BAC Information

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BAC

Clone NameB6Ng01-246A06
Chromosome6 (Build37)
Map Location 4,281,761 - 4,385,785
singlet/doubletdoublet
Overlap geneLOC667381, LOC100039965
Upstream geneSamd9l, AI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1
Downstream geneCol1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246A06.bB6Ng01-246A06.g
ACCGA054750GA054751
length1,1891,147
definitionB6Ng01-246A06.b B6Ng01-246A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,281,761 - 4,282,471)(4,384,638 - 4,385,785)
sequence
gaattcagggcccatacctaaacatgataaaagcaatctacagtaaacca
gtagccaacatcatactaaatgcagagaagctggaagcaatcccactaaa
atcagggattagacaaggctgcctttctccctacctactcaccatagtac
ttgaagttctagccagagcagtttgacaacaaaaggaggtcaaggggata
caatttggaaaggaagaagtcaaaatatcactatttgcagatgatatgat
agcatatataagtcaccctaaaaatcccaaccgaggactcctaaacctga
taagcagcagtagctggatataaaattaactcacacaagtcaatgtcctt
tctctccacaaaggattaaagaggctgagaaagaaattagggaaacaaca
cccttcacaatagtcacaaataatataaaataccttggtgtgactctaac
taagtaaagatcggtatgataagaacttcaagtctctgaagaaagaaatt
aaagaagatctcagaagatggaaagatctctcatactcatggattggcag
gatcaatatagtaaaaatggctatcttgccaaaagcaatctacagattca
atgcaatccccatcaaaattccaactcaattcttcaacgaattagaaagg
gcaatttgcaaattcatctggattctaaaaaacctaggatagcaaaaact
cttctcaatggtaaaagaatctctggtggaatcaccatgcctgacctaaa
gctgtacttcagagcaattgtgattaaaaactgcatggtactggtatagc
gacagacgggtagaccaatggagtagaattgaagacccagaaatgaaccc
acacacctgtggccacttgatctttgacaagggagctaaaaccatccagt
ggaaaatagacagcatttcaacaaatggtgctggcacaactggcatttat
catgtagaagaatgcaaattgatcaattttcttaattcacaaaacaaatt
attttctgaagaaatttattccaacatttctcaataagtacatctgtcct
gctgagtcaatttagtatctgatgataaaactgtaatctgggaggccaag
aaaaagaactgagacatgatctatagcatcgctaaaaatagttccagtag
taggtccagaatctgaaattccttaaaaatatccatatg
gaattcaggccctcaggcttcatggtaggcatctctacctggtgagccat
ctcagtaccccagcagtttttgctggtgggaaaatagagtgttgactttt
ggaggtgaagacccatgatttgtgtatgaaaagcagcgtttattcttgtt
ctcatacatatgaacctccagtgtgtgtttaatggatgggtgccaaagag
catggtagaagacagagaatcaaaggcatgtgtgtgacaccatttgccaa
gtagttcccaggtgtccatcttgataaacaagaagaaaaaggatgctgtc
tatgccttctcttggattcaaattctcacatgactgaagtgaccattatt
ttgactcctggaggatcagcagtctcttactctcttagtagctgctttct
acttacttattcatttgttttcacgcagcagtggacagagggcataaatg
agaaataaagaatctcatcaacaatcagattttgaaaccgttttcttttt
tttttcttctcttgttttgttttgcaagaagctacaactaggaatggttc
acaagacacttcaacgtatcttgatataaccatactctggatacattaag
cttttagcataattaggtctacaattaaaaactagtaatagttttagggt
actaagaaaatggatgtctgatgaaccatcatgttttgtttgcacaatat
cacatccttctctttcctgctctttctagacaaggtctcattatgttgct
caggttggccttgaaccttgtgccaaacctactgagggcagaaataacag
gagtacctcgctccctctgtcttcacagcatcccctttcatcttaagaaa
tcatcattgtgccaattctgtaaaggatacctatatacggttctcctgac
agtatcatcatgtttatgactgattaatcacagtgggttctttttttttt
tcttggcataaggattggtttcaaccccttgagtatggttgaataggcag
tgttccgtcaggtttttacacacggaatcccagagagagcactttttcct
tgcgacattaatgagaatgaagtcattgtagcctgtttatagttctaacc
ttagtttagctcctttgtcattacttatccgaaaatacattggggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_4281761_4282471
seq2: B6Ng01-246A06.b_537_1232

seq1  AGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCTCATACTCATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCTCATACTCATGGA  50

