCCACCATGGTGTGATACAAGAAGGCGTCACCA  346

seq1  AGGACAAACAGAAGTTGGCGCCATACTTTTCAGCTTCTAGAAATGAGCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAACAGAAGTTGGCGCCATACTTTTCAGCTTCTAGAAATGAGCTC  396

seq1  AATAAACAGTTTTTTTTTCCTTTACAGAGAGTCTAGCCTCAGGCATTTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAGTTTTTTTTTCCTTTACAGAGAGTCTAGCCTCAGGCATTTCA  446

seq1  TTATAGCAGCAGAGAATACATAAAGAAATTATCTAAAAGTGATTACTATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCAGCAGAGAATACATAAAGAAATTATCTAAAAGTGATTACTATT  496

seq1  TTACAGTTCTTATCTTTCCTTCCCTTATTTCCAATAGACTCATTTACATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTCTTATCTTTCCTTCCCTTATTTCCAATAGACTCATTTACATA  546

seq1  ACAGCACCAAAATTACTAATATTTTTGCAGATATTATTTACTATTATAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACCAAAATTACTAATATTTTTGCAGATATTATTTACTATTATAAA  596

seq1  GGTAATATTATTCTTTAAAGTGGCTCATGCTTTCGTTATCTATATTTTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATATTATTCTTTAAAGTGGCTCATGCTTTCGTTATCTATATTTTTA  646

seq1  AAGGGAGCTGCAATGGCATTTTCCTAAAGCAGTTATGTGTTTTCAAATCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGCTGCAATGGCATTTTCCTAAAGCAGTTATGTGTTTTCAAATCT  696

seq1  GTAATTAAAATAAATTATTAAAATTTATAAATATTTTTCAATGACATGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAAAATAAATTATTAAAATTTATAAATATTTTTCAATGACATGCA  746

seq1  TTAGAAACTATGCAAATTATTGGAAATAACAATAGAACATTTTAAAGAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACTATGCAAATTATTGGAAATAACAATAGAACATTTTAAAGAAT  796

seq1  TACAAGGACATAGCAAAAATCGATTTTTGTTCAAATTTTATTGTTTACTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGACATAGCAAAAATCGATTTTTGTTCAAATTTTATTGTTTACTT  846

seq1  CTTTAAAATTACTTAGAATGAGACATACGTAATAGCAATTTGAGCAAGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAATTACTTAGAATGAGACATACGTAATAGCAATTTGAGCAAGAG  896

seq1  AAATCTAATTGAACACCCCAAAATAATGTACCTGTTGGTTCTACTCATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAATTGAACACCCCAAAATAATGTACCTGTTGGTTCTACTCATTT  946

seq1  GTTCCTTAAGAGAAAGACAATGTTAATCACTAAAGGTTGATTGCATGGTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTAAGAGAAAGACAATGTTAATCACTAAAGGTTGATTGCATGGTA  996

seq1  GGGTGAACAATGAGAGCTATTTCTCCCTATGCTATTTTCCTCTTCTCCCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAACAATGAGAGCTATTTCTCCCTATGCTATTTTCCTCTTCTCCCT  1046

seq1  TTTTTTCTCCCTCCCTCCTTTTCCCTTTAATCTTTCTATCAATTTCAGTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCCCTCCCTCCTTTTCCCTTTAATCTTTCTATCAATTTCAGTC  1096

seq1  ATACGGTGTCCAGGTGGAAGGAGACCTGCATTAATTTTGTGAGAATAAAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGGTGTCCAGGTGGAAGGAGACCTGCATTAATTTTGTGAGAATAAAC  1146

seq1  ATGAATTC  1155
      ||||||||
seq2  ATGAATTC  1154


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