BAC Information

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BAC

Clone NameB6Ng01-244O16
Chromosome6 (Build37)
Map Location 47,343,100 - 47,419,916
singlet/doubletdoublet
Overlap geneA930035D04Rik, Cul1
Upstream geneCntnap2, Rbpsuh-rs3, LOC622745, LOC100041064, LOC100041078
Downstream geneEzh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244O16.bB6Ng01-244O16.g
ACCGA053936GA053937
length1,177844
definitionB6Ng01-244O16.b B6Ng01-244O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,343,100 - 47,344,280)(47,419,308 - 47,419,916)
sequence
gaattcacaaggaaaaagagaagtaattctggttcactgtgatatggaca
ccggatagcaaacccataatgtataaaaatacaatggtggaaaaccttca
aaggagttgaaatctaggccaagaaccaaggccctgaatatccccacctg
caaagagtaaaagcaatagtatggttctaaaacaatactaaggcacaaac
gactgatttaccactaggtgccttcaaaacacggctctaaagagttcaca
catatatgctttacatcaaagtagttgggggagctttttaatcacttgtg
gaggtactgagattgaatctagactctcacaccactgagccacataccaa
gcttctttactctgacaaaccagttcctaaggcctaagcacaacatgata
atttcaggaacaacctcccctctgatagcagtctctgtcttagtgtcctt
tcatgttgtcatgataaaataccctgagaaaagcaagttaaggtttattt
tagctgacagttcaaggtacagtccatcatggtgaagaagtcacagtagc
agggtcttgacgatctggccccatggcatgcatagttagaatgacaaatg
aatgcacctgctcagttccctcagtgtctctaggaagcattcttatacac
aaatctaaggggttttacctaccaaagtacagttttggaccacaaagcag
aaccaaaggatgcacttcatagcaaagatgctgtatcagtggttgcatgc
catcttgtcaaaaagctgtttccaagctgggtgtggtggcacacgccttt
aatcccagcactcgggaggcagaggcaggtgaatttctgaattcgaggcc
agcctggtctacaaagtgagttccaggacagccagggctatacagagaaa
ccctgtctcgaaaaaaaacaaaaaacaaaaaccaaaaacaaacaaacaaa
gctgtttccttgaaggagcaatagaagttcttgttaagggtggtggctga
aatcctccatgggcctcacatggggaatcatcattctatgcagttaaaat
actccaaacatagcatgttatcactgtattcctcaattagatggatcatg
tctaggtggaaaggaatgggaatagagtatctacctgcctgtcactcagt
caacagcaggagtgtgtgccttccttc
gaattcttgggcaccagacccacatacaggcaaaatattcatacactagt
gtagccataatgttattgtgcactctgtaaagtttatctttgagttactc
aaatgctgatttctctgccctcatatctagctgcaatctggatagagcat
tgtattgcttaagtcaagaatctcctgtctcaagtttgtgtaaacaatgt
tcatcatttattctctgccttatcaacagaagctggaaaagcaaataact
aggcaatagagagaatagggcaggatttcagctagccagggtaagggggg
agagagaagagtaagagagaggagacattatgggaaaatacatctagagc
caagagggccagaccagtactaaaatacaagtatctcagggatttgctta
gaggattaaaatagatcaatgactgcccaggttttatgtgatacagcttg
attgagtaaatcttggtctgtgtcattactgaggaactagctaggataaa
ggaaaaaaaaaagtcactgtattaatttacgacaaacatttgtattaatt
ttaattgctacacattagaataaaaatgaattcttgggggtgcggatgag
actaaacttaaacactctagctttaaatttttatgagttgttttgttcat
ttacagaaacaagaacatctctataagctgactttggttctacatatata
catgctttaacctaccactaaaagtcaaattactgagccctccaacttaa
aaccttgccctgtaacaaacaagcaaaaatacaatttccaagaattaccc
aaactcactggtcatatatatgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47343100_47344280
seq2: B6Ng01-244O16.b_49_1225

seq1  GAATTCACAAGGAAAAAGAGAAGTAATTCTGGTTCACTGTGATATGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAGGAAAAAGAGAAGTAATTCTGGTTCACTGTGATATGGACA  50