seq1  TTGGCAGGATCAATATAGTAAAAATGGCTATCTTGCCAAAAGCAATCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGGATCAATATAGTAAAAATGGCTATCTTGCCAAAAGCAATCTAC  100

seq1  AGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATT  150

seq1  AGAAAGGGCAATTTGCAAATTCATCTGGATTCTAAAAAACCTAGGATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGCAATTTGCAAATTCATCTGGATTCTAAAAAACCTAGGATAGC  200

seq1  AAAAACTCTTCTCAATGGTAAAAGAATCTCTGGTGGAATCACCATGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCTTCTCAATGGTAAAAGAATCTCTGGTGGAATCACCATGCCTG  250

seq1  ACCTAAAGCTGTACTTCAGAGCAATTGTGATTAAAAACTGCATGGTACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAGCTGTACTTCAGAGCAATTGTGATTAAAAACTGCATGGTACTG  300

seq1  GTATAGCGACAGACGGGTAGACCAATGGAGTAGAATTGAAGACCCAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCGACAGACGGGTAGACCAATGGAGTAGAATTGAAGACCCAGAAA  350

seq1  TGAACCCACACACCTGTGGCCACTTGATCTTTGACAAGGGAGCTAAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCACACACCTGTGGCCACTTGATCTTTGACAAGGGAGCTAAAACC  400

seq1  ATCCAGTGGAAAATAGACAGCATTTCAACAAATGGTGCTGGCACAACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTGGAAAATAGACAGCATTTCAACAAATGGTGCTGGCACAACTGG  450

seq1  CATTTATCATGTAGAAGAATGCAAATTGATCAATTTTCTTAATTCAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CATTTATCATGTAGAAGAATGCAAATTGATCAATTTTCTTAATTC-ACAA  499

seq1  AACAAATTA-TTTCTG-AGAAATTTATTCCAACATTTCTCAATAAGTACA  548
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  AACAAATTATTTTCTGAAGAAATTTATTCCAACATTTCTCAATAAGTACA  549

seq1  TCTGTCCTGCTGAGTCAAATTTTAGTATCTGATTGAT-ATACTGTAAATC  597
      ||||||||||||||||||  |||||||||||| |||| | ||||| ||||
seq2  TCTGTCCTGCTGAGTCAA--TTTAGTATCTGA-TGATAAAACTGT-AATC  595

seq1  TGGGAGG-CAAG-AAAAGAACTGAGACATTGATTCTAATAGCTTCCGCTA  645
      ||||||| |||| ||||||||||||||| ||| ||| ||||| | |||| 
seq2  TGGGAGGCCAAGAAAAAGAACTGAGACA-TGA-TCT-ATAGCAT-CGCT-  640

seq1  AAAAATAGTTCCAGTAGTA-GTCCAGAATCTGAAATTCCCTAAAATAACC  694
      ||||||||||||||||||| ||||||||||||||||||| ||||      
seq2  AAAAATAGTTCCAGTAGTAGGTCCAGAATCTGAAATTCCTTAAA------  684

seq1  ATTGGAAGCTCCATATG  711
           ||  ||||||||
seq2  -----AATATCCATATG  696

seq1: chr6_4384638_4385785
seq2: B6Ng01-246A06.g_67_1213 (reverse)

seq1  GGCCCCAATGTA--TTCTGATAATGTAATGTGACAAAAGAAGCTAAACTT  48
      ||||||||||||  ||| ||||| ||||  |||| |||| |||||||| |
seq2  GGCCCCAATGTATTTTCGGATAA-GTAA--TGAC-AAAGGAGCTAAAC-T  45

seq1  AGGGTTAG-ACTATAAACA-GCTACAATTGACTTCA-TCTCAATTTAATG  95
      | |||||| |||||||||| ||||||| |||||||| |||||  ||||| 
seq2  AAGGTTAGAACTATAAACAGGCTACAA-TGACTTCATTCTCA--TTAAT-  91

seq1  GTCGCAAGGAAAAAGTGCCTCTCTCTGGGATTCCGTGTGT-AAAACCTGA  144
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  GTCGCAAGGAAAAAGTG-CTCTCTCTGGGATTCCGTGTGTAAAAACCTGA  140

seq1  CGGGAACACTGGCTA-TCAACCAATACTC-AGGGGTTG-AACCAATCCTT  191
      | ||||||||| ||| |||||| |||||| |||||||| |||||||||||
seq2  C-GGAACACTGCCTATTCAACC-ATACTCAAGGGGTTGAAACCAATCCTT  188

