MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-245H11
Chromosome	6 (Build37)
Map Location	127,283,779 - 127,396,438
singlet/doublet	doublet
Overlap gene	EG640703, LOC100043848
Upstream gene	LOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578
Downstream gene	Parp11, Efcab4b, Prmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC667427 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667427
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC100043567 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043567
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Kcna5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16493 MGI:96662
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcna1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16485 MGI:96654
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcna6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16494 MGI:96663
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667463 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667463
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Ndufa9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66108 MGI:1913358
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Akap3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11642 MGI:1341149
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dyrk4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:101320 MGI:1330292
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rad51ap1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19362 MGI:1098224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D6Wsu163e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:28040 MGI:107893
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667473 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667473
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	LOC624256 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:624256
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 2 Proteins pseudo : _no_value

name	Fgf6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14177 MGI:95520
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fgf23 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64654 MGI:1891427
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9630033F20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319801 MGI:2442752
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccnd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12444 MGI:88314
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tpi-rs11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:111223 MGI:98799
definition	note : triosephosphate isomerase related sequence 11 pseudo : _no_value

name	EG243642 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:243642 MGI:3647516
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 620 ESTs, 8 Proteins

name	LOC100043578 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043578
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	EG640703 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:640703 MGI:3644558
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 451 ESTs, 78 Proteins

name	LOC100043848 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043848
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 315 ESTs, 12 Proteins pseudo : _no_value

name	Parp11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:101187 MGI:2141505
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Efcab4b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381812 MGI:2685919
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prmt8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381813 MGI:3043083
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tspan11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68498 MGI:1915748
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tspan9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109246 MGI:1924558
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043853 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043853
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 94 mRNAs, 2834 ESTs, 23 Proteins pseudo : _no_value

name	LOC667560 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667560
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 Proteins pseudo : _no_value

name	Tead4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21679 MGI:106907
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC652986 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:652986
definition	note : ribosomal protein L18 pseudogene pseudo : _no_value

name	Tulp3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22158 MGI:1329045
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5930416I19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72440 MGI:1915315
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Foxm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14235 MGI:1347487
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nrip2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:60345 MGI:1891884
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Itfg2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:101142 MGI:1915450
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fkbp4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14228 MGI:95543
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcna5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122428 GeneID:16493 MGI:96662
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium voltage-gated channel, shaker-related subfamily, member 5 transcript_id : NM_145983.1

name	Kcna1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119395751 GeneID:16485 MGI:96654
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium voltage-gated channel, shaker-related subfamily, member 1 transcript_id : NM_010595.3

name	Kcna6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142343730 GeneID:16494 MGI:96663
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium voltage-gated channel, shaker-related, subfamily, member 6 transcript_id : NM_013568.5

name	Ndufa9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354575 GeneID:66108 MGI:1913358
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 transcript_id : NM_025358.2

name	Akap3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753025 GeneID:11642 MGI:1341149
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : A kinase (PRKA) anchor protein 3 transcript_id : NM_009650.1

name	Dyrk4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46402172 GeneID:101320 MGI:1330292
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 transcript_id : NM_207210.1

name	Rad51ap1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347569 GeneID:19362 MGI:1098224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAD51 associated protein 1 transcript_id : NM_009013.3

name	D6Wsu163e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372851 GeneID:28040 MGI:107893
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 6, Wayne State University 163, expressed transcript_id : NM_138594.3

name	Fgf6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112363075 GeneID:14177 MGI:95520
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fibroblast growth factor 6 transcript_id : NM_010204.1

name	Fgf23 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625790 GeneID:64654 MGI:1891427
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fibroblast growth factor 23 transcript_id : NM_022657.3

name	9630033F20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802664 GeneID:319801 MGI:2442752
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9630033F20 gene transcript_id : NM_177003.4

name	Ccnd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:80751174 GeneID:12444 MGI:88314
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin D2 transcript_id : NM_009829.3

name	EG243642 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149255334 GeneID:243642 MGI:3647516
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 620 ESTs, 8 Proteins product : predicted gene, EG243642 transcript_id : XM_145024.8

name	LOC100043578 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149255336 GeneID:100043578
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043578 transcript_id : XM_001480445.1

name	EG640703 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149255338 GeneID:640703 MGI:3644558
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 451 ESTs, 78 Proteins product : predicted gene, EG640703 transcript_id : XM_990939.2

name	Parp11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130650 GeneID:101187 MGI:2141505
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : poly (ADP-ribose) polymerase family, member 11 transcript_id : NM_181402.3

name	Efcab4b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802883 GeneID:381812 MGI:2685919
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EF-hand calcium binding domain 4B transcript_id : NM_001033464.2

name	Prmt8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41235766 GeneID:381813 MGI:3043083
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein arginine N-methyltransferase 8 transcript_id : NM_201371.1

name	Tspan11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133893231 GeneID:68498 MGI:1915748
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tetraspanin 11 transcript_id : NM_026743.3

name	Tspan9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129877 GeneID:109246 MGI:1924558
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tetraspanin 9 transcript_id : NM_175414.4

name	Tead4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124430567 GeneID:21679 MGI:106907
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TEA domain family member 4 transcript_id : NM_001080979.1

name	Tead4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124430565 GeneID:21679 MGI:106907
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TEA domain family member 4 transcript_id : NM_011567.2

