BAC Information

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BAC

Clone NameB6Ng01-245I24
Chromosome6 (Build37)
Map Location 34,435,662 - 34,558,230
singlet/doubletdoublet
Overlap geneBpgm
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7
Downstream geneLOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245I24.bB6Ng01-245I24.g
ACCGA054413GA054414
length765994
definitionB6Ng01-245I24.b B6Ng01-245I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,557,468 - 34,558,230)(34,435,662 - 34,436,653)
sequence
gaattcttcaactataaaaggcagctccaggcccatttataagggtaaag
gaaatgggtcaggtgaagacgatcgtggaggctgtcttctgcaaagcagg
gagatccatgcttcagagacagccccagttagaatgcacgcttgccaacc
tgaatcaggatgtcctaaaacttgtatctactggtctttgtcttccttcc
tggaaagcccaaacattaaagaaatcaaccctgttcctcccatctacatg
gaggtcaaggagaagcaatatgaggaagtgtgtggcaaagagtaggggtt
agaaagagagtcacatgcctgcagagagcctccgtgggcaagcacaatag
attaccaataacgtgtagtattgtatatagtatcaaccatgttcaatgta
gtttgtaattagtacttctaacatcacatgcgctttcattggatagactc
agcagataaaactgaccatcagaggtcaaataatagcagaatatagtgag
ctaattaggaaggggtggatttttttaatataatattttaatattatata
cagaataatgagcttatatggtcagtttaaaaatactggtcatattttac
aactagttctcaaaatttcttgaaagtttaactttccaatttggggagct
actctgaacttggaaagagaggatagtgacagagagagggcatgctgggt
acaacgggaggagctaatcctttttagcttctcttcccgaaagctctgcc
ccgcccctgcccgtc
gaattcattggctggtctttcccaagcgaagctggggctttatcaatgtg
attatttcccggacatagtcacgggcaaagcactgcccaggtgacttcca
tccctttctctctttgccacctcagtggcccctaaggctgagaggacagg
cattgtgctgtcactctgcagttgcccagccatgggaggtgcttcctccc
gagcctttgttcttgtcagcattgggtgcatctctactccatatgcacca
aaagccaaacctgatgttcagcaagaaagaatgaatcctaatcctggtag
ccttccagctgcttacaaaccacttcagtcaccgctagttactcctgaag
cctcatctcattggagtgtttccccctcagactctccaggaattgcttaa
aaagagtagaatccaggtagaggccaccgaactctgtcgctggtggttat
ataactgtgggtgaatcacagcttaagcaggacagaacatctccagttac
tggaagttgccaagaatgcagaagccaggcaggccccagtcttcatataa
tctttgctccccagtgtggaaaaaacccctggggtggagatggagagtgc
cagccgagcatcgcgtgtcagtggagaagcactcttcagaggcggatgga
tgcagccggctctcccggttctccggggacagactaggcaggagctacag
cataagggagctcggacttgccttagagttgcttgtccaactttagtaga
ttctcctcacagtaatgtggctgatgtgagtcgagtttctgcagacaggg
gaggaggaggaggaggaggcaaggccgccttatcagtgtggttccctgca
ctcgcaaggacctgtttctgttattctgttcctgccgacagcattctcag
ctgtttacatttgatagcttgtttgcacccggatttatccttgcccaaca
gcaagtgaaatttgctttcatgtgactctactttcatttagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34557468_34558230
seq2: B6Ng01-245I24.b_47_811 (reverse)

seq1  GGCGGGCAGGGGCGGGGCAGAGCTTTC-GGAAGAGAAGCTAAAAAGGATT  49
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GACGGGCAGGGGCGGGGCAGAGCTTTCGGGAAGAGAAGCTAAAAAGGATT  50

seq1  AGCTCCTCCCGTTGTACCCAGCATGCCCTCTCTCTGTCACTATCCTCTCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTCCCGTTGTACCCAGCATGCCCTCTCTCTGTCACTATCCTCTCT  100

