BAC Information

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BAC

Clone NameB6Ng01-245L16
Chromosome6 (Build37)14 (Build37)
Map Location 17,911,127 - 17,911,16850,680,626 - 50,681,294
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTes, EG232599, Cav2, Cav1, Met, Capza2, St7
Downstream geneWnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245L16.bB6Ng01-245L16.g
ACCGA054540GA054541
length6421,163
definitionB6Ng01-245L16.b B6Ng01-245L16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,911,127 - 17,911,168)(50,680,626 - 50,681,294)
sequence
gaattcatttctttaaagttttctggtttgttgcaatctaaaatatcaaa
gtatgtccttatgattctctgaatttcctcagtgtatattttaatatctt
cattttaatttctaactatattaatttggatcttcttcctatatctttta
gttaatttgcccaaagctttgtagctgctttatccatgatagccagaaat
tggaaacagccacggtgtccatcaactgatgaatgaatacaaatgttaca
tttaatctgtgagatgttattcaatctgttaagaaaaatactttgagttt
tgtagataaatggatggagataaaagagacaacccaggacaaaaagacaa
agtatatttgtcagagttctctagagtaacacttctgggagttacatgga
tcgaatatagaaccattagtaagcaaagcacttgtcttctcttttttccg
taaactaaccatagaacacaccacatgaaagtgtaggtgtaagcttggca
gcagatggcaatgtaatgggaatagaaattgtaggcatttgggccacttc
gtagtgcaatttacttgtgctttcaggacctgttctgccctgatctaatt
tgtatatgtatatgtgtatgtgtatgtgtatgtgtatgtgta
gaattccacttaggaggtattcaatgattaagtaaataggataacccagt
ctatgaacagtcagcctcattttctgtctattcctgttacttcttaatgg
gctcatgaaagaagttccatgttagcagagatggaggttattcatgggct
agatttccactcatcaaaactgtcatagttacaactgtttctgagtgcca
gctctatcaacaacagagacaactactatgactcaaaatatgacatcatt
tcccatggtgagcagttaataaccttgattcaagttgacaatattgagtg
tcttagtcagggtttctattcctggacaagacatcacgaataagaagcaa
gtcggggagaaaagggtttatttggcttacatttccacattgctgttcat
cactgaaggaagttaggactggaactcaagcaggtcagttagcagaagct
gatgcagaggtcatggagggatgtcctttactggcttgcttcctctggct
tacttaacctgttctcttatagaaccaagactaccagcccagagatggca
ccacccacaagtggacctcctaccttgatcactaattgagaaaatgtctt
acagatggatctcatggaggcatttccccaactgaagatcctgtctctgt
gaaaactccatcctgtgtcaagttgacacaaaactgtggagagcagcaat
aacatttaccatcataagatggtgctggctccgcagtgccttatgccacc
taaacaaagaactagctatatgtgcatgtgctaggagcaaaagcccgcca
aaagtcactagcccaccccggggcttgggagattgtgggtggagctacca
gtcatagttaggcacatcacaccagagggtatttaagcaacacgtttctg
agccttttcgcctttctcatcaagatgtaataaagggtagccatggaaag
gatcttgtgtcctgtgtgcattcctgcgggcaggacaaagctcaggacat
ttggcgcagaaaccgggaccacctcaccatcgctagcgcaaagaagagtc
ctctgctccagaggagaagaatcagaccatggcggaggtaaactctgaga
gacatgttacaaacaaatgccagaaacgattgtgtagagctcaaaaaagg
gagagcacttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_17911127_17911168
seq2: B6Ng01-245L16.b_647_688 (reverse)

seq1  TACACATACACATACACATACACATACACATATACATATACA  42
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATACACATACACATACACATACACATATACATATACA  42

seq1: chr14_50680626_50681294
seq2: B6Ng01-245L16.g_567_1229

seq1  TACTTAACCTGTTCTCTTATAGAACCAAGACTACCAGCCCAGAGATGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAACCTGTTCTCTTATAGAACCAAGACTACCAGCCCAGAGATGGCA  50

seq1  CCACCCACAAGTGGACCTCCTACCTTGATCACTAATTGAGAAAATGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACAAGTGGACCTCCTACCTTGATCACTAATTGAGAAAATGTCTT  100

seq1  ACAGATGGATCTCATGGAGGCATTTCCCCAACTGAAGATCCTGTCTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGATCTCATGGAGGCATTTCCCCAACTGAAGATCCTGTCTCTGT  150

seq1  GAAAACTCCATCCTGTGTCAAGTTGACACAAAACTGTGGAGAGCAGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCCATCCTGTGTCAAGTTGACACAAAACTGTGGAGAGCAGCAAT  200

seq1  AACATTTACCATCATAAGATGGTGCTGGCTCCGCAGTGCCTTATGCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTACCATCATAAGATGGTGCTGGCTCCGCAGTGCCTTATGCCACC  250

seq1  TAAACAAAGAACTAGCTATATGTGCATGTGCTAGGAGCAAAAGCCCGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAGAACTAGCTATATGTGCATGTGCTAGGAGCAAAAGCCCGCCA  300

seq1  AAAGTCACTAGCCCACCCCGGGGCTTGGGAGATTGTGGGTGGAGCTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACTAGCCCACCCCGGGGCTTGGGAGATTGTGGGTGGAGCTACCA  350

seq1  GTCATAGTTAGGCACATCACACCAGAGGGTATTTAAGCAACACGTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGTTAGGCACATCACACCAGAGGGTATTTAAGCAACACGTTTCTG  400

seq1  AGCCTTTTCGCCTTTCTCATCAAGATGTAATAAAGGGTAGCCATGG-AAG  449
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCCTTTTCGCCTTTCTCATCAAGATGTAATAAAGGGTAGCCATGGAAAG  450

seq1  GATCTTGTGTCCTGTGTGCATTCCTGCGGGCAGGGACAAAGCTCAGGACA  499
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GATCTTGTGTCCTGTGTGCATTCCTGCGGGCA-GGACAAAGCTCAGGACA  499

seq1  TTTGGCGCAGAAAACCCGGGACCACCTCACCATCGGCTAGCGCCAAAGAG  549
      |||||||||||||  ||||||||||||||||||| |||||||| ||  ||
seq2  TTTGGCGCAGAAA--CCGGGACCACCTCACCATC-GCTAGCGCAAAGAAG  546

seq1  AAGGCCCTCTGCTCCAGAGGAGAAGATACAGAACCATGGCGGAGGTAAAC  599
      |  | |||||||||||||||||||||  ||| ||||||||||||||||||
seq2  A--GTCCTCTGCTCCAGAGGAGAAGAATCAG-ACCATGGCGGAGGTAAAC  593

seq1  TCTGAGAGACATG-TAC-AACAGATGCCAGAAACAGAGTGGTGTAAAGAG  647
      ||||||||||||| ||| |||| ||||||||||| || | ||||  ||||
seq2  TCTGAGAGACATGTTACAAACAAATGCCAGAAAC-GA-TTGTGT--AGAG  639

seq1  CTCAAAAAAGG--GAGCACTTAGA  669
      |||||||||||  |||||||||||
seq2  CTCAAAAAAGGGAGAGCACTTAGA  663