BAC Information

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BAC

Clone NameB6Ng01-246E03
Chromosome6 (Build37)12 (Build37)
Map Location 11,005,327 - 11,006,46830,377,561 - 30,377,897
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC330264, LOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246E03.bB6Ng01-246E03.g
ACCGA054921GA054922
length1,145584
definitionB6Ng01-246E03.b B6Ng01-246E03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,005,327 - 11,006,468)(30,377,561 - 30,377,897)
sequence
gaattcacttctgtacttgccaggcactggcatagcctcatacagctata
acagggtcccttcagcaaaatctttctggcatatgcaatagtgtctgggt
ttggtggctgattatgggttggatccccgggtggagtagtctctggatag
tgcatccttttgtcttagctccaaactttgtctctgtaacccctttcatg
tgtagtttgttcccaatctaaggaggaatgaagtatccacccattggtct
tccctcttcttgattttcttgtgttttgcaaattgtatcttgggtgttct
atgtttctgtgctaatatccacttatcagtgagtgaatatctaataactt
ctttgtaattgggttatttcactaaggatgatatcctccagatacatcca
tttttccaaaattctcataaatccattgtttttaatttctgagtagtact
ccaatatattgatttcttcagctatgcaactcctggtaagaaataatcat
gtcaattctatgaagccttggaaactaaggcctgtgtatctcagactctg
tagcatgctagtaatttcaacatatgcagaatggtgaaagaaccttccaa
agcagaggaatggagaggacagaagcaaacccacaggtatctggaaactt
gatacataacatagatggactgaactgcaagccagtgagtaacaatacag
gtacatggggaaaaagataatgaataaggaagtgttgtcaaacagggaag
aaacatatagtaaatataaaagactaactctgaattctgatataaaacat
atagaaaataatatctcagaataatgagacaacattataaaaaccaaaaa
ttttttagaagaattttgaacatatttcatgatgtcaacatgaaccaata
tttatggggattcagcatgagctactgtgctttaaacactttgacattta
agaaaacattagaaacaaagttcttgtctctcctctgctctcttcatggt
aactcatacatctttctcccagagctcttcttctgtacttgcttttattt
tctaagaaacggacatagagttcaagcaatcgcgtcttgttcttatcaaa
tcactgtttttttcttagcctgcctcatattttatcagaccttaa

gaattcactgttgtaagagttgaagactcagaaatgttatttgacccagt
gttcatatatagttctaaatttcatattaataagcttgtattacttgaag
caacacttctacagaaaaccatatcaagtgcaaaaaactcagtgcctggt
actctgcatgtatcttgtgtctctgtctctttgtgtgtgtgtgtgtgtgt
gtgtttgtgaatgtgtgtatgtctttttgagttgttggtcagtgttgtcc
cattgacttcctcagaaacaaacattagtctattactattcttcctggtt
accctccagaacttggtagtaggacctaatttctgaagactgtgacagat
agcatgcaccagaccgtgatagctcaaattccagcttagttagggggggg
ggctcctgaaaccctatcccacgtggaagagatattgacaattagtggct
aatttagggctttagtgttcttcatagagaagatgctccatgagatggtc
ctacgtccattcacatagctaactctaagtagactcggtgaggttttttt
ttttgttttgttttttgggttttttggggttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_11005327_11006468
seq2: B6Ng01-246E03.b_42_1186

seq1  GAATTCACTTCTGTACTTGCCAGGCACTGGCATAGCCTCATACAGCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTGTACTTGCCAGGCACTGGCATAGCCTCATACAGCTATA  50

seq1  ACAGGGTCCCTTCAGCAAAATCTTTCTGGCATATGCAATAGTGTCTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTCCCTTCAGCAAAATCTTTCTGGCATATGCAATAGTGTCTGGGT  100

seq1  TTGGTGGCTGATTATGGGTTGGATCCCCGGGTGGAGTAGTCTCTGGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGCTGATTATGGGTTGGATCCCCGGGTGGAGTAGTCTCTGGATAG  150

seq1  TGCATCCTTTTGTCTTAGCTCCAAACTTTGTCTCTGTAACCCCTTTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTTTTGTCTTAGCTCCAAACTTTGTCTCTGTAACCCCTTTCATG  200

seq1  TGTAGTTTGTTCCCAATCTAAGGAGGAATGAAGTATCCACCCATTGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTGTTCCCAATCTAAGGAGGAATGAAGTATCCACCCATTGGTCT  250

seq1  TCCCTCTTCTTGATTTTCTTGTGTTTTGCAAATTGTATCTTGGGTGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTTCTTGATTTTCTTGTGTTTTGCAAATTGTATCTTGGGTGTTCT  300

seq1  ATGTTTCTGTGCTAATATCCACTTATCAGTGAGTGAATATCTAATAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTGTGCTAATATCCACTTATCAGTGAGTGAATATCTAATAACTT  350

seq1  CTTTGTAATTGGGTTATTTCACTAAGGATGATATCCTCCAGATACATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAATTGGGTTATTTCACTAAGGATGATATCCTCCAGATACATCCA  400

seq1  TTTTTCCAAAATTCTCATAAATCCATTGTTTTTAATTTCTGAGTAGTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAAAATTCTCATAAATCCATTGTTTTTAATTTCTGAGTAGTACT  450