seq1  CCGGATAGCAAACCCATAATGTATAAAAATACAATGGTGGAAAACCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATAGCAAACCCATAATGTATAAAAATACAATGGTGGAAAACCTTCA  100

seq1  AAGGAGTTGAAATCTAGGCCAAGAACCAAGGCCCTGAATATCCCCACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTGAAATCTAGGCCAAGAACCAAGGCCCTGAATATCCCCACCTG  150

seq1  CAAAGAGTAAAAGCAATAGTATGGTTCTAAAACAATACTAAGGCACAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGTAAAAGCAATAGTATGGTTCTAAAACAATACTAAGGCACAAAC  200

seq1  GACTGATTTACCACTAGGTGCCTTCAAAACACGGCTCTAAAGAGTTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATTTACCACTAGGTGCCTTCAAAACACGGCTCTAAAGAGTTCACA  250

seq1  CATATATGCTTTACATCAAAGTAGTTGGGGGAGCTTTTTAATCACTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGCTTTACATCAAAGTAGTTGGGGGAGCTTTTTAATCACTTGTG  300

seq1  GAGGTACTGAGATTGAATCTAGACTCTCACACCACTGAGCCACATACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTACTGAGATTGAATCTAGACTCTCACACCACTGAGCCACATACCAA  350

seq1  GCTTCTTTACTCTGACAAACCAGTTCCTAAGGCCTAAGCACAACATGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTACTCTGACAAACCAGTTCCTAAGGCCTAAGCACAACATGATA  400

seq1  ATTTCAGGAACAACCTCCCCTCTGATAGCAGTCTCTGTCTTAGTGTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGAACAACCTCCCCTCTGATAGCAGTCTCTGTCTTAGTGTCCTT  450

seq1  TCATGTTGTCATGATAAAATACCCTGAGAAAAGCAAGTTAAGGTTTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTGTCATGATAAAATACCCTGAGAAAAGCAAGTTAAGGTTTATTT  500

seq1  TAGCTGACAGTTCAAGGTACAGTCCATCATGGTGAAGAAGTCACAGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGACAGTTCAAGGTACAGTCCATCATGGTGAAGAAGTCACAGTAGC  550

seq1  AGGGTCTTGACGATCTGGCCCCATGGCATGCATAGTTAGAATGACAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTTGACGATCTGGCCCCATGGCATGCATAGTTAGAATGACAAATG  600

seq1  AATGCACCTGCTCAGTTCCCTCAGTGTCTCTAGGAAGCATTCTTATACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACCTGCTCAGTTCCCTCAGTGTCTCTAGGAAGCATTCTTATACAC  650

seq1  AAATCTAAGGGGTTTTACCTACCAAAGTACAGTTTTGGACCACAAAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAAGGGGTTTTACCTACCAAAGTACAGTTTTGGACCACAAAGCAG  700

seq1  AACCAAAGGATGCACTTCATAGCAAAGATGCTGTATCAGTGGTTGCATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGGATGCACTTCATAGCAAAGATGCTGTATCAGTGGTTGCATGC  750

seq1  CATCTTGTCAAAAAGCTGTTTCCAAGCTGGGTGTGGTGGCACACGCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTCAAAAAGCTGTTTCCAAGCTGGGTGTGGTGGCACACGCCTTT  800

seq1  AATCCCAGCACTCGGGAGGCAGAGGCAGGTGAATTTCTGAATTCGAGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTCGGGAGGCAGAGGCAGGTGAATTTCTGAATTCGAGGCC  850

seq1  AGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAA  900

seq1  CCCTGTCTCGAAAAAAAAACAAAAAACAAAAACAAAAAACAAACAAACAA  950
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  CCCTGTCTCG-AAAAAAAACAAAAAACAAAAACCAAAAACAAACAAACAA  949

seq1  AGCTGTTTCCTTG-AGGAGCAATAGAAGT--CTGTTAAGGGT-GTGGCTG  996
      ||||||||||||| |||||||||||||||   |||||||||| |||||||
seq2  AGCTGTTTCCTTGAAGGAGCAATAGAAGTTCTTGTTAAGGGTGGTGGCTG  999

