BAC Information

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BAC

Clone NameB6Ng01-244D07
Chromosome6 (Build37)
Map Location 87,783,858 - 87,784,997
singlet/doubletsinglet
Overlap geneIsy1
Upstream gene2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43
Downstream geneCnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244D07.bB6Ng01-244D07.g
ACCGA053398GA053399
length1,1981,145
definitionB6Ng01-244D07.b B6Ng01-244D07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcgtgagcccactgtcgtacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagatgag
gcattctgtcagtccgtgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgaggaatggtgccatatctggggctcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagccttggtgagtggaagcccatgttgctgagcccaagcataacctcc
atctcgaccaccatggccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgattgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcagctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttggagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtccctgaccatccagccaatccattggctacagcccatga
gtcagtgtataatcgtacatctggccatttcttcttgcaaacaaactgta
ataccatgtgtactgcccgaagttctgcccactgtgaagatttcccttca
cctgtgtctttcaaggttgtcccagaaaggggttgtaatgctgcagctgt
ccacttctgggtggtgcctgcataacatgcagagccatcagtaaaccagg
ctctagtcttctcctcttcggtcagtagatcatagggaacaccccatgag
gctataggcgcatgtttgggcagcagatggcattgtacaggagtagaaac
cataggcatttgagcacttcttcatgtaacttgcttgtgccttcagggac
ctgcttctggccgatcacgtatataccacttcaattgatattagactgct
gctgtgccgcgttcccacctttattgaacctgccagtctgataggtaccc
agcctccatgatatgggttgaggtcctagggctcgctgcacataatag
gaattccaggccagccaagatacaaagtgagactatgtcttaaaaaacag
cactgggcagtggtagtgcacacttgggaggcagaggcaagcaatttctg
tgagttcgaggtcagcctggtttacagagagttctaggacagccaaggct
acacagagaaaccctgtctcaaaaaaccaaaacagccggcatggtggcgc
acgcctttaatcccagcactcagcaggcagaggcaggcggatttctgagt
tcgaggccagcctagtctacaaagtgagttccaggacagccagggctgta
cagagaaaccctgtctcgaaaaaaacaaaaacaaaaacaaacaaaaacaa
aaaccaacaataacaaaaaacaaaacagcttttaatcctagaactaggga
ggcagaggcaggcagatctgtgaattagagactagcctggtatacacagc
tattagccaggaatacaaaaagagacccagtctcaaaaaaaaaaaaaaat
ttggttaataatcattgatgaggtaaaaagaagcaagcagagccattatt
tctactgaacatacctgccgtctccacttctccgctttcggcaactcagt
acattcagaagcaaggaagggtctccgttcctaaggagggtgagagtaac
acacatggtaactgggctctgtacacacctatgtgacatccacaaccgat
tcagccttgaaaccttaaatatttaatgctctaaatatacttgaagtcac
agtgctagaggatattcaattcctaaccatcactgtacaatctcttagga
agctatataattaggatatataattactccaggaactgtgtatagttaaa
ataaatatatacaaatatttaatctctccaggtccactctctaccttctt
ctagtcaatattaaagctggaataataagggggcaagcgggaggcagata
atcacatgccaacagaaaaagaggctaagcagacgcacaagtgtacaaaa
ctcttcagcaaacacagcaaggaagagctgcggctcgaagccttgcattc
tgctctggtacttccagggagtgccttcactcacttgaccttttccctct
tcagcttgagctggacgaatctcgcgagggcagttcttgcaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87783858_87784997
seq2: B6Ng01-244D07.g_63_1207

seq1  GAATTCCAGGCCAGCCAAGATACAAAGTGAGACTATGTCTTAAAAAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCAAGATACAAAGTGAGACTATGTCTTAAAAAACAG  50

seq1  CACTGGGCAGTGGTAGTGCACACTTGGGAGGCAGAGGCAAGCAATTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGCAGTGGTAGTGCACACTTGGGAGGCAGAGGCAAGCAATTTCTG  100

seq1  TGAGTTCGAGGTCAGCCTGGTTTACAGAGAGTTCTAGGACAGCCAAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCGAGGTCAGCCTGGTTTACAGAGAGTTCTAGGACAGCCAAGGCT  150

seq1  ACACAGAGAAACCCTGTCTCAAAAAACCAAAACAGCCGGCATGGTGGCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAACCCTGTCTCAAAAAACCAAAACAGCCGGCATGGTGGCGC  200