seq1  TTCCAAGTTCAGAGTAGCTCCCCAAATTGGAAAGTTAAACTTTCAAG-AA  148
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCCAAGTTCAGAGTAGCTCCCCAAATTGGAAAGTTAAACTTTCAAGAAA  150

seq1  TTTTGAGAACTAGTTGTAAAATATGACCAGTATTTTTAAACTGACCATAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAACTAGTTGTAAAATATGACCAGTATTTTTAAACTGACCATAT  200

seq1  AAGCTCATTATTCTGTATATAATATTAAAATATTATATTAAAAAAATCCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATTATTCTGTATATAATATTAAAATATTATATTAAAAAAATCCA  250

seq1  CCCCTTCCTAATTAGCTCACTATATTCTGCTATTATTTGACCTCTGATGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCTAATTAGCTCACTATATTCTGCTATTATTTGACCTCTGATGG  300

seq1  TCAGTTTTATCTGCTGAGTCTATCCAATGAAAGCGCATGTGATGTTAGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTATCTGCTGAGTCTATCCAATGAAAGCGCATGTGATGTTAGAA  350

seq1  GTACTAATTACAAACTACATTGAACATGGTTGATACTATATACAATACTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAATTACAAACTACATTGAACATGGTTGATACTATATACAATACTA  400

seq1  CACGTTATTGGTAATCTATTGTGCTTGCCCACGGAGGCTCTCTGCAGGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTATTGGTAATCTATTGTGCTTGCCCACGGAGGCTCTCTGCAGGCA  450

seq1  TGTGACTCTCTTTCTAACCCCTACTCTTTGCCACACACTTCCTCATATTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCTCTTTCTAACCCCTACTCTTTGCCACACACTTCCTCATATTG  500

seq1  CTTCTCCTTGACCTCCATGTAGATGGGAGGAACAGGGTTGATTTCTTTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTTGACCTCCATGTAGATGGGAGGAACAGGGTTGATTTCTTTAA  550

seq1  TGTTTGGGCTTTCCAGGAAGGAAGACAAAGACCAGTAGATACAAGTTTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGGCTTTCCAGGAAGGAAGACAAAGACCAGTAGATACAAGTTTTA  600

seq1  GGACATCCTGATTCAGGTTGGCAAGCGTGCATTCTAACTGGGGCTGTCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCCTGATTCAGGTTGGCAAGCGTGCATTCTAACTGGGGCTGTCTC  650

seq1  TGAAGCATGGATCTCCCTGCTTTGCAGAAGACAGCCTCCACGATCGTCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCATGGATCTCCCTGCTTTGCAGAAGACAGCCTCCACGATCGTCTT  700

seq1  CACCTGACCCATTTCCTTTACCCTTATAAATGGGCCTGGAGCTGCCTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGACCCATTTCCTTTACCCTTATAAATGGGCCTGGAGCTGCCTTTT  750

seq1  ATAGTTGAAGAATTC  763
      |||||||||||||||
seq2  ATAGTTGAAGAATTC  765

seq1: chr6_34435662_34436653
seq2: B6Ng01-245I24.g_65_1058

seq1  GAATTCATTGGCTGGTCTTTCCCAAGCGAAGCTGGGGCTTTATCAATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGCTGGTCTTTCCCAAGCGAAGCTGGGGCTTTATCAATGTG  50

seq1  ATTATTTCCCGGACATAGTCACGGGCAAAGCACTGCCCAGGTGACTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCCCGGACATAGTCACGGGCAAAGCACTGCCCAGGTGACTTCCA  100

seq1  TCCCTTTCTCTCTTTGCCACCTCAGTGGCCCCTAAGGCTGAGAGGACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTCTCTTTGCCACCTCAGTGGCCCCTAAGGCTGAGAGGACAGG  150

seq1  CATTGTGCTGTCACTCTGCAGTTGCCCAGCCATGGGAGGTGCTTCCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGCTGTCACTCTGCAGTTGCCCAGCCATGGGAGGTGCTTCCTCCC  200