seq1  AGAT-CTCCATGGGCCTCACCATGGGGAATCATCA-TCTATGCAG-TAAA  1043
      | || |||||||||||||| ||||||||||||||| ||||||||| ||||
seq2  AAATCCTCCATGGGCCTCA-CATGGGGAATCATCATTCTATGCAGTTAAA  1048

seq1  ATACTCCAAACATAAGCCATTGTATCACTGTATT-CTC-ATTAGATGGAA  1091
      ||||||||||||||   |||  |||||||||||| ||| |||||||||| 
seq2  ATACTCCAAACATA--GCATGTTATCACTGTATTCCTCAATTAGATGGA-  1095

seq1  TTCATGGTTCTAGGGTTGAAGGGATGGAAATAGGAGTAATCTACTTG-CT  1140
       |||||  ||||||    |||| |||| |||| |||| |||||| || ||
seq2  -TCATG--TCTAGGTGGAAAGGAATGGGAATA-GAGT-ATCTACCTGCCT  1140

seq1  GTCACCTCCAGTCACACAGCAGGGAAGTGTGTG-CTTCCTTC  1181
      |||||   |||||| ||||||||  |||||||| ||||||||
seq2  GTCAC--TCAGTCA-ACAGCAGG--AGTGTGTGCCTTCCTTC  1177

seq1: chr6_47419308_47419916
seq2: B6Ng01-244O16.g_300_908 (reverse)

seq1  CACACACACACACACACACACACATATATATGACCAGTGAGTTTGGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACATATATATGACCAGTGAGTTTGGGTAA  50

seq1  TTCTTGGAAATTGTATTTTTGCTTGTTTGTTACAGGGCAAGGTTTTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGAAATTGTATTTTTGCTTGTTTGTTACAGGGCAAGGTTTTAAGT  100

seq1  TGGAGGGCTCAGTAATTTGACTTTTAGTGGTAGGTTAAAGCATGTATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGCTCAGTAATTTGACTTTTAGTGGTAGGTTAAAGCATGTATATA  150

seq1  TGTAGAACCAAAGTCAGCTTATAGAGATGTTCTTGTTTCTGTAAATGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAACCAAAGTCAGCTTATAGAGATGTTCTTGTTTCTGTAAATGAAC  200

seq1  AAAACAACTCATAAAAATTTAAAGCTAGAGTGTTTAAGTTTAGTCTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACTCATAAAAATTTAAAGCTAGAGTGTTTAAGTTTAGTCTCATC  250

seq1  CGCACCCCCAAGAATTCATTTTTATTCTAATGTGTAGCAATTAAAATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCCCCAAGAATTCATTTTTATTCTAATGTGTAGCAATTAAAATTAA  300

seq1  TACAAATGTTTGTCGTAAATTAATACAGTGACTTTTTTTTTTCCTTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGTTTGTCGTAAATTAATACAGTGACTTTTTTTTTTCCTTTATC  350

seq1  CTAGCTAGTTCCTCAGTAATGACACAGACCAAGATTTACTCAATCAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAGTTCCTCAGTAATGACACAGACCAAGATTTACTCAATCAAGCT  400

seq1  GTATCACATAAAACCTGGGCAGTCATTGATCTATTTTAATCCTCTAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACATAAAACCTGGGCAGTCATTGATCTATTTTAATCCTCTAAGCA  450

seq1  AATCCCTGAGATACTTGTATTTTAGTACTGGTCTGGCCCTCTTGGCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTGAGATACTTGTATTTTAGTACTGGTCTGGCCCTCTTGGCTCTA  500

seq1  GATGTATTTTCCCATAATGTCTCCTCTCTCTTACTCTTCTCTCTCCCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATTTTCCCATAATGTCTCCTCTCTCTTACTCTTCTCTCTCCCCCC  550

seq1  TTACCCTGGCTAGCTGAAATCCTGCCCTATTCTCTCTATTGCCTAGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTGGCTAGCTGAAATCCTGCCCTATTCTCTCTATTGCCTAGTTAT  600

seq1  TTGCTTTTC  609
      |||||||||
seq2  TTGCTTTTC  609