BAC Information

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BAC

Clone NameB6Ng01-245J13
Chromosome6 (Build37)
Map Location 58,902,290 - 58,903,134
singlet/doubletsinglet
Overlap geneD430015B01Rik
Upstream geneV1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5
Downstream geneTigd2, Gprin3, EG634166, EG627108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245J13.bB6Ng01-245J13.g
ACCGA054439GA054440
length1,169843
definitionB6Ng01-245J13.b B6Ng01-245J13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcttagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
gggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcacagggctccc
aatggaggagctagaagaaagtaccaggagctaaagggatctgcaaccct
ataggtggaacaacattatgaactaaccagtacccctggagctcttgact
ctagctgcatatgtatcaaaagattggcctagtcggccatcactggaaaa
gagaaggtccaattgggaacacgcgacttgttgtgtccgggttacacgac
cccaaggtcaagggggaag
gaattcaattcccagtaaccacatggtggctcacaaccatctgtaaaggg
atctcttctggtgtgactggagacagcaatagtgtactcatataaataaa
ataagtaattcttaaaaagaagggaaggaagaaagggagggagggaggga
aggaaggaaagaagaaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagagaaggaagaacgaaag
agaaggaagaacgaaagagaaggaagaacgaaagagaagagaggtaaaga
gaggggagatcttgtatagagttcataaaattttcataaaagtaaggagg
cctcctgcccaagttagtccccataagctgtagctgactgtacgcttcca
ctggcatattataaattacatattatataagcttgaatgatggaccataa
aacagtcactctgtgcttcagaacatagccaacattgtaaaaaatttcta
gtggtgtgtagaacccacatgatgaagtacaaaatgtagctatgccttct
tataaaactagtaagcacctgaggtagttttgtatttaacaagcacatgt
ttgggggtgtcttgggacagctttagggaaactcgtagtaaggcaggatt
ctttctgctctcttctttgaggaacttaaccatccttgctgcctattact
attcattgtctcctattcatatagttgacagaaaaaaaaatgtcacatca
agagcaattactgcaaggcagatataaggaagcatgaaatttagattcat
tgacttttattatagccccccaaatacagggctgttcactgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_58902290_58903134
seq2: B6Ng01-245J13.g_69_911 (reverse)

seq1  CACAGTGGAACAGCCCTGTATTT-GGGGGCT-TTATAAAAGTCAATGAAT  48
      |||||| |||||||||||||||| ||||||| | ||||||||||||||||
seq2  CACAGT-GAACAGCCCTGTATTTGGGGGGCTATAATAAAAGTCAATGAAT  49

seq1  CTAAATTTCATGCTTCCTTATATCTGCC-TGCAGTAATTGCTCTTGATGT  97
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTAAATTTCATGCTTCCTTATATCTGCCTTGCAGTAATTGCTCTTGATGT  99

seq1  GACATTTTTTTTTCTTGTCAACTATATGAATAGGAGACAATGAATAGTAA  147
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GACATTTTTTTTTC-TGTCAACTATATGAATAGGAGACAATGAATAGTAA  148

seq1  TAGGCAGCAAGGATGGTTAAGTTCCTCAAAGAAGAGAGCAGAAAGAATCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGCAAGGATGGTTAAGTTCCTCAAAGAAGAGAGCAGAAAGAATCC  198

seq1  TGCCTTACTACGAGTTTCCCTAAAGCTGTCCCAAGACACCCCC-AACATG  246
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCCTTACTACGAGTTTCCCTAAAGCTGTCCCAAGACACCCCCAAACATG  248

seq1  TGCTTGTTAAATACAAAACTACCTCAGGTGCTTACTAGTTTTATAAGAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTAAATACAAAACTACCTCAGGTGCTTACTAGTTTTATAAGAAG  298

seq1  GCATAGCTACATTTTGTACTTCATCATGTGGGTTCTACACACCACTAGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCTACATTTTGTACTTCATCATGTGGGTTCTACACACCACTAGAA  348

seq1  ATTTTTTACAATGTTGGCTATGTTCTGAAGCACAGAGTGACTGTTTTATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTACAATGTTGGCTATGTTCTGAAGCACAGAGTGACTGTTTTATG  398

seq1  GTCCATCATTCAAGCTTATATAATATGTAATTTATAATATGCCAGTGGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCATTCAAGCTTATATAATATGTAATTTATAATATGCCAGTGGAA  448

seq1  GCGTACAGTCAGCTACAGCTTATGGGGACTAACTTGGGCAGGAGGCCTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTACAGTCAGCTACAGCTTATGGGGACTAACTTGGGCAGGAGGCCTCC  498

seq1  TTACTTTTATGAAAATTTTATGAACTCTATACAAGATCTCCCCTCTCTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTATGAAAATTTTATGAACTCTATACAAGATCTCCCCTCTCTTT  548

seq1  ACCTCTCTTCTCTTTCGTTCTTCCTTCTCTTTCGTTCTTCCTTCTCTTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCTTCTCTTTCGTTCTTCCTTCTCTTTCGTTCTTCCTTCTCTTTC  598

seq1  GTTCTTCCTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  646
      |||||||||||    |||||||||||||||||||||||||||||||||||
seq2  GTTCTTCCTTC----TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  644

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTTCTTTCCTTCCTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTTCTTTCCTTCCTT  694

seq1  CCCTCCCTCCCTCCCTTTCTTCCTTCCCTTCTTTTTAAGAATTACTTATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTCCCTCCCTTTCTTCCTTCCCTTCTTTTTAAGAATTACTTATT  744

seq1  TTATTTATATGAGTACACTATTGCTGTCTCCAGTCACACCAGAAGAGATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATATGAGTACACTATTGCTGTCTCCAGTCACACCAGAAGAGATC  794

seq1  CCTTTACAGATGGTTGTGAGCCACCATGTGGTTACTGGGAATTGAATTC  845
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACAGATGGTTGTGAGCCACCATGTGGTTACTGGGAATTGAATTC  843