BAC Information

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BAC

Clone NameB6Ng01-243L17
Chromosome6 (Build37)
Map Location 28,244,035 - 28,399,199
singlet/doubletdoublet
Overlap geneLOC384360, Gcc1, Arf5, Fscn3, Pax4
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304
Downstream geneLOC100041350, Snd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243L17.bB6Ng01-243L17.g
ACCGA053038GA053039
length9481,055
definitionB6Ng01-243L17.b B6Ng01-243L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,398,256 - 28,399,199)(28,244,035 - 28,245,095)
sequence
gaattcccaccttttttcctccatccaggtagctcaccagcaggctcatt
gtcttctctgtcttccatactatccccatgtctttgtgtggccagactca
actttctccctcctctgtctttacagctatgcactttcctgctcttccaa
ccccttaacctattttttcatctattgagtgtcaggctttttttttttct
gacaagttatcatgtatactggtgccatgtgggaggctactggaaacagg
gtttctgtgagtttctgtttgtgggcatgattcattggggtttggagggt
ttttgttttgttttttagatttggatattgaacctgtgtttcacagtgac
tttgacccttggttacttgggaagataaacccttgtgaaggattcaggac
taggctggtagtctcagcctgtatcctctacccttcacattcctagcaca
accttcctccctccatttctttaatagcaagtatgaagcaggaatgggaa
catagaaatagagtctcatgctcagtagccagagatgcttacctctagca
gcaatgggcttctgaaactcgagctttattctctgagagggtggacttga
tttatgttaaccccaaacgatgccttttttttttttttttttttttagaa
aaaaattcaactttcttactgagtttctggaatgctaagagatgaaaggg
gcatgtctctagatgcttaaaaacaaacaaataataggcactttagttac
tagattcaatgggctctggagtcttggtgtttcattcctgataatttcct
cttccttgtacattgaaaaggaaagagtcctattcaaggattcgggttgg
gctgatgtttcaaccctgctcgctctctgggcacaacttacttctttaca
tgcctcagcatgctaagcttgccttctgtctctttttttctttctttc
gaattctctataaccccggaattctgcaaaaatagaagggacagactggt
accaaatcttaatccaaattttcaagattctaaattcaaaggtaaaaatg
cagtaaatcagaacaagcttgtatcacaaactattccagaagaggacaga
tttactccacacacacacacacacacacacacacacacacacacacacac
acactcctttttaggtcaaaattaatattttttatttgctgtttcttctg
taaactcgaacataaaccaatgatttcacctattgatgcttacagtagaa
tcgggcattgttagtgtatcctctatacgtatcagacatgctattaaaac
atcttcattcatttgtgtagcatatttattgagcacctgctacatgccag
tcatcgaggactacacattccaaacaatgaaggaagctccacctcctggc
atttatacactctgattcttgcagtctctgtgtagattttaccgaagctg
ctgttttcatgcatgctttcaagcttttgttaacttgctttccgattaaa
agcaccaaactggtgagaaaaggaaagaaaaggaaaggacacatctgctc
ctaggtgtggtggaggagaaactatggcagataaaagggagagcactgcc
agaggcagacatgtccggtagagcccagagtgggcatgaccctgagctgc
gtggggagcgaaggaaaggaaaggaacagggagagaggggagccaggggc
agcagccaggaaagccccaggtacaaacaggggcaggtaaccaaaaaagg
ggttggattatagagggggaaaaaagcagcctactggctggagagctcag
gtaatgccagccaggaggaccacttaaaaggcaggggctgagattaccag
aagatctgacagcagggtttcactttgacatgttaattagcactttatcc
attgcccccatgtctgagatttaacacaaactttttttttctttttttaa
ggaaaaaacatatctttccatgatacttttagccaaatgatagtatcagc
ttgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_28398256_28399199
seq2: B6Ng01-243L17.b_46_993 (reverse)

seq1  GAAAG-AAGAAAAAAAGAGACAG-AGGCAAGCTTAGCATGCTGA-GCATG  47
      ||||| ||||||||||||||||| |||||||||||||||||||| |||||
seq2  GAAAGAAAGAAAAAAAGAGACAGAAGGCAAGCTTAGCATGCTGAGGCATG  50

seq1  TAAAGAGTTAAGTTGTGCCCAGAGAGCGAGCAGGGTTAGAACATCAGCCA  97
      ||||||  |||||||||||||||||||||||||||||  |||||||||| 
seq2  TAAAGAAGTAAGTTGTGCCCAGAGAGCGAGCAGGGTTGAAACATCAGCCC  100