name	Tulp3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125490352 GeneID:22158 MGI:1329045
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tubby-like protein 3 transcript_id : NM_011657.2

name	5930416I19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:37574051 GeneID:72440 MGI:1915315
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5930416I19 gene transcript_id : NM_197981.1

name	Foxm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124517696 GeneID:14235 MGI:1347487
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead box M1 transcript_id : NM_008021.4

name	Nrip2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33468976 GeneID:60345 MGI:1891884
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor interacting protein 2 transcript_id : NM_021717.1

name	Itfg2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19527141 GeneID:101142 MGI:1915450
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : integrin alpha FG-GAP repeat containing 2 transcript_id : NM_133927.1

name	Fkbp4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129940 GeneID:14228 MGI:95543
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FK506 binding protein 4 transcript_id : NM_010219.3

name	Kcna5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122429 CCDS:CCDS20554.1 GeneID:16493 MGI:96662
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0005267 - potassium channel activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : potassium voltage-gated channel, shaker-related subfamily, member 5 protein_id : NP_666095.1

name	Kcna1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119395752 CCDS:CCDS20555.1 GeneID:16485 MGI:96654
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0005267 - potassium channel activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : mouse brain potassium channel protein-1; megencephaly; potassium voltage gated channel, shaker related subfamily, member 1 product : potassium voltage-gated channel subfamily A member 1 protein_id : NP_034725.3

name	Kcna6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305201 CCDS:CCDS20556.1 GeneID:16494 MGI:96663
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0005267 - potassium channel activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA] GO_process : GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : potassium voltage gated channel, shaker related, subfamily, member 6 product : potassium voltage-gated channel, shaker-related, subfamily, member 6 protein_id : NP_038596.1

name	Ndufa9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384720 CCDS:CCDS20557.1 GeneID:66108 MGI:1913358
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0050662 - coenzyme binding [Evidence IEA]; GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0003954 - NADH dehydrogenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0044237 - cellular metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 protein_id : NP_079634.1

name	Akap3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753026 CCDS:CCDS20558.1 GeneID:11642 MGI:1341149
definition	GO_component : GO:0009434 - flagellum (sensu Eukaryota) [Evidence IDA] GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0051018 - protein kinase A binding [Evidence IMP] GO_process : GO:0006928 - cell motility [Evidence IMP]; GO:0008104 - protein localization [Evidence IMP]; GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway [Evidence IPI] codon_start : 1 exception : mismatches in translation product : A-kinase anchor protein 3 protein_id : NP_033780.1

name	Dyrk4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46402173 CCDS:CCDS20559.1 GeneID:101320 MGI:1330292
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 protein_id : NP_997093.1

name	Rad51ap1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626102 GeneID:19362 MGI:1098224
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003690 - double-stranded DNA binding [Evidence ISS]; GO:0003674 - molecular_function [Evidence ND]; GO:0003723 - RNA binding [Evidence ISS] [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence ISS] GO_process : GO:0006310 - DNA recombination [Evidence IPI]; GO:0006281 - DNA repair [Evidence IEA] [Evidence ISS]; GO:0000724 - double-strand break repair via homologous recombination [Evidence ISS]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : RAD51 associated protein 1 protein_id : NP_033039.2

name	D6Wsu163e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20070406 CCDS:CCDS20560.1 GeneID:28040 MGI:107893
definition	codon_start : 1 product : hypothetical protein LOC28040 protein_id : NP_613060.1

name	Fgf6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112363076 CCDS:CCDS20561.1 GeneID:14177 MGI:95520
definition	GO_function : GO:0005104 - fibroblast growth factor receptor binding [Evidence IEA]; GO:0008083 - growth factor activity [Evidence IEA] GO_process : GO:0001525 - angiogenesis [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0008283 - cell proliferation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : fibroblast growth factor 6 protein_id : NP_034334.1

name	Fgf23 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12083589 CCDS:CCDS20562.1 GeneID:64654 MGI:1891427
definition	GO_function : GO:0005104 - fibroblast growth factor receptor binding [Evidence TAS]; GO:0008083 - growth factor activity [Evidence TAS] GO_process : GO:0030643 - phosphate ion homeostasis [Evidence IMP]; GO:0030500 - regulation of bone mineralization [Evidence IMP] codon_start : 1 product : fibroblast growth factor 23 protein_id : NP_073148.1

name	9630033F20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28892859 CCDS:CCDS20563.1 GeneID:319801 MGI:2442752
definition	GO_function : GO:0016853 - isomerase activity [Evidence IEA] codon_start : 1 product : RIKEN cDNA 9630033F20 gene protein_id : NP_795977.1

name	Ccnd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753310 CCDS:CCDS20564.1 GeneID:12444 MGI:88314
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016538 - cyclin-dependent protein kinase regulator activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA] [Evidence IMP] codon_start : 1 product : cyclin D2 protein_id : NP_033959.1

name	EG243642 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149255335 GeneID:243642 MGI:3647516
definition	codon_start : 1 product : hypothetical protein protein_id : XP_145024.7

name	LOC100043578 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149255337 GeneID:100043578
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480495.1

name	EG640703 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149255339 GeneID:640703 MGI:3644558
definition	codon_start : 1 product : similar to calmodulin protein_id : XP_996033.2