seq1  ATTGCCAAG--AAAAAAAAAGAA-CCACTGTGATTAATCAGTCATAAACA  238
      | |||||||  |||||||||||| ||||||||||||||||||||||||||
seq2  A-TGCCAAGAAAAAAAAAAAGAACCCACTGTGATTAATCAGTCATAAACA  237

seq1  TGATGATACTGTCAGGAGAACCGTATATAGGTATCCTTTACAGAATTGGC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATACTGTCAGGAGAACCGTATATAGGTATCCTTTACAGAATTGGC  287

seq1  ACAATGATGATTTCTTAAGATGAAAGGGGATGCTGTGAAGACAGAGGGAG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGATGATTTCTTAAGATGAAAGGGGATGCTGTGAAGACAGAGGGAG  337

seq1  CGAGGTACTCCTGTTATTTCTGCCCTCAGTAGGTTTGGCACAAGGTTCAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTACTCCTGTTATTTCTGCCCTCAGTAGGTTTGGCACAAGGTTCAA  387

seq1  GGCCAACCTGAGCAACATAATGAGACCTTGTCTAGAAAGAGCAGGAAAGA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACCTGAGCAACATAATGAGACCTTGTCTAGAAAGAGCAGGAAAGA  437

seq1  GAAGGATGTGATATTGTGCAAACAAAACATGATGGTTCATCAGACATCCA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATGTGATATTGTGCAAACAAAACATGATGGTTCATCAGACATCCA  487

seq1  TTTTCTTAGTACCCTAAAACTATTACTAGTTTTTAATTGTAGACCTAATT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAGTACCCTAAAACTATTACTAGTTTTTAATTGTAGACCTAATT  537

seq1  ATGCTAAAAGCTTAATGTATCCAGAGTATGGTTATATCAAGATACGTTGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAAAGCTTAATGTATCCAGAGTATGGTTATATCAAGATACGTTGA  587

seq1  AGTGTCTTGTGAACCATTCCTAGTTGTAGCTTCTTGCAAAACAAAACAAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTGTGAACCATTCCTAGTTGTAGCTTCTTGCAAAACAAAACAAG  637

seq1  AGAAGAAAAAAAAAAGAAAACGGTTTCAAAATCTGATTGTTGATGAGATT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAAAAAAAGAAAACGGTTTCAAAATCTGATTGTTGATGAGATT  687

seq1  CTTTATTTCTCATTTATGCCCTCTGTCCACTGCTGCGTGAAAACAAATGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTCTCATTTATGCCCTCTGTCCACTGCTGCGTGAAAACAAATGA  737

seq1  ATAAGTAAGTAGAAAGCAGCTACTAAGAGAGTAAGAGACTGCTGATCCTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAAGTAGAAAGCAGCTACTAAGAGAGTAAGAGACTGCTGATCCTC  787

seq1  CAGGAGTCAAAATAATGGTCACTTCAGTCATGTGAGAATTTGAATCCAAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTCAAAATAATGGTCACTTCAGTCATGTGAGAATTTGAATCCAAG  837

seq1  AGAAGGCATAGACAGCATCCTTTTTCTTCTTGTTTATCAAGATGGACACC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCATAGACAGCATCCTTTTTCTTCTTGTTTATCAAGATGGACACC  887

seq1  TGGGAACTACTTGGCAAATGGTGTCACACACATGCCTTTGATTCTCTGTC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTACTTGGCAAATGGTGTCACACACATGCCTTTGATTCTCTGTC  937

seq1  TTCTACCATGCTCTTTGGCACCCATCCATTAAACACACACTGGAGGTTCA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCATGCTCTTTGGCACCCATCCATTAAACACACACTGGAGGTTCA  987

seq1  TATGTATGAGAACAAGAATAAACGCTGCTTTTCATACACAAATCATGGGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGAGAACAAGAATAAACGCTGCTTTTCATACACAAATCATGGGT  1037

seq1  CTTCACCTCCAAAAGTCAACACTCTATTTTCCCACCAGCAAAAACTGCTG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCTCCAAAAGTCAACACTCTATTTTCCCACCAGCAAAAACTGCTG  1087

seq1  GGGTACTGAGATGGCTCACCAGGTAGAGATGCCTACCATGAAGCCTGAGG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTGAGATGGCTCACCAGGTAGAGATGCCTACCATGAAGCCTGAGG  1137

seq1  GCCTGAATTC  1148
      ||||||||||
seq2  GCCTGAATTC  1147