BAC Information

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BAC

Clone NameB6Ng01-245M23
Chromosome6 (Build37)
Map Location 142,452,697 - 142,595,647
singlet/doubletdoublet
Overlap geneLdhb, Kcnj8, Abcc9, 5330439B14Rik
Upstream geneSlco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2
Downstream geneCmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245M23.bB6Ng01-245M23.g
ACCGA054598GA054599
length507990
definitionB6Ng01-245M23.b B6Ng01-245M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,452,697 - 142,453,208)(142,594,654 - 142,595,647)
sequence
aagcagctaccacacaaaagggtcagtgtgctctacccagggcgggcagg
gggtggggggaggggctgccaccttgcttctctctctcttcctacattta
aggaagctctcagaacaggcaaggcctcaagccactaaaactaagaggaa
cataaagaagccatggtgtgaacggcaaagggtgtgtgtaagggcagcca
ggagtctagacagttagacagcagaaggaaggtcaagtctggagacacca
aagcagcttacaactgatgtcgagagcttcgggccacaatgactgtggaa
acaagctggagaactcagaaactttgatcttgccaagatatgctcagctg
gttaaaggaatgcatatatacatatgtgtgtatatacatatgcatgtaca
ttatatagagagagggagcaagagataagaggaaggaagttagagagagt
acgagacaagcaaaatgcagcaggttgataaatctgaaagatgcatatgt
ggaagtg
gaattctgaaatgactgccagttaaagtctaagtacaagcgtctgataac
atccataagctcgagaaatagaaaagagtcaaggaatttatcacctttta
ttttgtgtctttctcttaaagacatttcttagttatttgagaattttata
caacctattgtgattgtggtcacccgtcccccaactcctctccttaaaaa
tattttgtatgtttgaaatatggaacttaaatgttgttttaacattgacg
cagactcctctagatatcattctttattttgaaatatttatacgttatct
atgacttgaaaatatatctatgtgactaagccacaaacggatgctctaat
tctagtttcaattcatgtttcttgaaggtcaccataaaaaaatccactat
tatataaagtgaatttaatacaaaccaaaacatctgtggctactaaagag
agtgaattattaataaccctttaatcttaaattagaaaagaaattttcgt
ttagcagtttatagcattgaacacttcagcgcagaagaatcaaattttac
ttatcacatgacattttaattagatccagatccccataattgaagtggct
tatttagtaatcgtgttctaaggatggtggcctctgccttcttctctagt
tgtctactctgtgtctcccctctcagtctcattccccttagttatacaga
aatactcagcacagccctttgtgtaatctgggttgtgtgtgtcctcttta
cagcagaagcaggtattctgtggcttacgctgcccagaagccttggctcc
taaatgctacagttgaggaaatatcacttttggaagtcctttcacagaca
gaggtaactttgcatgtattagattttacaccgaaacaacacatgtgagc
catgatttggagtcaattcacttattggagatgtggatgctcctaaacta
atggggaagatgagggtcagaatggtgtggggaaggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_142452697_142453208
seq2: B6Ng01-245M23.b_45_557

seq1  GAATTCAAGCAGCTACCACACAAAAGGGTCAGTGTGCTCTACCCAGGGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCAGCTACCACACAAAAGGGTCAGTGTGCTCTACCCAGGGCG  50

seq1  GGCAGGGGGTGGGGGGAGGGGCTGCCAGCTTGCTTCTCTCTCTCTTCCTA  100
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGCAGGGGGTGGGGGGAGGGGCTGCCACCTTGCTTCTCTCTCTCTTCCTA  100

seq1  CATTTAAGGAAGCTCTCAGAACAGGCAAGGCCTCAAGCCACTAAAACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAGGAAGCTCTCAGAACAGGCAAGGCCTCAAGCCACTAAAACTAA  150

seq1  GAGGAACATAAAGAAGCCATGGTGTGAACGGCAAAGGGTGTGTGTAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACATAAAGAAGCCATGGTGTGAACGGCAAAGGGTGTGTGTAAGGG  200

seq1  CAGCCAGGAGTCTAGACAGTTAGACAGCAGAAGGAAGGTCAAGTCTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGAGTCTAGACAGTTAGACAGCAGAAGGAAGGTCAAGTCTGGAG  250

seq1  ACACCAAAGCAGCTTACAACTGATGTCGAGAGCTTCGGGCCACAATGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAAGCAGCTTACAACTGATGTCGAGAGCTTCGGGCCACAATGACT  300

seq1  GTGGAAACAAGCTGGAGAACTCAGAAACTTTGATCTTGCCAAGATATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAACAAGCTGGAGAACTCAGAAACTTTGATCTTGCCAAGATATGCT  350

seq1  CAGCTGGTTAAAGGAATGCATATATACATATGTGTGTATATACATATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGTTAAAGGAATGCATATATACATATGTGTGTATATACATATGCA  400

seq1  TGTACA-TATATAGAGAGAGGGAGCAAGAGAGAAGAGGAAGGAAG-TAGA  448
      |||||| |||||||||||||||||||||||| ||||||||||||| ||||
seq2  TGTACATTATATAGAGAGAGGGAGCAAGAGATAAGAGGAAGGAAGTTAGA  450