seq1  GAGCCTTTGTTCTTGTCAGCATTGGGTGCATCTCTACTCCATATGCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTGTTCTTGTCAGCATTGGGTGCATCTCTACTCCATATGCACCA  250

seq1  AAAGCCAAACCTGATGTTCAGCAAGAAAGAATGAATCCTAATCCTGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAAACCTGATGTTCAGCAAGAAAGAATGAATCCTAATCCTGGTAG  300

seq1  CCTTCCAGCTGCTTACAAACCACTTCAGTCACCGCTAGTTACTCCTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGCTGCTTACAAACCACTTCAGTCACCGCTAGTTACTCCTGAAG  350

seq1  CCTCATCTCATTGGAGTGTTTCCCCCTCAGACTCTCCAGGAATTGCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTCATTGGAGTGTTTCCCCCTCAGACTCTCCAGGAATTGCTTAA  400

seq1  AAAGAGTAGAATCCAGGTAGAGGCCACCGAACTCTGTCGCTGGTGGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTAGAATCCAGGTAGAGGCCACCGAACTCTGTCGCTGGTGGTTAT  450

seq1  ATAACTGTGGGTGAATCACAGCTTAAGCAGGACAGAACATCTCCAGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGTGGGTGAATCACAGCTTAAGCAGGACAGAACATCTCCAGTTAC  500

seq1  TGGAAGTTGCCAAGAATGCAGAAGCCAGGCAGGCCCCAGTCTTCATATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTGCCAAGAATGCAGAAGCCAGGCAGGCCCCAGTCTTCATATAA  550

seq1  TCTTTGCTCCCCAGTGTGGAAAAAACCCCTGGGGTGGAGATGGAGAGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTCCCCAGTGTGGAAAAAACCCCTGGGGTGGAGATGGAGAGTGC  600

seq1  CAGCCGAGCATCGCGTGTCAGTGGAGAAGCACTCTTCAGAGGCGGATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGAGCATCGCGTGTCAGTGGAGAAGCACTCTTCAGAGGCGGATGGA  650

seq1  TGCAGCCGGCTCTCCCGGTTCTCCGGGGACAGACTAGGCAGGAGCTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCGGCTCTCCCGGTTCTCCGGGGACAGACTAGGCAGGAGCTACAG  700

seq1  CATAAGGGAGCTCGGACTTGCCTTAGAGTTGCTTGTCCAACTTTAGTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGGAGCTCGGACTTGCCTTAGAGTTGCTTGTCCAACTTTAGTAGA  750

seq1  TTCTCCTCACAGTAATGTGGCTGATGTGAGTCGAGTTTCTGCAGGACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCTCCTCACAGTAATGTGGCTGATGTGAGTCGAGTTTCTGCA-GACAGG  799

seq1  GGAGGAGGAGGAGGAGGAGGCAAGGCCGCCTTATCAGTGTGGTTCCCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAGGAGGAGGCAAGGCCGCCTTATCAGTGTGGTTCCCTGC  849

seq1  ACTCGCAAGGACCTGTTTCTGTTAATCTGTTCCTGCAGACAGCATTTCTC  900
      |||||||||||||||||||||||| ||||||||||| ||||||| |||||
seq2  ACTCGCAAGGACCTGTTTCTGTTATTCTGTTCCTGCCGACAGCA-TTCTC  898

seq1  AGCTGTTTACATTTGATAGCTTGTTTTGCACCCGGATTTATTCCTG-CCA  949
      ||||||||||||||||||||||| ||||||||||||||||| | || |||
seq2  AGCTGTTTACATTTGATAGCTTG-TTTGCACCCGGATTTATCCTTGCCCA  947

seq1  ACAGCAGGTGAAAATTTGCTTTCA-GTGA--CTAC-TTCATTT-GTTC  992
      |||||| ||| ||||||||||||| ||||  |||| ||||||| ||||
seq2  ACAGCAAGTG-AAATTTGCTTTCATGTGACTCTACTTTCATTTAGTTC  994