BAC Information

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BAC

Clone NameB6Ng01-243M16
Chromosome6 (Build37)
Map Location 65,379,334 - 65,379,883
singlet/doubletsinglet
Overlap geneC130060K24Rik
Upstream geneGrid2, Atoh1, LOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141
Downstream gene9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243M16.bB6Ng01-243M16.g
ACCGA053083GA053084
length5441,161
definitionB6Ng01-243M16.b B6Ng01-243M16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
tttgcatagtggtacaaaaaaatgaagcaattgtaggccaccaagttcag
cgtcaagtttataccactctcacggtgtagcctgcaagtgatgtccattt
gtttggtgcatttcaggccatcattgtgcctaacttttgcaaaccgatat
tctaaatgaagttgaagatcttatttcacagcacgacaccaaatgatcct
ttagcatattttctggctcctttaaagccattctttttttattaagtaac
aattgctgagaacatctcacactgagtcaaatgaggtagcgcatcctcct
cttgtatcattaaccctaagtacagacctccctttgagaataccaggcat
gttttccaaagtaattacttgtgatcttgatgttcttccaacttcatttg
gaataaagcttgagaacattcatatatatgtgtatacatacatacataca
tacatacatatatatacatatatatatatgaattttttaagagtgtttta
ttaagtgtagcttccttttatttattgggtgggtgggtgggtgt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacattcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggag
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgcccggggcctagcaaa
cacagaagtggatgccccacagtcagctaatggatggatcacaggcttcc
caatggaggagctagagaaagtacccaaggagctaaagggattcttgcaa
ctctatagtgatcaccatatgaactaccagtaccccagagctctttgact
ctagctgcatatgtatcaagatgcttagtccgtcatcactggaagagagg
tccatgacaccaactaatgccaaacggtaacgccagccatatgggactgg
ctgctataggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_65379334_65379883
seq2: B6Ng01-243M16.b_44_593 (reverse)

seq1  ACACCCACCCACCCACCCAATAAATAAAAGGAAGCTACACTTAATAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACCCACCCACCCAATAAATAAAAGGAAGCTACACTTAATAAAAC  50

seq1  ACTCTTAAAAAATTCATATATATATATGTATATATATGTATGTATGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAAAAAATTCATATATATATATGTATATATATGTATGTATGTATG  100

seq1  TATGTATGTATACACATATATATGAATGTTCTCAAGCTTTATTCCAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTATACACATATATATGAATGTTCTCAAGCTTTATTCCAAATG  150

seq1  AAGTTGGAAGAACATCAAGATCACAAGTAATTACTTTGGAAAACATGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGAAGAACATCAAGATCACAAGTAATTACTTTGGAAAACATGCCT  200

seq1  GGTATTCTCAAAGGGAGGTCTGTACTTAGGGTTAATGATACAAGAGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCTCAAAGGGAGGTCTGTACTTAGGGTTAATGATACAAGAGGAGG  250

seq1  ATGCGCTACCTCATTTGACTCAGTGTGAGATGTTCTCAGCAATTGTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCTACCTCATTTGACTCAGTGTGAGATGTTCTCAGCAATTGTTACT  300

seq1  TAATAAAAAAAGAATGGCTTTAAAGGAGCCAGAAAATATGCTAAAGGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAAAAGAATGGCTTTAAAGGAGCCAGAAAATATGCTAAAGGATC  350

seq1  ATTTGGTGTCGTGCTGTGAAATAAGATCTTCAACTTCATTTAGAATATCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTGTCGTGCTGTGAAATAAGATCTTCAACTTCATTTAGAATATCG  400

seq1  GTTTGCAAAAGTTAGGCACAATGATGGCCTGAAATGCACCAAACAAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAAAAGTTAGGCACAATGATGGCCTGAAATGCACCAAACAAATGG  450

seq1  ACATCACTTGCAGGCTACACCGTGAGAGTGGTATAAACTTGACGCTGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACTTGCAGGCTACACCGTGAGAGTGGTATAAACTTGACGCTGAAC  500

seq1  TTGGTGGCCTACAATTGCTTCATTTTTTTGTACCACTATGCAAAGAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGCCTACAATTGCTTCATTTTTTTGTACCACTATGCAAAGAATTC  550