BAC Information

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BAC

Clone NameB6Ng01-245J06
Chromosome6 (Build37)
Map Location 48,543,463 - 48,679,848
singlet/doubletdoublet
Overlap geneRepin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7
Upstream geneEzh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305
Downstream geneLOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245J06.bB6Ng01-245J06.g
ACCGA054425GA054426
length7141,102
definitionB6Ng01-245J06.b B6Ng01-245J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,543,463 - 48,544,175)(48,678,741 - 48,679,848)
sequence
gaattcacagttgcgggccattcattcttcatccagatgcgctctgttgc
cgtggtgctgtgttccagccctaagctagagcggactgggcaaagcccca
ggctcgacgccaggagaaccgttggtgccctgtctagttctctctggctc
tgagttttgaaaaagacagtaagggtggaccaaacacagtgaccacagcc
tggccacaaggtggcccaggggcgagcatccttttctgggcagagggtta
ggaaactgaagctcgggccggtggccaaaccggagctggtggctgccatg
gcgatggagccgggggccctccctggccttgtgccggagcggcagtgcag
cggggtgacctggcccgccccgcccccaggccgcggccgcctagccgaga
ctgaccctccgcagctcctgtagtcacgtggagctgggaacccagcgcgt
ggggggaggttggggacgggcctggcagttgtgaactcgaacctgccgct
gtcgccgctgcggggcggggaaccggccgcagaggccggcctggtgctct
atggatgggcgctgcgtccctggagggcacgcaggataggtatgggtcaa
gtaagggcgcaggggccaccgagggcgtgcgagggcagctccacctgtgg
ggcgcgtgacccgtgagtgtgtgcggctgtggggttcgcgcgcgcgcgcg
gaatatgaaatggg
gaattccagactcttaatagcagagtgagggttatgttcatgaggtttca
gatgtaaataaggactctactggggactagactagaggctgtctctgcta
caccttggtaaaaaatctgacgcattatgtccctgccttgagactttgtg
ggagatcagcttaaagctgatggaagttcatctgctggagaatgtttcat
gactacacagcatcccggctgtggcactggtactgttggctaccttcaac
tcaatttgctatgagaaccaagagcaaagaacacagcagacttttttttt
gaaaagttggttaagtcagcaaagaaacacacttaaagaaagtcctgtca
agagggcagagggaaaattactaaagagaccataaccatgaaaaataaac
caggtacttcacagcaggatagtaagagataagttgtttggaatgaaaga
gtctctgcaggcttcaacatgaaagtacaaacttgtttccaagacttctg
tttgggatactagtactctgctgtcgttgggaagaccttggctatatcct
tacttctgctaccttcgggtcttagacttactgagtttagcacctccaca
gaggaatttgcttcagaagttcatgtgctctgcaaaagaacaatgataga
gaaaacgtcagatataggcagattgctcagtgaagcagactgggcatcga
aagatccctctgcatataaggagacccatgtgccatgagacctttgcaca
ctataacaggaattctaaattctagctgatggcaacaaagggaagggaca
caagccttcattctttgttaaaacatattgggacttccccagtcatctgt
gttcctccatatgaattcccacatgtaagtcaacgtagctcattcagaca
cctctggtggcccagtgacacccgttttccatggggagcctgttacactg
ggccttcctgggaattttctcagacctgagcctgtcctcagtaccagaag
agtgcaatcacaatctgggacaggatgcagccgtgtcctgatgctgcctg
ccatatatgcttcttagcatggtgtaactagagctctgtgctagcttgta
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_48543463_48544175
seq2: B6Ng01-245J06.b_48_761

seq1  GAATTCACAGTTGCGGGCCATTCATTCTTCATCCAGATGCGCTCTGTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTTGCGGGCCATTCATTCTTCATCCAGATGCGCTCTGTTGC  50

seq1  CGTGGTGCTGTGTTCCAGCCCTAAGCTAGAGCGGACTGGGCAAAGCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTGCTGTGTTCCAGCCCTAAGCTAGAGCGGACTGGGCAAAGCCCCA  100

seq1  GGCTCGACGCCAGGAGAACCGTTGGTGCCCTGTCTAGTTCTCTCTGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGACGCCAGGAGAACCGTTGGTGCCCTGTCTAGTTCTCTCTGGCTC  150