name	Parp11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31088906 CCDS:CCDS20565.1 GeneID:101187 MGI:2141505
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003950 - NAD+ ADP-ribosyltransferase activity [Evidence IEA] GO_process : GO:0006471 - protein amino acid ADP-ribosylation [Evidence IEA] codon_start : 1 product : poly (ADP-ribose) polymerase family, member 11 protein_id : NP_852067.1

name	Efcab4b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701989 CCDS:CCDS20566.1 GeneID:381812 MGI:2685919
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 product : EF-hand calcium binding domain 4B protein_id : NP_001028636.1

name	Prmt8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41235767 GeneID:381813 MGI:3043083
definition	GO_component : GO:0005634 - nucleus [Evidence ISS]; GO:0005886 - plasma membrane [Evidence ISS] GO_function : GO:0008469 - histone-arginine N-methyltransferase activity [Evidence ISS]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0042803 - protein homodimerization activity [Evidence ISS]; GO:0035241 - protein-arginine omega-N monomethyltransferase activity [Evidence ISS]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0016571 - histone methylation [Evidence ISS]; GO:0018216 - peptidyl-arginine methylation [Evidence ISS]; GO:0019919 - peptidyl-arginine methylation, to asymmetrical-dimethyl arginine [Evidence ISS]; GO:0043393 - regulation of protein binding [Evidence ISS] codon_start : 1 note : HMT1 hnRNP methyltransferase-like 3; protein arginine N-methyltransferase 4 product : heterogeneous nuclear ribonucleoprotein methyltransferase-like 4 protein_id : NP_958759.1

name	Tspan11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22507385 CCDS:CCDS20567.1 GeneID:68498 MGI:1915748
definition	codon_start : 1 product : tetraspanin 11 protein_id : NP_081019.1

name	Tspan9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30425124 CCDS:CCDS20568.1 GeneID:109246 MGI:1924558
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : tetraspan NET-5 protein_id : NP_780623.1

name	Tead4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:148352316 GeneID:21679 MGI:106907
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IGI] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : alternative start codon note : isoform b is encoded by transcript variant 2; FGF-regulated 19; ETF-related factor-2; TEF-1-related factor product : TEA domain family member 4 isoform b protein_id : NP_001074448.2 transl_except : (pos:complement(128221088..128221090),aa:Met)

name	Tead4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:148352315 GeneID:21679 MGI:106907
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IGI] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : alternative start codon note : isoform a is encoded by transcript variant 1; FGF-regulated 19; ETF-related factor-2; TEF-1-related factor product : TEA domain family member 4 isoform a protein_id : NP_035697.3 transl_except : (pos:complement(128221088..128221090),aa:Met)

name	Tulp3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755905 GeneID:22158 MGI:1329045
definition	codon_start : 1 product : tubby-like protein 3 protein_id : NP_035787.1

name	5930416I19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37574052 GeneID:72440 MGI:1915315
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC72440 protein_id : NP_932098.1

name	Foxm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124517697 CCDS:CCDS20570.1 GeneID:14235 MGI:1347487
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence ISS] [Evidence IEA] [Evidence IDA] GO_process : GO:0007049 - cell cycle [Evidence ISS]; GO:0001889 - liver development [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IMP]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0001558 - regulation of cell growth [Evidence ISS]; GO:0042127 - regulation of cell proliferation [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0001570 - vasculogenesis [Evidence IMP] codon_start : 1 note : trident; forkhead homolog 16 product : forkhead box M1 protein_id : NP_032047.4

name	Nrip2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33468977 CCDS:CCDS20571.1 GeneID:60345 MGI:1891884
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IDA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA] codon_start : 1 exception : mismatches in translation function : nuclear receptor interacting protein note : neuronal interacting factor 1 product : nuclear receptor interacting protein 2 protein_id : NP_068363.1

name	Itfg2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527142 CCDS:CCDS20572.1 GeneID:101142 MGI:1915450
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007229 - integrin-mediated signaling pathway [Evidence IEA] codon_start : 1 product : integrin alpha FG-GAP repeat containing 2 protein_id : NP_598688.1

name	Fkbp4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753882 CCDS:CCDS20573.1 GeneID:14228 MGI:95543
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IDA]; GO:0005488 - binding [Evidence IEA]; GO:0035259 - glucocorticoid receptor binding [Evidence IDA]; GO:0005525 - GTP binding [Evidence IDA]; GO:0031072 - heat shock protein binding [Evidence IDA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051219 - phosphoprotein binding [Evidence IDA] GO_process : GO:0007566 - embryo implantation [Evidence IMP]; GO:0046661 - male sex differentiation [Evidence IMP]; GO:0031503 - protein complex localization [Evidence IDA]; GO:0006457 - protein folding [Evidence IEA]; GO:0006463 - steroid hormone receptor complex assembly [Evidence IDA] codon_start : 1 product : FK506 binding protein 4 protein_id : NP_034349.1

name	LOC667427 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667427
definition	number : 1 pseudo : _no_value

name	LOC100043567 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043567
definition	number : 3 pseudo : _no_value

name	LOC100043567 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043567
definition	number : 2 pseudo : _no_value

name	LOC100043567 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043567
definition	number : 1 pseudo : _no_value

name	LOC667463 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667463
definition	number : 9 pseudo : _no_value

name	LOC667463 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667463
definition	number : 8 pseudo : _no_value

