BAC Information

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BAC

Clone NameB6Ng01-245B23
Chromosome6 (Build37)
Map Location 30,123,511 - 30,266,944
singlet/doubletdoublet
Overlap geneUbe2h
Upstream geneD330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1
Downstream geneZc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245B23.bB6Ng01-245B23.g
ACCGA054088GA054089
length6391,024
definitionB6Ng01-245B23.b B6Ng01-245B23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,266,309 - 30,266,944)(30,123,511 - 30,124,529)
sequence
gaattcaaggccagagtaagttccaggatagccagggatacataaagaaa
ccctgctttcaaaaagaaaaaataaaaaagatgtaataattaaaaagcaa
catcaaacataacaaacctcttgtacccattaggtgtttgttaccccagg
ccttagacatctttttggacgtttcatggaaatgcagtcacatactgtgc
cggctgtttgtgactgacttctttcactttacacaaagtttccagtggtc
gcctatgctgtagcatgtgtttgtgctttttattgctcaataatattcca
gtgtatggacataccacgtttatttcattcattcagcaatttggacactt
aagtttttctactttatggctattctgaatagcctgaatattctgaatag
ttgctttatcagcaagataaagatgtgtgcaagttttttgtgtgtcaggg
tgggatttcttagttaactactaacaaacatttattaactgcctgttgtg
cacattagcatgggattaaagggaagttgaatatactcattattaaagta
atcacaaatacatttttaaactaaatatctataggactggcaagatgagg
cagtgggtgaacgctttgtggcactaacaggagggccta
gaattcacagtgccgcgtcatccccgaaggccacagccacgacgtggcct
ctgcttgcccctccggccgcccacaaaactgggtgctagaactgttggcc
ctccggcacccgctccaccttctccctggcccagcactggctccgcccgg
ccccgccccgcacactcacctgcgccggctccgggctgggctcaccgccg
cctcccagctctgctccgagtccacacccgaggaactaggcaaaaaaagg
gccctcgtttggagcgggcccaatggacagaacttgaggcgtgcccaggt
tgagccgagagcggcgccccaaatcaccaggaccttggcgggaggaggtg
gcgccggagcgcggagcccagcgggggaacaaagaggagccgggatgggg
ccgcgcgcttcctgggtgtcgggtgacaggtctgcaggggaaggccccgg
ccgagccacctgaggaggagcctcttccacgcagcaggcggggtagggct
gaatggtcaccgagccccagaggcagacgaaaggggtgcaccaggtgtga
cgatcgtgttcaaggaaggaggctagcaggctccggcgccgagacccggg
ggctcgacggagtgcagagataatgactccgggagggttttaccgccccc
agcgccccgcccgccccccgcgccgcgccattggctcaggtgctgtgggg
cgggggagggacgggaggcggaccgaagatgattcaccttgaatgttgct
ccggttggtgcgcgtcgtagggcacgcccgaccgggactgcggatacgtc
gcgagccccgcctgttcgccgaacccagctgggtttggcccctaaggggt
cccgctgcccactcgctgttctagcctcctacctttgggctggggtgccg
ccggccgaggtgtgccccgatgccctaccatccacctccctctgaacccc
ttgctagccaaggtggtggtgtagcacagcaactttggaaatccgactct
gggctgggggggagggggaagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_30266309_30266944
seq2: B6Ng01-245B23.b_45_683 (reverse)

seq1  TAGGCCCTCCTGTTAGTGCCAC-AAGCGTTCACCCACTGCCTCATCTTGC  49
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAGGCCCTCCTGTTAGTGCCACAAAGCGTTCACCCACTGCCTCATCTTGC  50

seq1  CAGTCCTCTAGATATTTAGTTTAAAAATGTATTTGTGTTTACTTTAATAC  99
      ||||||| ||||||||||||||||||||||||||||| ||||||||||| 
seq2  CAGTCCTATAGATATTTAGTTTAAAAATGTATTTGTGATTACTTTAATAA  100

seq1  TGAGTATATTCAACTTCCCTTTAATCCCATGCT-ATGTGCACAACAGGCA  148
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGAGTATATTCAACTTCCCTTTAATCCCATGCTAATGTGCACAACAGGCA  150

seq1  GTTAATAAATGTTTGTTAGTAGTTAACTAAGAAATCCCACCCTGACACAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAAATGTTTGTTAGTAGTTAACTAAGAAATCCCACCCTGACACAC  200

seq1  -AAAAACTTGCACACATCTTTATCTTGCTGATAAAGCAACTATTCAGAAT  247
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTGCACACATCTTTATCTTGCTGATAAAGCAACTATTCAGAAT  250

seq1  ATTCAGGCTATTCAGAATAGCCATAAAGTAGAAAAACTTAAGTGTCCAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGCTATTCAGAATAGCCATAAAGTAGAAAAACTTAAGTGTCCAAA  300

seq1  TTGCTGAATGAATGAAATAAACGTGGTATGTCCATACACTGGAATATTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAATGAATGAAATAAACGTGGTATGTCCATACACTGGAATATTAT  350

seq1  TGAGCAATAAAAAGCACAAACACATGCTACAGCATAGGCGACCACTGGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAATAAAAAGCACAAACACATGCTACAGCATAGGCGACCACTGGAA  400

seq1  ACTTTGTGTAAAGTGAAAGAAGTCAGTCACAAACAGCCGGCACAGTATGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTGTAAAGTGAAAGAAGTCAGTCACAAACAGCCGGCACAGTATGT  450

seq1  GACTGCATTTCCATGAAACGTCCAAAAAGATGTCTAAGGCCTGGGGTAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCATTTCCATGAAACGTCCAAAAAGATGTCTAAGGCCTGGGGTAAC  500