seq1  AACCCGAATCCTTG-ATAGGACTCTTTCCTTTTCAATGTACAAGGAAGAG  146
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACCCGAATCCTTGAATAGGACTCTTTCCTTTTCAATGTACAAGGAAGAG  150

seq1  GAAATTATCAGGAATGAAACACCAAGACTCCAGAGCCCATTGAATCTAGT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATCAGGAATGAAACACCAAGACTCCAGAGCCCATTGAATCTAGT  200

seq1  AACTAAAGTGCCTATTATTTGTTTGTTTTTAAGCATCTAGAGACATGCCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGTGCCTATTATTTGTTTGTTTTTAAGCATCTAGAGACATGCCC  250

seq1  CTTTCATCTCTTAGCATTCCAGAAACTCAGTAAGAAAGTTGAATTTTTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCTCTTAGCATTCCAGAAACTCAGTAAGAAAGTTGAATTTTTTT  300

seq1  CTAAAAAAAAAAAAAAAAAAAAAAGGCATCGTTTGGGGTTAACATAAATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAAAAAAAAAAAAAAAAAGGCATCGTTTGGGGTTAACATAAATC  350

seq1  AAGTCCACCCTCTCAGAGAATAAAGCTCGAGTTTCAGAAGCCCATTGCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCACCCTCTCAGAGAATAAAGCTCGAGTTTCAGAAGCCCATTGCTG  400

seq1  CTAGAGGTAAGCATCTCTGGCTACTGAGCATGAGACTCTATTTCTATGTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGTAAGCATCTCTGGCTACTGAGCATGAGACTCTATTTCTATGTT  450

seq1  CCCATTCCTGCTTCATACTTGCTATTAAAGAAATGGAGGGAGGAAGGTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCCTGCTTCATACTTGCTATTAAAGAAATGGAGGGAGGAAGGTTG  500

seq1  TGCTAGGAATGTGAAGGGTAGAGGATACAGGCTGAGACTACCAGCCTAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGAATGTGAAGGGTAGAGGATACAGGCTGAGACTACCAGCCTAGT  550

seq1  CCTGAATCCTTCACAAGGGTTTATCTTCCCAAGTAACCAAGGGTCAAAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATCCTTCACAAGGGTTTATCTTCCCAAGTAACCAAGGGTCAAAGT  600

seq1  CACTGTGAAACACAGGTTCAATATCCAAATCTAAAAAACAAAACAAAAAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGAAACACAGGTTCAATATCCAAATCTAAAAAACAAAACAAAAAC  650

seq1  CCTCCAAACCCCAATGAATCATGCCCACAAACAGAAACTCACAGAAACCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAACCCCAATGAATCATGCCCACAAACAGAAACTCACAGAAACCC  700

seq1  TGTTTCCAGTAGCCTCCCACATGGCACCAGTATACATGATAACTTGTCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCAGTAGCCTCCCACATGGCACCAGTATACATGATAACTTGTCAG  750

seq1  AAAAAAAAAAAGCCTGACACTCAATAGATGAAAAAATAGGTTAAGGGGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGCCTGACACTCAATAGATGAAAAAATAGGTTAAGGGGTT  800

seq1  GGAAGAGCAGGAAAGTGCATAGCTGTAAAGACAGAGGAGGGAGAAAGTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCAGGAAAGTGCATAGCTGTAAAGACAGAGGAGGGAGAAAGTTG  850

seq1  AGTCTGGCCACACAAAGACATGGGGATAGTATGGAAGACAGAGAAGACAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGCCACACAAAGACATGGGGATAGTATGGAAGACAGAGAAGACAA  900

seq1  TGAGCCTGCTGGTGAGCTACCTGGATGGAGGAAAAAAGGTGGGAATTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGCTGGTGAGCTACCTGGATGGAGGAAAAAAGGTGGGAATTC  948

seq1: chr6_28244035_28245095
seq2: B6Ng01-243L17.g_65_1119

seq1  GAATTCTCTATAACCCCGGAATTCTGCAAAAATAGAAGGGACAGACTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATAACCCCGGAATTCTGCAAAAATAGAAGGGACAGACTGGT  50

seq1  ACCAAATCTTAATCCAAATTTTCAAGATTCTAAATTCAAAGGTAAAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATCTTAATCCAAATTTTCAAGATTCTAAATTCAAAGGTAAAAATG  100