name	LOC667463 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667463
definition	number : 7 pseudo : _no_value

name	LOC667463 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667463
definition	number : 6 pseudo : _no_value

name	LOC667463 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667463
definition	number : 5 pseudo : _no_value

name	LOC667463 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667463
definition	number : 4 pseudo : _no_value

name	LOC667463 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667463
definition	number : 3 pseudo : _no_value

name	LOC667463 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667463
definition	number : 2 pseudo : _no_value

name	LOC667463 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667463
definition	number : 1 pseudo : _no_value

name	LOC667473 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667473
definition	number : 2 pseudo : _no_value

name	LOC667473 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667473
definition	number : 1 pseudo : _no_value

name	LOC667560 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667560
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:142636
definition	standard_name : D6Tem4

name	(CDS detail)
type	STS
link
xref	UniSTS:159573
definition	standard_name : L22218

name	(CDS detail)
type	STS
link
xref	UniSTS:498332
definition	standard_name : Kcna5

name	(CDS detail)
type	STS
link
xref	UniSTS:463210
definition	standard_name : Kcna5

name	(CDS detail)
type	STS
link
xref	UniSTS:142633
definition	standard_name : D6Tem1

name	(CDS detail)
type	STS
link
xref	UniSTS:142956
definition	standard_name : EC84RL

name	(CDS detail)
type	STS
link
xref	UniSTS:71596
definition	standard_name : RH11273

name	(CDS detail)
type	STS
link
xref	UniSTS:215006
definition	standard_name : RH131723

name	(CDS detail)
type	STS
link
xref	UniSTS:75451
definition	standard_name : RH70531

name	(CDS detail)
type	STS
link
xref	UniSTS:224835
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:143651
definition	standard_name : Kcna1

name	(CDS detail)
type	STS
link
xref	UniSTS:157228
definition	standard_name : GDB:435453

name	(CDS detail)
type	STS
link
xref	UniSTS:143652
definition	standard_name : Kcna1

name	(CDS detail)
type	STS
link
xref	UniSTS:271947
definition	standard_name : PMC20739P2

name	(CDS detail)
type	STS
link
xref	UniSTS:271948
definition	standard_name : PMC20739P3

name	(CDS detail)
type	STS
link
xref	UniSTS:165489
definition	standard_name : AI840627

name	(CDS detail)
type	STS
link
xref	UniSTS:142635
definition	standard_name : D6Tem3

name	(CDS detail)
type	STS
link
xref	UniSTS:142634
definition	standard_name : D6Tem2

name	(CDS detail)
type	STS
link
xref	UniSTS:143653
definition	standard_name : Kcna6

name	(CDS detail)
type	STS
link
xref	UniSTS:159575
definition	standard_name : 06.MMHAP25FLB3.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:179468
definition	standard_name : AW049118

name	(CDS detail)
type	STS
link
xref	UniSTS:235557
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:161454
definition	standard_name : RH124632

name	(CDS detail)
type	STS
link
xref	UniSTS:142651
definition	standard_name : D6Wsu163e

name	(CDS detail)
type	STS
link
xref	UniSTS:156193
definition	standard_name : GDB:214840

name	(CDS detail)
type	STS
link
xref	UniSTS:143094
definition	standard_name : Fgf6

name	(CDS detail)
type	STS
link
xref	UniSTS:125000
definition	standard_name : M92416

name	(CDS detail)
type	STS
link
xref	UniSTS:159574
definition	standard_name : M92416

name	(CDS detail)
type	STS
link
xref	UniSTS:142642
definition	standard_name : D6Uwa1

name	(CDS detail)
type	STS
link
xref	UniSTS:130763
definition	standard_name : D6Mit218

name	(CDS detail)
type	STS
link
xref	UniSTS:165491
definition	standard_name : AI595337

name	(CDS detail)
type	STS
link
xref	UniSTS:208032
definition	standard_name : RH126720

name	(CDS detail)
type	STS
link
xref	UniSTS:208031
definition	standard_name : C85509

name	(CDS detail)
type	STS
link
xref	UniSTS:235559
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:235558
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:210096
definition	standard_name : RH136101

name	(CDS detail)
type	STS
link
xref	UniSTS:208030
definition	standard_name : C86853

name	(CDS detail)
type	STS
link
xref	UniSTS:141259
definition	standard_name : Ccnd2

name	(CDS detail)
type	STS
link
xref	UniSTS:130677
definition	standard_name : D6Mit133

name	(CDS detail)
type	STS
link
xref	UniSTS:165490
definition	standard_name : AI851877

name	(CDS detail)
type	STS
link
xref	UniSTS:130889
definition	standard_name : D6Mit335

name	(CDS detail)
type	STS
link
xref	UniSTS:130922
definition	standard_name : D6Mit368

name	(CDS detail)
type	STS
link
xref	UniSTS:123777
definition	standard_name : 27.MMHAP24FLA6.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:124176
definition	standard_name : 36.MMHAP26FLD6.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:125450
definition	standard_name : MHAa97a7.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:130954
definition	standard_name : D6Mit52

name	(CDS detail)
type	STS
link
xref	UniSTS:130891
definition	standard_name : D6Mit337

name	(CDS detail)
type	STS
link
xref	UniSTS:142592
definition	standard_name : D6Mit377

