BAC Information

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BAC

Clone NameB6Ng01-245H16
Chromosome6 (Build37)
Map Location 18,227,651 - 18,365,679
singlet/doubletdoublet
Overlap geneCftr, Cttnbp2
Upstream geneCav2, Cav1, Met, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245H16.bB6Ng01-245H16.g
ACCGA054351GA054352
length1,112628
definitionB6Ng01-245H16.b B6Ng01-245H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,227,651 - 18,228,766)(18,365,052 - 18,365,679)
sequence
gaattctcaacaaagctaatatttgtaagttcttcgaatttctgactaga
tgataattcttattttaaatgattttgctgtgctgtgaatttaggataaa
atatattggtgtccttctaaaagtgattaatatttgagaatatttatttg
tatcacaggtgggattcttaacagattctccaaagatatagcaattttgg
atgactttctgcctcttaccatttttgacttcattcaggtttgtaaagaa
taactattatcaagtttttctatttgccataaagttttgtgaataatttc
aaaaggaagcaagtgaatttgttgctaattttccacatactagttgaagt
cctggctagtgaataagttttatgaagaacagcaatgtttaatagtcata
aatttagtgaattcagtaactagctatgtctatctatttcaggcatgccc
tggatatgatactatcctcttgaattggtttgaaaggtacaaaagacagt
tttccgcccaatcattgaccataaaatttgactcatagaacatttcttaa
gtccaacactgaaatgaaaatgaagttcctggagaggctacactctaatc
cagccatacccatgaacacttaaacacaaatttagctaagcagtttcccc
acaaaagtataacttaatggaaggatgaaaaatggattgttgaaaaaatg
tgaaggaaaagaaatatttagagcctctgaggctctcccttagtgactgc
tgtgacagacctccagggtagccatgctatggagatgactgaaagtcact
taataacaaaagaaggccattgagtggagaccaaagtgaccatgaaagca
tcacattaggactccaatgtcaaaggacttacaggagttgtaagctgata
ctcttgcctgttgaatcaggcagttttctgagctccctgttggcttcctg
aagcttcagagagctaatgcacttggagaagtagttgtacacaacatggt
ccttgtgaatgaccacagtctcatagccttgtcccttcccttctctttaa
atagtactgcatctctgaaacttggaaaaatgtgtactaatggccttgta
tgtatacacaca
gaattctgcacagcactgtgggattaggcctgtagcagtgctagatgcca
ttatccttgtggccccatcctccatacttccctcaagaagaaggcagcac
ttaacatatgatgtcccggtgccctacccaccagtaaggacgaagcgatc
cactctgaagtcaggcatcaaagagtcatactttgagagacttgcaaata
tgtgttatagctctctatcagttttaaaaaataatttagtaacatcacct
aaattatctttagactagtatttgcggtgtgcactgataactcacctgct
aacttaattattggggatgttttctcactggcaatgactatgttgactat
agtaaattacaaaatgtgaagttctacaccaagagtagagaaggctttgc
agagtgtctcattggctgtgctgcaaggtgcctgaatgcatgctgcttga
cagtcattaaagaccgagggctggggaggaaaggcagttgctggcacatg
caaagccccaagttccatcctacagaaagaggagaaggaagaaaatattt
cacaggtacagatatttcagttccagcaactcaaatacacgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18227651_18228766
seq2: B6Ng01-245H16.b_47_1158

seq1  GAATTCTCAACAAAGCTAATATTTGTAAGTTCTT-GAATTTCTGACTAGA  49
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAATTCTCAACAAAGCTAATATTTGTAAGTTCTTCGAATTTCTGACTAGA  50

seq1  TGATAATTCTTATTTTAAATGATTTTGCTGTGCTGTGAATTTAGGATAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTCTTATTTTAAATGATTTTGCTGTGCTGTGAATTTAGGATAAA  100

seq1  ATATATTGGTGTCCTTCTAAAAGTGATTAATATTTGAGAATATTTATTTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGGTGTCCTTCTAAAAGTGATTAATATTTGAGAATATTTATTTG  150

seq1  TATCACAGGTGGGATTCTTAACAGATTCTCCAAAGATATAGCAATTTTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGGTGGGATTCTTAACAGATTCTCCAAAGATATAGCAATTTTGG  200

seq1  ATGACTTTCTGCCTCTTACCATTTTTGACTTCATTCAGGTTTGTAAAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTCTGCCTCTTACCATTTTTGACTTCATTCAGGTTTGTAAAGAA  250

seq1  TAACTATTATCAAGTTTTTCTATTTGCCATAAAGTTTTGTGAATAATTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATTATCAAGTTTTTCTATTTGCCATAAAGTTTTGTGAATAATTTC  300

seq1  AAAAGGAAGCAAGTGAATTTGTTGCTAATTTTCCACATACTAGTTGAAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGCAAGTGAATTTGTTGCTAATTTTCCACATACTAGTTGAAGT  350

seq1  CCTGGCTAGTGAATAAGTTTTATGAAGAACAGCAATGTTTAATAGTCATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTAGTGAATAAGTTTTATGAAGAACAGCAATGTTTAATAGTCATA  400

seq1  AATTTAGTGAATTCAGTAACTAGCTATGTCTATCTATTTCAGGCATGCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGTGAATTCAGTAACTAGCTATGTCTATCTATTTCAGGCATGCCC  450

seq1  TGGATATGATACTATCCTCTTGAATTGGTTTGAAAGGTACAAAAGACAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGATACTATCCTCTTGAATTGGTTTGAAAGGTACAAAAGACAGT  500

seq1  TTTCCGCCCAATCATTGACCATAAAATTTGACTCATAGAACATTTCTTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGCCCAATCATTGACCATAAAATTTGACTCATAGAACATTTCTTAA  550