seq1  TGAGTTTTGAAAAAGACAGTAAGGGTGGACCAAACACAGTGACCACAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTGAAAAAGACAGTAAGGGTGGACCAAACACAGTGACCACAGCC  200

seq1  TGGCCACAAGGTGGCCCAGGGGCGAGCATCCTTTTCTGGGCAGAGGGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACAAGGTGGCCCAGGGGCGAGCATCCTTTTCTGGGCAGAGGGTTA  250

seq1  GGAAACTGAAGCTCGGGCCGGTGGCCAAACCGGAGCTGGTGGCTGCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTGAAGCTCGGGCCGGTGGCCAAACCGGAGCTGGTGGCTGCCATG  300

seq1  GCGATGGAGCCGGGGGCCCTCCCTGGCCTTGTGCCGGAGCGGCAGTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGGAGCCGGGGGCCCTCCCTGGCCTTGTGCCGGAGCGGCAGTGCAG  350

seq1  CGGGGTGACCTGGCCCGCCCCGCCCCCAGGCCGCGGCCGCCTAGCCGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTGACCTGGCCCGCCCCGCCCCCAGGCCGCGGCCGCCTAGCCGAGA  400

seq1  CTGACCCTCCGCAGCTCCTGTAGTCACGTGGAGCTGGGAACCCAGCGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCTCCGCAGCTCCTGTAGTCACGTGGAGCTGGGAACCCAGCGCGT  450

seq1  GGGGGGAGGTTGGGGACGGGCCTGGCAGTTGTGAACTCGAACCTGCCGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAGGTTGGGGACGGGCCTGGCAGTTGTGAACTCGAACCTGCCGCT  500

seq1  GTCGCCGCTGCGGGGCGGGGAACCGGCCGCAGAGGCCGGCCTGGTGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCGCTGCGGGGCGGGGAACCGGCCGCAGAGGCCGGCCTGGTGCTCT  550

seq1  ATGGATGGGCGCTGCGTCCCTGGAGGGCACGCGGGAGAGGTATGGGTCGA  600
      |||||||||||||||||||||||||||||||| ||| ||||||||||| |
seq2  ATGGATGGGCGCTGCGTCCCTGGAGGGCACGCAGGATAGGTATGGGTCAA  600

seq1  GTAAGGGCGCAGGGGCCACCGAGGGCGTGCGAGGGCAGCTCCACCTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGCGCAGGGGCCACCGAGGGCGTGCGAGGGCAGCTCCACCTGTGG  650

seq1  GGCGCGTGA-CCGTGAGTGTGTGCGGCTGTGGGGTTCGCGCGCGCGCGCG  699
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCGTGACCCGTGAGTGTGTGCGGCTGTGGGGTTCGCGCGCGCGCGCG  700

seq1  GAATATGAAAGGGG  713
      |||||||||| |||
seq2  GAATATGAAATGGG  714

seq1: chr6_48678741_48679848
seq2: B6Ng01-245J06.g_65_1166 (reverse)

seq1  TTAACAAGCTAGGCACAGAGGCTCTAG-TACACCATGCCTAAG-AGCATA  48
      || |||||||| ||||||| ||||||| ||||||||| ||||| ||||| 
seq2  TTTACAAGCTA-GCACAGA-GCTCTAGTTACACCATG-CTAAGAAGCAT-  46

seq1  ATAT-GCAGGCAGCATCAGGACCACGGCTGCATCCCTGGTCCCCGGTTGT  97
      |||| |||||||||||||||| |||||||||||||   ||||| | ||| 
seq2  ATATGGCAGGCAGCATCAGGA-CACGGCTGCATCC--TGTCCCAGATTG-  92

seq1  TGATTGCACTCTTCTGGGTACTGAGGACAGGCTCAGGTCTGAGAAAATTC  147
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGATTGCACTCTTCT-GGTACTGAGGACAGGCTCAGGTCTGAGAAAATTC  141

seq1  CCAGGAAGG-CCAGTGGTAACAGGCTCCCCATGGAAAACGGGTGTCACTG  196
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGGCCCAGT-GTAACAGGCTCCCCATGGAAAACGGGTGTCACTG  190