name	(CDS detail)
type	STS
link
xref	UniSTS:165492
definition	standard_name : AU067806

name	(CDS detail)
type	STS
link
xref	UniSTS:210216
definition	standard_name : RH136222

name	(CDS detail)
type	STS
link
xref	UniSTS:130737
definition	standard_name : D6Mit194

name	(CDS detail)
type	STS
link
xref	UniSTS:235560
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:179469
definition	standard_name : D87966

name	(CDS detail)
type	STS
link
xref	UniSTS:124888
definition	standard_name : L26343

name	(CDS detail)
type	STS
link
xref	UniSTS:124241
definition	standard_name : 37.MMHAP65FLE4.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:257787
definition	standard_name : px-42h6

name	(CDS detail)
type	STS
link
xref	UniSTS:209708
definition	standard_name : RH126589

name	(CDS detail)
type	STS
link
xref	UniSTS:162960
definition	standard_name : RH126252

name	(CDS detail)
type	STS
link
xref	UniSTS:270887
definition	standard_name : PMC139238P1

name	(CDS detail)
type	STS
link
xref	UniSTS:185685
definition	standard_name : BB238854

name	(CDS detail)
type	STS
link
xref	UniSTS:159577
definition	standard_name : Y11245

name	(CDS detail)
type	STS
link
xref	UniSTS:179479
definition	standard_name : AW554517

name	(CDS detail)
type	STS
link
xref	UniSTS:161520
definition	standard_name : RH124698

name	(CDS detail)
type	STS
link
xref	UniSTS:162540
definition	standard_name : RH125794

name	(CDS detail)
type	STS
link
xref	UniSTS:179471
definition	standard_name : AW491344

name	(CDS detail)
type	STS
link
xref	UniSTS:179472
definition	standard_name : AI646725

name	(CDS detail)
type	STS
link
xref	UniSTS:224369
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:179470
definition	standard_name : AW208983

name	(CDS detail)
type	STS
link
xref	UniSTS:235561
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:162174
definition	standard_name : RH125352

name	LOC624256 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149255428 GeneID:624256
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 2 Proteins product : similar to small nuclear ribonucleoprotein E pseudo : _no_value transcript_id : XR_034994.1

name	LOC100043848 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149255429 GeneID:100043848
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 315 ESTs, 12 Proteins product : similar to high mobility group protein pseudo : _no_value transcript_id : XR_034996.1

name	LOC100043853 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149255430 GeneID:100043853
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 94 mRNAs, 2834 ESTs, 23 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudo : _no_value transcript_id : XR_034999.1