seq1  GTCCAACACTGAAATGAAAATGAAGTTCCTGGAGAGGCTACACTCTAATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAACACTGAAATGAAAATGAAGTTCCTGGAGAGGCTACACTCTAATC  600

seq1  CAGCCATACCCATGAACACTTAAACACAAATTTAGCTAAGCAGTTTCCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATACCCATGAACACTTAAACACAAATTTAGCTAAGCAGTTTCCCC  650

seq1  ACAAAAGTATAACTTAATGGAAGGATGAAAAATGGATTGTTGAAAAAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTATAACTTAATGGAAGGATGAAAAATGGATTGTTGAAAAAATG  700

seq1  TGAAGGAAAAGAAATATTTAGAGCCTCTGAGGCTCTCCCTTAGTGACTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAAAAGAAATATTTAGAGCCTCTGAGGCTCTCCCTTAGTGACTGC  750

seq1  TGTGACAGACCTCCAGGGTAGCCATGCTATGGAGATGACTGAAAGTCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGACCTCCAGGGTAGCCATGCTATGGAGATGACTGAAAGTCACT  800

seq1  TAATAACAAAAGAAGGCCATTGAGTGGAGACCAAAGTGACCATGAAAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACAAAAGAAGGCCATTGAGTGGAGACCAAAGTGACCATGAAAGCA  850

seq1  TCACATTAGGACTCCAATGTCAAAGGACTTACAGGAGTTGTAAGCTGATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTAGGACTCCAATGTCAAAGGACTTACAGGAGTTGTAAGCTGATA  900

seq1  CTCTTGCCTGTTGAATCAGGCAGTTTTCTGAGCTCCCTGTTGGCTTCCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCTGTTGAATCAGGCAGTTTTCTGAGCTCCCTGTTGGCTTCCTG  950

seq1  AAGCTTCAGAGAGCAAATGCACTTGGAGAAGTAGTTGTAACACAACATGG  999
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  AAGCTTCAGAGAGCTAATGCACTTGGAGAAGTAGTTGT-ACACAACATGG  999

seq1  TCCTTGTTGGAATGA-CACAGTCTCATAG-CTTGTCCCTTCCCTTCTCTT  1047
      |||||||  |||||| ||||||||||||| ||||||||||||||||||||
seq2  TCCTTGT--GAATGACCACAGTCTCATAGCCTTGTCCCTTCCCTTCTCTT  1047

seq1  TAAAATAGTACTGCATCTCTGAAAACTTGGAAAAAATGTGGAACTATTGC  1097
      | ||||||||||||||||||| |||||||| |||||||| | |||| || 
seq2  T-AAATAGTACTGCATCTCTG-AAACTTGG-AAAAATGT-GTACTAATGG  1093

seq1  CCCTGTATGTATACACACA  1116
      || ||||||||||||||||
seq2  CCTTGTATGTATACACACA  1112

seq1: chr6_18365052_18365679
seq2: B6Ng01-245H16.g_65_692 (reverse)

seq1  ATACACACACACACACACACACACACACACACACACACGTGTATTTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACACACACACACACACACACACACACGTGTATTTGAGT  50

seq1  TGCTGGAACTGAAATATCTGTACCTGTGAAATATTTTCTTCCTTCTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAACTGAAATATCTGTACCTGTGAAATATTTTCTTCCTTCTCCTC  100

seq1  TTTCTGTAGGATGGAACTTGGGGCTTTGCATGTGCCAGCAACTGCCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTAGGATGGAACTTGGGGCTTTGCATGTGCCAGCAACTGCCTTTC  150

seq1  CTCCCCAGCCCTCGGTCTTTAATGACTGTCAAGCAGCATGCATTCAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGCCCTCGGTCTTTAATGACTGTCAAGCAGCATGCATTCAGGCA  200

seq1  CCTTGCAGCACAGCCAATGAGACACTCTGCAAAGCCTTCTCTACTCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGCACAGCCAATGAGACACTCTGCAAAGCCTTCTCTACTCTTGG  250

seq1  TGTAGAACTTCACATTTTGTAATTTACTATAGTCAACATAGTCATTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAACTTCACATTTTGTAATTTACTATAGTCAACATAGTCATTGCCA  300

seq1  GTGAGAAAACATCCCCAATAATTAAGTTAGCAGGTGAGTTATCAGTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAAACATCCCCAATAATTAAGTTAGCAGGTGAGTTATCAGTGCAC  350

seq1  ACCGCAAATACTAGTCTAAAGATAATTTAGGTGATGTTACTAAATTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCAAATACTAGTCTAAAGATAATTTAGGTGATGTTACTAAATTATTT  400

seq1  TTTAAAACTGATAGAGAGCTATAACACATATTTGCAAGTCTCTCAAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACTGATAGAGAGCTATAACACATATTTGCAAGTCTCTCAAAGTA  450

seq1  TGACTCTTTGATGCCTGACTTCAGAGTGGATCGCTTCGTCCTTACTGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTTTGATGCCTGACTTCAGAGTGGATCGCTTCGTCCTTACTGGTG  500

seq1  GGTAGGGCACCGGGACATCATATGTTAAGTGCTGCCTTCTTCTTGAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGCACCGGGACATCATATGTTAAGTGCTGCCTTCTTCTTGAGGGA  550

seq1  AGTATGGAGGATGGGGCCACAAGGATAATGGCATCTAGCACTGCTACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGAGGATGGGGCCACAAGGATAATGGCATCTAGCACTGCTACAGG  600

seq1  CCTAATCCCACAGTGCTGTGCAGAATTC  628
      ||||||||||||||||||||||||||||
seq2  CCTAATCCCACAGTGCTGTGCAGAATTC  628