seq1  ACGCCTTTAATCCCAGCACTCAGCAGGCAGAGGCAGGCGGATTTCTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTAATCCCAGCACTCAGCAGGCAGAGGCAGGCGGATTTCTGAGT  250

seq1  TCGAGGCCAGCCTAGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCCAGCCTAGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTGTA  300

seq1  CAGAGAAACCCTGTCTCGAAAAAAACAAAAACAAAAACAAACAAAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTCTCGAAAAAAACAAAAACAAAAACAAACAAAAACAA  350

seq1  AAACCAACAATAACAAAAAACAAAACAGCTTTTAATCCTAGAACTAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAACAATAACAAAAAACAAAACAGCTTTTAATCCTAGAACTAGGGA  400

seq1  GGCAGAGGCAGGCAGATCTGTGAATTAGAGACTAGCCTGGTATACACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGCAGATCTGTGAATTAGAGACTAGCCTGGTATACACAGC  450

seq1  TATTAGCCAGGAATACAAAAAGAGACCCAGTCTCAAAAAAAAAAAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCCAGGAATACAAAAAGAGACCCAGTCTCAAAAAAAAAAAAAAAT  500

seq1  TTGGTTAATAATCATTGATGAGGTAAAAAGAAGCAAGCAGAGCCATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAATAATCATTGATGAGGTAAAAAGAAGCAAGCAGAGCCATTATT  550

seq1  TCTACTGAACATACCTGCCGTCTCCACTTCTCCGCTTTCGGCAACTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGAACATACCTGCCGTCTCCACTTCTCCGCTTTCGGCAACTCAGT  600

seq1  ACATTCAGAAGCAAGGAAGGGTCTCCGTTCCTAAGGAGGGTGAGAGTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGAAGCAAGGAAGGGTCTCCGTTCCTAAGGAGGGTGAGAGTAAC  650

seq1  ACACATGGTAACTGGGCTCTGTACACACCTATGTGACATCCACAACCGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGTAACTGGGCTCTGTACACACCTATGTGACATCCACAACCGAT  700

seq1  TCAGCCTTGAAACCTTAAATATTTAATGCTCTAAATATACTTGAAGTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTGAAACCTTAAATATTTAATGCTCTAAATATACTTGAAGTCAC  750

seq1  AGTGCTAGAGGATATTCAATTCCTAACCATCACTGTACAATCTCTTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGAGGATATTCAATTCCTAACCATCACTGTACAATCTCTTAGGA  800

seq1  AGCTATATAATTAGGATATATAATTACTCCAGGAACTGTGTATAGTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATATAATTAGGATATATAATTACTCCAGGAACTGTGTATAGTTAAA  850

seq1  ATAAATATATACAAATATTTAATCTCTCCAGGTCCACTCTCTACCTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATATACAAATATTTAATCTCTCCAGGTCCACTCTCTACCTTCTT  900

seq1  CTAGTCAATATTAAAGCTGGAATAATAA-GGGGCAAGCGGGAGGCAGATA  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTAGTCAATATTAAAGCTGGAATAATAAGGGGGCAAGCGGGAGGCAGATA  950

seq1  ATCACATGCCAACAG-AAAAGAGGCTAAGCAGACGCACAAGTGTAC-AAA  997
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  ATCACATGCCAACAGAAAAAGAGGCTAAGCAGACGCACAAGTGTACAAAA  1000

seq1  CTCTTCAGCAAACACAGC-AGGAAGAGCTGCGGCTCGAAGCC-TGCA-TC  1044
      |||||||||||||||||| ||||||||||||||||||||||| |||| ||
seq2  CTCTTCAGCAAACACAGCAAGGAAGAGCTGCGGCTCGAAGCCTTGCATTC  1050

seq1  TGCTCCTGGTACTTCCCAGGGAGTG-CTTCACTCACCTTGA-CTTTTCCC  1092
      |||| ||||||||| |||||||||| ||||||||| ||||| ||||||||
seq2  TGCT-CTGGTACTT-CCAGGGAGTGCCTTCACTCA-CTTGACCTTTTCCC  1097

seq1  TCTTCCAGC-TGAGCTTGACGAAACCTCGCCAGGGCAG-TCCTGCAGGCA  1140
      |||| |||| |||||| |||| || ||||| ||||||| || ||||||||
seq2  TCTT-CAGCTTGAGCTGGACG-AATCTCGCGAGGGCAGTTCTTGCAGGCA  1145