clone name	MSMg01-372O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-202C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481O24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-292F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-212B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328C16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-505C11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-500F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-190E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257N17
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-245H11.b	B6Ng01-245H11.g
ACC	GA054343	GA054344
length	1,141	825
definition	B6Ng01-245H11.b	B6Ng01-245H11.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(127,283,779 - 127,284,927)	(127,395,614 - 127,396,438)
sequence	gaattcctccctatggaagggccttcgaagccattgtcctcatcccccat ctccatttccttccaggaaaatgtgtatgctggatcggaaagcccagctc ttaccaccacagtagctctctatcccttcatgttacgatgaaccccacta cctccatgcaattatttcattactacttcataactaacttttgctactat aaatgtaaatatcgcaatgtaaatatctaatatgcaggatatctgatatg cacccccctaaaaggttctcgacctacagtttgagaacttctgttctacc agcacctaaggagactggtaggtatttggtacgctcatttccctccggtc tggattacagagtacccatgggtccgtggggctgtaaggctgaccaatgc agcaaattttctcgcaatctttcccttctggaaaatctactggttatctc atgtcgctacctgcttgagatgtctggtaagggtgtcttggcctttgtct tggactaagtgctcaggaagagataactcctggcctctcgggtgctcact gtgtttacactaggtgtttgccacctgcagtctggactctgggcaaagca ggtagagagggtgtggtgagcggggcattttccgttttacaggttcttcg catgtgaccccatgtcactgacgccttgccaggttctgctcacaggctat gggccaatcttgctctctccagcgtatagttcagtctgagccctagtcat gctcctaagtctgtttcactttcaatttctggggaaacacaccacacaca cacacacacacacacacacacacacacacacacacacacacacacaccct cagagagagggtaggggcacctgagctacctcaaggctacagagagaaat aaatcacctgctctctgagtgtgacctcagaagtcatgagacttgcaaac tggaaaggttatgtgtttctgcattccggaaagatgcccatctttttaga tccaatactttccttggatccctctttttcgggggggggttcgaagacag tattctctgtatagctctgctgacttagaaactacttgtagacagcctgc ctcgaactcagaaatctgcctgccttgccctccaatgctgg	gaattcctgcagttttggatggacaggcctagcttttgtgaaggtcatgt ccaaaggaccctgctgtccatgttgctttatccaggatggtgggaataat aattctaatgtgtacttaagagtaaagctttaacaacttaaactagaagt cccttaaaaacagttaggtgatcagaaacaatctgtcaaaatcagaggta ggtggtcaggagcatttgctgggctactatgagcaaaggtgatgagtctt gtattctgacataggatgtcaatagactcgggtagtaagattactttaat gtacaatggaattgtttggaggttctttgatagatggttcactgtttgat ctatgaccgccaaccaaggtctgataccctaacatctgaggacaaatctg ggattagaaaggagtttgccagtcctcagtctccttccctgaacctacgt gaaactcctcattacaagtctcccccaccaccaccacaattcaatctgtt taaactctttcagacatgaaaactgcccactcggagaagcaagtagtcca ctgagtttctagatgtctccaagagctagaatgttcttccttagaaccaa agtgttacagccttgccaacattttatgtttctatgactggggccaaact atgattagctttcataagattatgccacactgatttttctttggaactgt tggtcaactaaaactccgatgtcattcatgtgactgtcctgacaagaact gttcccattgttgtatatgaaatccactgaaagtgtgtgtgtctttgtgt gtgtgtgtgtgtgtgtgtgtgcgcg
quality values	Open. Hide. 49 17 33 29 58 54 54 58 54 58 58 54 51 58 58 58 38 54 39 49 41 43 62 62 62 62 62 48 62 56 29 27 15 19 19 28 19 20 30 30 21 24 62 56 62 62 62 47 47 62 62 62 62 47 44 62 62 62 62 62 62 62 62 59 43 62 62 59 62 62 62 59 62 62 62 44 50 44 38 33 38 56 62 59 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 59 62 62 62 62 62 62 62 46 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 59 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 54 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 47 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 54 34 54 54 62 62 62 62 62 62 62 62 62 54 62 47 46 62 62 62 62 62 62 46 48 62 62 62 62 62 62 62 62 62 62 52 54 35 62 52 62 52 62 58 54 54 46 52 42 58 58 46 52 58 48 42 42 58 54 54 54 54 54 54 58 58 58 58 58 54 54 52 54 58 58 52 58 58 58 54 49 36 54 58 54 54 52 58 58 52 54 53 58 54 58 54 58 54 58 52 58 58 54 52 54 46 54 58 58 58 54 52 52 58 52 58 58 54 54 48 58 52 54 58 58 58 54 58 58 54 41 49 50 30 51 46 50 46 58 48 47 42 58 47 50 49 41 58 51 53 51 58 34 48 50 51 54 58 48 47 42 58 58 50 35 54 46 53 58 51 50 39 52 40 35 58 40 54 52 53 52 53 29 53 50 52 53 53 51 19 16 50 50 51 26 52 51 52 35 39 41 51 51 43 46 31 40 42 41 47 48 49 46 32 42 50 40 46 49 51 51 35 51 42 32 40 32 39 58 35 50 52 41 58 50 37 40 50 26 41 52 52 37 58 58 53 53 50 37 32 50 25 19 11 9 19 30 39 49 38 40 34 32 50 37 39 18 37 49 47 41 54 23 51 54 39 37 39 15 31 39 32 42 52 38 53 34 53 37 52 37 29 38 33 42 41 29 54 44 22 21 27 38 54 39 38 33 40 39 54 33 39 37 49 54 54 31 26 54 38 27 44 38 39 30 28 23 32 34 32 30 51 29 53 27 52 18 42 24 31 21 29 17 27 16 34 24 32 32 32 25 32 13 41 23 42 27 45 32 41 26 45 17 29 20 40 30 42 16 51 22 34 9 41 20 37 10 27 20 31 19 19 39 8 25 10 25 15 45 31 26 24 46 42 25 26 42 46 46 41 27 23 30 32 38 31 32 8 25 23 24 34 34 31 31 26 10 23 26 8 31 21 31 24 16 37 25 43 22 14 32 6 39 11 39 14 31 30 21 29 15 16 35 31 31 14 18 21 30 24 36 14 31 26 22 26 29 26 31 31 33 9 6 27 44 16 27 17 9 26 25 34 17 34 23 25 22 15 24 25 37 31 13 16 11 8 36 41 25 5 9 9 7 7 21 12 4 14 10 31 7 21 18 28 27 21 33 31 6 20 17 17 34 48 32 14 26 22 27 24 48 33 14 14 19 8 39 32 31 7 27 6 27 28 9 11 29 8 24 24 15 15 30 27 15 6 19 23 5 5 20 7 17 34 3 3 6 4 7 3 17 3 3 3 30 25 22 15 26 18 31 4 3 4 14 8 11 11 6 16 19 11 8 6 27 14 20 6 5 4 7 8 15 6 16 10 4 5 3 6 14 11 11 3 1 3 3 5 4 9 4 18 22 5 6 23 8 8 17 18 6 6 4 4 14 10 7 6 4 5 5 17 4 4 8 6 6 17 11 7 16 7 21 5 25 30 17 6 8 12 6 11 11 15 14 16 16 12 6 8 10 4 4 4 4 5 2 14 5 10 15 12 18 7	Open. Hide. 62 59 51 44 62 62 62 62 62 59 34 34 32 34 32 48 56 33 54 46 62 62 59 59 59 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 59 62 62 59 59 62 59 62 59 62 59 59 62 59 62 62 62 62 62 62 59 62 62 62 59 59 59 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 54 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 62 62 62 62 62 62 62 62 52 48 52 62 62 62 58 58 58 54 58 58 58 58 58 58 52 54 52 43 54 54 54 58 58 52 58 58 52 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 54 58 58 58 54 54 54 54 58 47 58 58 58 58 58 44 40 58 54 51 50 58 58 51 47 58 51 58 58 42 58 51 51 51 50 48 50 51 51 40 54 51 50 45 39 51 58 51 54 58 58 49 50 49 52 50 51 58 58 49 58 54 50 41 35 39 50 53 58 58 54 51 51 58 58 58 54 53 53 53 50 58 51 40 54 58 58 49 58 43 43 43 54 44 49 51 58 58 51 39 30 41 47 50 58 54 54 49 45 34 53 47 54 42 41 30 47 53 41 54 51 38 32 49 49 51 54 51 38 49 54 54 54 38 53 52 54 49 54 40 35 36 41 42 54 52 52 46 46 40 52 40 53 42 41 26 54 51 40 44 47 38 54 27 37 37 53 52 52 31 51 41 40 34 53 53 53 53 47 30 32 38 31 19 9 27 45 30 32 37 46 34 46 25 27 31 51 30 30 23 41 29 31 41 51 45 31 51 51 32 31 31 42 43 31 51 51 41 30 32 42 39 30 45 42 46 47 27 20 23 46 38 46 41 46 32 46 30 46 22 41 46 33 40 46 41 46 32 46 31 46 41 46 40 46 30 46 31 35 24 46 17 46 27 46 18 41 29 36 25 11