seq1  GGCCACCAGAGGTGTCTGAATGAGCTACGTTGACTTACATGTGGGAATTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCAGAGGTGTCTGAATGAGCTACGTTGACTTACATGTGGGAATTC  240

seq1  ATATGGAGGAACACAGATGACTGGGGAAGTCCCAATATGTTTTAACAAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGGAACACAGATGACTGGGGAAGTCCCAATATGTTTTAACAAAG  290

seq1  AATGAAGGCTTGTGTCCCTTCCCTTTGTTGCCATCAGCTAGAATTTAGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGCTTGTGTCCCTTCCCTTTGTTGCCATCAGCTAGAATTTAGAA  340

seq1  TTCCTGTTATAGTGTGCAAAGGTCTCATGGCACATGGGTCTCCTTATATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTATAGTGTGCAAAGGTCTCATGGCACATGGGTCTCCTTATATG  390

seq1  CAGAGGGATCTTTCGATGCCCAGTCTGCTTCACTGAGCAATCTGCCTATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGATCTTTCGATGCCCAGTCTGCTTCACTGAGCAATCTGCCTATA  440

seq1  TCTGACGTTTTCTCTATCATTGTTCTTTTGCAGAGCACATGAACTTCTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACGTTTTCTCTATCATTGTTCTTTTGCAGAGCACATGAACTTCTGA  490

seq1  AGCAAATTCCTCTGTGGAGGTGCTAAACTCAGTAAGTCTAAGACCCGAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTCCTCTGTGGAGGTGCTAAACTCAGTAAGTCTAAGACCCGAAG  540

seq1  GTAGCAGAAGTAAGGATATAGCCAAGGTCTTCCCAACGACAGCAGAGTAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGAAGTAAGGATATAGCCAAGGTCTTCCCAACGACAGCAGAGTAC  590

seq1  TAGTATCCCAAACAGAAGTCTTGGAAACAAGTTTGTACTTTCATGTTGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCCCAAACAGAAGTCTTGGAAACAAGTTTGTACTTTCATGTTGAA  640

seq1  GCCTGCAGAGACTCTTTCATTCCAAACAACTTATCTCTTACTATCCTGCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAGAGACTCTTTCATTCCAAACAACTTATCTCTTACTATCCTGCT  690

seq1  GTGAAGTACCTGGTTTATTTTTCATGGTTATGGTCTCTTTAGTAATTTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTACCTGGTTTATTTTTCATGGTTATGGTCTCTTTAGTAATTTTC  740

seq1  CCTCTGCCCTCTTGACAGGACTTTCTTTAAGTGTGTTTCTTTGCTGACTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCCTCTTGACAGGACTTTCTTTAAGTGTGTTTCTTTGCTGACTT  790

seq1  AACCAACTTTTCAAAAAAAAAGTCTGCTGTGTTCTTTGCTCTTGGTTCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACTTTTCAAAAAAAAAGTCTGCTGTGTTCTTTGCTCTTGGTTCTC  840

seq1  ATAGCAAATTGAGTTGAAGGTAGCCAACAGTACCAGTGCCACAGCCGGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAATTGAGTTGAAGGTAGCCAACAGTACCAGTGCCACAGCCGGGA  890

seq1  TGCTGTGTAGTCATGAAACATTCTCCAGCAGATGAACTTCCATCAGCTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTAGTCATGAAACATTCTCCAGCAGATGAACTTCCATCAGCTTT  940

seq1  AAGCTGATCTCCCACAAAGTCTCAAGGCAGGGACATAATGCGTCAGATTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGATCTCCCACAAAGTCTCAAGGCAGGGACATAATGCGTCAGATTT  990

seq1  TTTACCAAGGTGTAGCAGAGACAGCCTCTAGTCTAGTCCCCAGTAGAGTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAAGGTGTAGCAGAGACAGCCTCTAGTCTAGTCCCCAGTAGAGTC  1040

seq1  CTTATTTACATCTGAAACCTCATGAACATAACCCTCACTCTGCTATTAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTACATCTGAAACCTCATGAACATAACCCTCACTCTGCTATTAAG  1090

seq1  AGTCTGGAATTC  1108
      ||||||||||||
seq2  AGTCTGGAATTC  1102