seq1  CAGTAAATCAGAACAAGCTTGTATCACAAACTATTCCAGAAGAGGACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAATCAGAACAAGCTTGTATCACAAACTATTCCAGAAGAGGACAGA  150

seq1  TTTACTCCACACACACACACACACACACACACACACACACACACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCCACACACACACACACACACACACACACACACACACACACACAC  200

seq1  ACACTCCTTTTTAGGTCAAAATTAATATTTTTTATTTGCTGTTTCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTTTTTAGGTCAAAATTAATATTTTTTATTTGCTGTTTCTTCTG  250

seq1  TAAACTCGAACATAAACCAATGATTTCACCTATTGATGCTTACAGTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCGAACATAAACCAATGATTTCACCTATTGATGCTTACAGTAGAA  300

seq1  TCGGGCATTGTTAGTGTATCCTCTATACGTATCAGACATGCTATTAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGCATTGTTAGTGTATCCTCTATACGTATCAGACATGCTATTAAAAC  350

seq1  ATCTTCATTCATTTGTGTAGCATATTTATTGAGCACCTGCTACATGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATTCATTTGTGTAGCATATTTATTGAGCACCTGCTACATGCCAG  400

seq1  TCATCGAGGACTACACATTCCAAACAATGAAGGAAGCTCCACCTCCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGAGGACTACACATTCCAAACAATGAAGGAAGCTCCACCTCCTGGC  450

seq1  ATTTATACACTCTGATTCTTGCAGTCTCTGTGTAGATTTTACCGAAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACACTCTGATTCTTGCAGTCTCTGTGTAGATTTTACCGAAGCTG  500

seq1  CTGTTTTCATGCATGCTTTCAAGCTTTTGTTAACTTGCTTTCCGATTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCATGCATGCTTTCAAGCTTTTGTTAACTTGCTTTCCGATTAAA  550

seq1  AGCACCAAACTGGTGAGAAAAGGAAAGAAAAGGAAAGGACACATCTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAAACTGGTGAGAAAAGGAAAGAAAAGGAAAGGACACATCTGCTC  600

seq1  CTAGGTGTGGTGGAGGAGAAACTATGGCAGATAAAAGGGAGAGCACTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGTGGTGGAGGAGAAACTATGGCAGATAAAAGGGAGAGCACTGCC  650

seq1  AGAGGCAGACATGTCCGGTAGAGCCCAGAGTGGGCATGACCCTGAGCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGACATGTCCGGTAGAGCCCAGAGTGGGCATGACCCTGAGCTGC  700

seq1  GTGGGGAGCGAAGGAAAGGAAAGGAACAGGGAGAGAGGGGAGCCAGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAGCGAAGGAAAGGAAAGGAACAGGGAGAGAGGGGAGCCAGGGGC  750

seq1  AGCAGCCAGGAAAGCCCCAGGTACAAACAGGGGCAGGTAACCAAAAAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCAGGAAAGCCCCAGGTACAAACAGGGGCAGGTAACCAAAAAAGG  800

seq1  GGTTGGATTATAGAGGGGGAAAAAAGCAGCCTACTGGCTGGAGAGCTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTTGGATTATAGAGGGGGAAAAAAGCAGCCTACTGGCTGGAGAGCTCA-  849

seq1  GGTAATGCCAGCCAGGAGGACCACTTAAAAGGCAGGGGCTGAGATTACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGCCAGCCAGGAGGACCACTTAAAAGGCAGGGGCTGAGATTACCA  899

seq1  GAAGATCTGACAGCAGGG-TTCACTTTGACATGTTAATTAGGCACTTTAT  949
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  GAAGATCTGACAGCAGGGTTTCACTTTGACATGTTAATTA-GCACTTTAT  948

seq1  CCATTTGCCCCCATGTCTGAGATTTAACACAAACTTTTTTTTTCTTTTTT  999
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCA-TTGCCCCCATGTCTGAGATTTAACACAAACTTTTTTTTTC-TTTTT  996

seq1  TTAAGGAAAAAACAATATCCTTCCATGATACTTTTAGCCAAAATGATAGT  1049
      ||||||||||||| ||||| ||||||||||||||||||| ||||||||||
seq2  TTAAGGAAAAAAC-ATATCTTTCCATGATACTTTTAGCC-AAATGATAGT  1044

seq1  AATCAGCTTGGA  1061
       |||||||||||
seq2  -ATCAGCTTGGA  1055