Alignment Information

BAC End 1

BAC End 2

seq1: chr6_127283779_127284927
seq2: B6Ng01-245H11.b_49_1189

seq1  GAATTCCTCCCTATGGAAGGGCCTTCGAAGCCATTGTCCTCATCCCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCTATGGAAGGGCCTTCGAAGCCATTGTCCTCATCCCCCAT  50

seq1  CTCCATTTCCTTCCAGGAAAATGTGTATGCTGGATCGGAAAGCCCAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTCCTTCCAGGAAAATGTGTATGCTGGATCGGAAAGCCCAGCTC  100

seq1  TTACCACCACAGTAGCTCTCTATCCCTTCATGTTACGATGAACCCCACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACCACAGTAGCTCTCTATCCCTTCATGTTACGATGAACCCCACTA  150

seq1  CCTCCATGCAATTATTTCATTACTACTTCATAACTAACTTTTGCTACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGCAATTATTTCATTACTACTTCATAACTAACTTTTGCTACTAT  200

seq1  AAATGTAAATATCGCAATGTAAATATCTAATATGCAGGATATCTGATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAATATCGCAATGTAAATATCTAATATGCAGGATATCTGATATG  250

seq1  CACCCCCCTAAAAGGTTCTCGACCTACAGTTTGAGAACTTCTGTTCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCTAAAAGGTTCTCGACCTACAGTTTGAGAACTTCTGTTCTACC  300

seq1  AGCACCTAAGGAGACTGGTAGGTATTTGGTACGCTCATTTCCCTCCGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTAAGGAGACTGGTAGGTATTTGGTACGCTCATTTCCCTCCGGTC  350

seq1  TGGATTACAGAGTACCCATGGGTCCGTGGGGCTGTAAGGCTGACCAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTACAGAGTACCCATGGGTCCGTGGGGCTGTAAGGCTGACCAATGC  400

seq1  AGCAAATTTTCTCGCAATCTTTCCCTTCTGGAAAATCTACTGGTTATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTTTCTCGCAATCTTTCCCTTCTGGAAAATCTACTGGTTATCTC  450

seq1  ATGTCGCTACCTGCTTGAGATGTCTGGTAAGGGTGTCTTGGCCTTTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGCTACCTGCTTGAGATGTCTGGTAAGGGTGTCTTGGCCTTTGTCT  500

seq1  TGGACTAAGTGCTCAGGAAGAGATAACTCCTGGCCTCTCGGGTGCTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTAAGTGCTCAGGAAGAGATAACTCCTGGCCTCTCGGGTGCTCACT  550

seq1  GTGTTTACACTAGGTGTTTGCCACCTGCAGTCTGGACTCTGGGCAAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTACACTAGGTGTTTGCCACCTGCAGTCTGGACTCTGGGCAAAGCA  600

seq1  GGTAGAGAGGGTGTGGTGAGCGGGGCATTTTCCGTTTTACAGGTTCTTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGAGGGTGTGGTGAGCGGGGCATTTTCCGTTTTACAGGTTCTTCG  650

seq1  CATGTGACCCCATGTCACTGACGCCTTGCCAGGTTCTGCTCACAGGCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGACCCCATGTCACTGACGCCTTGCCAGGTTCTGCTCACAGGCTAT  700

seq1  GGGCCAATCTTGCTCTCTCCAGCGTATAGTTCAGTCTGAGCCCTAGTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAATCTTGCTCTCTCCAGCGTATAGTTCAGTCTGAGCCCTAGTCAT  750

seq1  GCTCCTAAGTCTGTTTCACTTTCAATTTCTGGGGAAACACACCACACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTAAGTCTGTTTCACTTTCAATTTCTGGGGAAACACACCACACACA  800

seq1  CACACACACACACACACACACACACACACACACACACACACACACACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CACACACACACACACACACACACACACACACACACACACACACACACCCT  850

seq1  CAGAGAGAGGGTAGGGGCACCTGAGCTACCTCAAGGCTACAGAGAG-AAT  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGAGAGAGGGTAGGGGCACCTGAGCTACCTCAAGGCTACAGAGAGAAAT  900