seq1  AAACACCTAATGGGTACAAGAGGTTTGTTATGTTTGATGTTGCTTTTTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTAATGGGTACAAGAGGTTTGTTATGTTTGATGTTGCTTTTTAA  550

seq1  TTATTACATCTTTTTTATTTTTTCTTTTTGAAAGCAGGGTTTCTTTATGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACATCTTTTTTATTTTTTCTTTTTGAAAGCAGGGTTTCTTTATGT  600

seq1  ATCCCTGGCTATCCTGGAACTTACTCTGGCCTTGAATTC  636
      |||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGGCTATCCTGGAACTTACTCTGGCCTTGAATTC  639

seq1: chr6_30123511_30124529
seq2: B6Ng01-245B23.g_66_1089

seq1  GAATTCACAGTGCCGCGTCATCCCCGAAGGCCACAGCCACGACGTGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTGCCGCGTCATCCCCGAAGGCCACAGCCACGACGTGGCCT  50

seq1  CTGCTTGCCCCTCCGGCCGCCCACAAAACTGGGTGCTAGAACTGTTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCCCCTCCGGCCGCCCACAAAACTGGGTGCTAGAACTGTTGGCC  100

seq1  CTCCGGCACCCGCTCCACCTTCTCCCTGGCCCAGCACTGGCTCCGCCCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGCACCCGCTCCACCTTCTCCCTGGCCCAGCACTGGCTCCGCCCGG  150

seq1  CCCCGCCCCGCACACTCACCTGCGCCGGCTCCGGGCTGGGCTCACCGCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCCCCGCACACTCACCTGCGCCGGCTCCGGGCTGGGCTCACCGCCG  200

seq1  CCTCCCAGCTCTGCTCCGAGTCCACACCCGAGGAACTAGGCAAAAAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAGCTCTGCTCCGAGTCCACACCCGAGGAACTAGGCAAAAAAAGG  250

seq1  GCCCTCGTTTGGAGCGGGCCCAATGGACAGAACTTGAGGCGTGCCCAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCGTTTGGAGCGGGCCCAATGGACAGAACTTGAGGCGTGCCCAGGT  300

seq1  TGAGCCGAGAGCGGCGCCCCAAATCACCAGGACCTTGGCGGGAGGAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCGAGAGCGGCGCCCCAAATCACCAGGACCTTGGCGGGAGGAGGTG  350

seq1  GCGCCGGAGCGCGGAGCCCAGCGGGGGAACAAAGAGGAGCCGGGATGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCGGAGCGCGGAGCCCAGCGGGGGAACAAAGAGGAGCCGGGATGGGG  400

seq1  CCGCGCGCTTCCTGGGTGTCGGGTGACAGGTCTGCAGGGGAAGGCCCCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGCGCTTCCTGGGTGTCGGGTGACAGGTCTGCAGGGGAAGGCCCCGG  450

seq1  CCGAGCCACCTGAGGAGGAGCCTCTTCCACGCAGCAGGCGGGGTAGGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCCACCTGAGGAGGAGCCTCTTCCACGCAGCAGGCGGGGTAGGGCT  500

seq1  GAATGGTCACCGAGCCCCAGAGGCAGACGAAAGGGGTGCACCAGGTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTCACCGAGCCCCAGAGGCAGACGAAAGGGGTGCACCAGGTGTGA  550

seq1  CGATCGTGTTCAAGGAAGGAGGCTAGCAGGCTCCGGCGCCGAGACCCGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCGTGTTCAAGGAAGGAGGCTAGCAGGCTCCGGCGCCGAGACCCGGG  600

seq1  GGCTCGACGGAGTGCAGAGATAATGACTCCGGGAGGGTTTTACCGCCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGACGGAGTGCAGAGATAATGACTCCGGGAGGGTTTTACCGCCCCC  650

seq1  AGCGCCCCGCCCGCCCCCCGCGCCGCGCCATTGGCTCAGGTGCTGTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCCCGCCCGCCCCCCGCGCCGCGCCATTGGCTCAGGTGCTGTGGGG  700

seq1  CGGGGGAGGGACGGGAGGCGGACCGAAGATGATTCACCTTGAATGTTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGAGGGACGGGAGGCGGACCGAAGATGATTCACCTTGAATGTTGCT  750

seq1  CCGGTTGGTGCGCGTCGTAGGGCACGCCCGACCGGGACTGCGGATACGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTTGGTGCGCGTCGTAGGGCACGCCCGACCGGGACTGCGGATACGTC  800

seq1  GCGAGCCCCGCCTGTTCGCCGAACCCAGCTGGGTTTGGCCCCTAAGGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCCCCGCCTGTTCGCCGAACCCAGCTGGGTTTGGCCCCTAAGGGGT  850

seq1  CCCGCTGCCCACTCGCTGTTCTAGCCTCCTACC-TTGGGCTGGGGTGCCG  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCCGCTGCCCACTCGCTGTTCTAGCCTCCTACCTTTGGGCTGGGGTGCCG  900

seq1  CCGGCCGAGGTGTGCCCCGATGCCCTACCATCCCACCTCCCTCTGAACCC  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCGGCCGAGGTGTGCCCCGATGCCCTACCAT-CCACCTCCCTCTGAACCC  949

seq1  CTTGCTAGCCAAGGTG--TGTGTAGCACAGCAAACTTGGAAATCCGACTC  997
      ||||||||||||||||   ||||||||||||||  |||||||||||||||
seq2  CTTGCTAGCCAAGGTGGTGGTGTAGCACAGCAACTTTGGAAATCCGACTC  999

seq1  TGGGCTGGGGG---AGGGGAAGTGC  1019
      |||||||||||    ||||||||||
seq2  TGGGCTGGGGGGGAGGGGGAAGTGC  1024