seq1  GAGAGTACGAGACAAAGCAAAATGCAGCAGGTTGATAAATCTGAAAGATG  498
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGAGTACGAGAC-AAGCAAAATGCAGCAGGTTGATAAATCTGAAAGATG  499

seq1  CATATGTGGAAGTG  512
      ||||||||||||||
seq2  CATATGTGGAAGTG  513

seq1: chr6_142594654_142595647
seq2: B6Ng01-245M23.g_72_1061 (reverse)

seq1  CTTTCCTTCCCCAC-CCCTTCTGACCCTCTTCTTCCCCCATTTAGTTTTG  49
      | |||||||||||| || ||||||||||| ||||||||   ||||||| |
seq2  CCTTCCTTCCCCACACCATTCTGACCCTCATCTTCCCC--ATTAGTTTAG  48

seq1  GGGCAT-CACTTCT-CAATAAGTGAATTGGCTCCAAATTCATGGCTCACA  97
      | |||| ||| ||| |||||||||||||| ||||||| ||||||||||||
seq2  GAGCATCCACATCTCCAATAAGTGAATTGACTCCAAA-TCATGGCTCACA  97

seq1  TGTGGTTGTTTCGGTTGTAAAATCT-ATACATGCAAAGTTACCTCTGTCT  146
      ||| |||||||||| |||||||||| ||||||||||||||||||||||||
seq2  TGT-GTTGTTTCGG-TGTAAAATCTAATACATGCAAAGTTACCTCTGTCT  145

seq1  GTTGAAAGGACTTCCAAAAGTGATATTTTCCTCAACTGTAGCATTTAGGA  196
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  G-TGAAAGGACTTCCAAAAGTGATA-TTTCCTCAACTGTAGCATTTAGGA  193

seq1  GCCAAGGCTTCTGGGCAGCGTAAGCCACAGAATACCTGCTTCTGCTGTAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGCTTCTGGGCAGCGTAAGCCACAGAATACCTGCTTCTGCTGTAA  243

seq1  AGAGGACACACACAACCCAGATTACACAAAGGGCTGTGCTGAGTATTTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACACACACAACCCAGATTACACAAAGGGCTGTGCTGAGTATTTCT  293

seq1  GTATAACTAAGGGGAATGAGACCTGAGAGGGGAGACACAGAGTAGACAAC  346
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTATAACTAAGGGGAATGAGA-CTGAGAGGGGAGACACAGAGTAGACAAC  342

seq1  TAGAGAAGAAGGCAGAGGCCACCATCCTTAGAACACGATTACTAAATAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGAAGGCAGAGGCCACCATCCTTAGAACACGATTACTAAATAAG  392

seq1  CCACTTCAATTATGGGGATCTGGATCTAATTAAAATGTCATGTGATAAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCAATTATGGGGATCTGGATCTAATTAAAATGTCATGTGATAAGT  442

seq1  AAAATTTGATTCTTCTGCGCTGAAGTGTTCAATGCTATAAACTGCTAAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGATTCTTCTGCGCTGAAGTGTTCAATGCTATAAACTGCTAAAC  492

seq1  GAAAATTTCTTTTCTAATTTAAGATTAAAGGGTTATTAATAATTCACTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTCTTTTCTAATTTAAGATTAAAGGGTTATTAATAATTCACTCT  542

seq1  CTTTAGTAGCCACAGATGTTTTGGTTTGTATTAAATTCACTTTATATAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTAGCCACAGATGTTTTGGTTTGTATTAAATTCACTTTATATAAT  592

seq1  AGTGGATTTTTTTATGGTGACCTTCAAGAAACATGAATTGAAACTAGAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATTTTTTTATGGTGACCTTCAAGAAACATGAATTGAAACTAGAAT  642

seq1  TAGAGCATCCGTTTGTGGCTTAGTCACATAGATATATTTTCAAGTCATAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCATCCGTTTGTGGCTTAGTCACATAGATATATTTTCAAGTCATAG  692

seq1  ATAACGTATAAATATTTCAAAATAAAGAATGATATCTAGAGGAGTCTGCG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACGTATAAATATTTCAAAATAAAGAATGATATCTAGAGGAGTCTGCG  742

seq1  TCAATGTTAAAACAACATTTAAGTTCCATATTTCAAACATACAAAATATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTAAAACAACATTTAAGTTCCATATTTCAAACATACAAAATATT  792

seq1  TTTAAGGAGAGGAGTTGGGGGACGGGTGACCACAATCACAATAGGTTGTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGAGAGGAGTTGGGGGACGGGTGACCACAATCACAATAGGTTGTA  842

seq1  TAAAATTCTCAAATAACTAAGAAATGTCTTTAAGAGAAAGACACAAAATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCTCAAATAACTAAGAAATGTCTTTAAGAGAAAGACACAAAATA  892

seq1  AAAGGTGATAAATTCCTTGACTCTTTTCTATTTCTCGAGCTTATGGATGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGATAAATTCCTTGACTCTTTTCTATTTCTCGAGCTTATGGATGT  942

seq1  TATCAGACGCTTGTACTTAGACTTTAACTGGCAGTCATTTCAGAATTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGACGCTTGTACTTAGACTTTAACTGGCAGTCATTTCAGAATTC  990