seq1  TAATCACCTGCTCTCTGAGTGTGACCTCAGAAGTCATGAGACTTGCAAAC  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACCTGCTCTCTGAGTGTGACCTCAGAAGTCATGAGACTTGCAAAC  950

seq1  TGAAAAGG-TATGTG-TTCTGCATTTCGGAAAGATGCCCATCTTTTAAGA  997
      || ||||| |||||| ||||||||| |||||||||||||||||||| |||
seq2  TGGAAAGGTTATGTGTTTCTGCATTCCGGAAAGATGCCCATCTTTTTAGA  1000

seq1  TTCAATACTTTCTTTGAATCCCCTTCTTTTTTTGGGGGGGGGGGTTCG-A  1046
      | |||||||||| ||| |||||  |||||||    ||||||||||||| |
seq2  TCCAATACTTTCCTTGGATCCC--TCTTTTT---CGGGGGGGGGTTCGAA  1045

seq1  GACAGGATTTCTCTGTATAGCCCTGGCTGTCCTAGAACTTACTTTGTAGA  1096
      ||||| | ||||||||||||| || |||| | |||||  ||| |||||||
seq2  GACAGTA-TTCTCTGTATAGCTCT-GCTGACTTAGAAACTAC-TTGTAGA  1092

seq1  CCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAATGC  1146
       ||| || |||||||||||||||||||||||||||   |||||  |||||
seq2  -CAGCCT-GCCTCGAACTCAGAAATCTGCCTGCCTTGCCCTCC--AATGC  1138

seq1  TGG  1149
      |||
seq2  TGG  1141

seq1: chr6_127395614_127396438
seq2: B6Ng01-245H11.g_66_890 (reverse)

seq1  CGCGCACACACACACACACACACACACACAAAGACACACACACTTTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCACACACACACACACACACACACACAAAGACACACACACTTTCAGT  50

seq1  GGATTTCATATACAACAATGGGAACAGTTCTTGTCAGGACAGTCACATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCATATACAACAATGGGAACAGTTCTTGTCAGGACAGTCACATGA  100

seq1  ATGACATCGGAGTTTTAGTTGACCAACAGTTCCAAAGAAAAATCAGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATCGGAGTTTTAGTTGACCAACAGTTCCAAAGAAAAATCAGTGTG  150

seq1  GCATAATCTTATGAAAGCTAATCATAGTTTGGCCCCAGTCATAGAAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATCTTATGAAAGCTAATCATAGTTTGGCCCCAGTCATAGAAACAT  200

seq1  AAAATGTTGGCAAGGCTGTAACACTTTGGTTCTAAGGAAGAACATTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTGGCAAGGCTGTAACACTTTGGTTCTAAGGAAGAACATTCTAG  250

seq1  CTCTTGGAGACATCTAGAAACTCAGTGGACTACTTGCTTCTCCGAGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGAGACATCTAGAAACTCAGTGGACTACTTGCTTCTCCGAGTGGG  300

seq1  CAGTTTTCATGTCTGAAAGAGTTTAAACAGATTGAATTGTGGTGGTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCATGTCTGAAAGAGTTTAAACAGATTGAATTGTGGTGGTGGTG  350

seq1  GGGGAGACTTGTAATGAGGAGTTTCACGTAGGTTCAGGGAAGGAGACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGACTTGTAATGAGGAGTTTCACGTAGGTTCAGGGAAGGAGACTGA  400

seq1  GGACTGGCAAACTCCTTTCTAATCCCAGATTTGTCCTCAGATGTTAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGCAAACTCCTTTCTAATCCCAGATTTGTCCTCAGATGTTAGGGT  450

seq1  ATCAGACCTTGGTTGGCGGTCATAGATCAAACAGTGAACCATCTATCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACCTTGGTTGGCGGTCATAGATCAAACAGTGAACCATCTATCAAA  500

seq1  GAACCTCCAAACAATTCCATTGTACATTAAAGTAATCTTACTACCCGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCCAAACAATTCCATTGTACATTAAAGTAATCTTACTACCCGAGT  550

seq1  CTATTGACATCCTATGTCAGAATACAAGACTCATCACCTTTGCTCATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGACATCCTATGTCAGAATACAAGACTCATCACCTTTGCTCATAGT  600

seq1  AGCCCAGCAAATGCTCCTGACCACCTACCTCTGATTTTGACAGATTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGCAAATGCTCCTGACCACCTACCTCTGATTTTGACAGATTGTTT  650

seq1  CTGATCACCTAACTGTTTTTAAGGGACTTCTAGTTTAAGTTGTTAAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCACCTAACTGTTTTTAAGGGACTTCTAGTTTAAGTTGTTAAAGCT  700

seq1  TTACTCTTAAGTACACATTAGAATTATTATTCCCACCATCCTGGATAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTAAGTACACATTAGAATTATTATTCCCACCATCCTGGATAAAG  750

seq1  CAACATGGACAGCAGGGTCCTTTGGACATGACCTTCACAAAAGCTAGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGGACAGCAGGGTCCTTTGGACATGACCTTCACAAAAGCTAGGCC  800

seq1  TGTCCATCCAAAACTGCAGGAATTC  825
      |||||||||||||||||||||||||
seq2  TGTCCATCCAAAACTGCAGGAATTC  825

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BAC

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Alignment Information