seq1  CCAATATATTGATTTCTTCAGCTATGCAACTCCTGGTAAGAAATAATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATATTGATTTCTTCAGCTATGCAACTCCTGGTAAGAAATAATCAT  500

seq1  GTCAATTCTATGAAGCCTTGGAAACTAAGGCCTGTGTATCTCAGACTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTCTATGAAGCCTTGGAAACTAAGGCCTGTGTATCTCAGACTCTG  550

seq1  TAGCATGCTAGTAATTTCAACATATGCAGAATGGTGAAAGAACCTTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGCTAGTAATTTCAACATATGCAGAATGGTGAAAGAACCTTCCAA  600

seq1  AGCAGAGGAATGGAGAGGACAGAAGCAAACCCACAGGTATCTGGAAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGAATGGAGAGGACAGAAGCAAACCCACAGGTATCTGGAAACTT  650

seq1  GATACATAACATAGATGGACTGAACTGCAAGCCAGTGAGTAACAATACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATAACATAGATGGACTGAACTGCAAGCCAGTGAGTAACAATACAG  700

seq1  GTACATGGGGAAAAAGATAATGAATAAGGAAGTGTTGTCAAACAGGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGGGGAAAAAGATAATGAATAAGGAAGTGTTGTCAAACAGGGAAG  750

seq1  AAACATATAGTAAATATAAAAGACTAACTCTGAATTCTGATATAAAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATAGTAAATATAAAAGACTAACTCTGAATTCTGATATAAAACAT  800

seq1  ATAGAAAATAATATCTCAGAATAATGAGACAACATTATAAAAACCAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAATAATATCTCAGAATAATGAGACAACATTATAAAAACCAAAAA  850

seq1  TTTTTTAGAAGAATTTTGAACATATTTCATGATGTCAACATGAACCAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGAAGAATTTTGAACATATTTCATGATGTCAACATGAACCAATA  900

seq1  TTTAT-GGGATTCAGCATGAGCTACTGTGCTTAAAACACTTTGACATTTA  949
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTATGGGGATTCAGCATGAGCTACTGTGCTTTAAACACTTTGACATTTA  950

seq1  AGAAAACATTAGAAACAAAGTTTCTTGTCTCTCCTCTGCTCTCTTCATGG  999
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGAAAACATTAGAAACAAAG-TTCTTGTCTCTCCTCTGCTCTCTTCATGG  999

seq1  TAACTCATACAATCTTTCTCCCAGAAGCTCCTTCTCTGTACTTGCTTTTA  1049
      |||||||||| ||||||||||||| ||||| |  ||||||||||||||||
seq2  TAACTCATAC-ATCTTTCTCCCAG-AGCTCTTCTTCTGTACTTGCTTTTA  1047

seq1  TTTCTAAAGAAACCGGGACATAGAG-TCAAGCAATCGCGTCTTG-TCTTA  1097
      |||   |||||||  |||||||||| |||||||||||||||||| |||||
seq2  TTTTCTAAGAAAC--GGACATAGAGTTCAAGCAATCGCGTCTTGTTCTTA  1095

seq1  TCAAATCACTG--TTTTTCTTAG-CTG-CTCATATTTTATCAGA-CTTAA  1142
      |||||||||||  |||||||||| ||| |||||||||||||||| |||||
seq2  TCAAATCACTGTTTTTTTCTTAGCCTGCCTCATATTTTATCAGACCTTAA  1145


seq1: chr12_30377561_30377897
seq2: B6Ng01-246E03.g_248_650

seq1  TGTGTGTGTGTGTGTGTGTGTGTTT-----TATTTGTGACTCTTCCTGCC  45
      |||||||||||||||||||||||||     | | |||   ||||  ||  
seq2  TGTGTGTGTGTGTGTGTGTGTGTTTGTGAATGTGTGTATGTCTTTTTGAG  50

seq1  TT----------------AAATTATATTTCT-------ACACAT--GGCT  70
      ||                  |||   || ||       | ||||  | ||
seq2  TTGTTGGTCAGTGTTGTCCCATTGACTTCCTCAGAAACAAACATTAGTCT  100

seq1  GATTTCGTTTTTTCATGAACAAGAAAAAGAGACAAGAGAGGCAGACCAAA  120
       ||| |  || ||| ||   |      ||| ||  |  ||   |||| ||
seq2  -ATTACTATTCTTCCTGGTTACCCTCCAGA-ACTTGGTAGTAGGACCTAA  148

seq1  AT--TGAAAA-----ACAATT--CTTTATTTACACAGCTAT-CATCTAAT  160
       |  |||| |     |||  |  | |     | || |  ||   || |||
seq2  TTTCTGAAGACTGTGACAGATAGCATGCACCAGACCGTGATAGCTCAAAT  198

seq1  ACAATATTAATTA---AAAATTAATCCAGATACCTGTTC-----TGG---  199
       | |  ||| |||           ||| || |||   ||     |||   
seq2  TCCAGCTTAGTTAGGGGGGGGGGCTCCTGAAACCCTATCCCACGTGGAAG  248

seq1  -----TTGCTACCTATATGTT--TTTGGGGCCTCCCTCCTCTT-----AG  237
           |||  |  ||   | |  ||| |||| |   |  ||||     ||
seq2  AGATATTGACAATTAGTGGCTAATTTAGGGCTTTAGTGTTCTTCATAGAG  298

seq1  AACAT--TTCAT-AATTGG--------CATTTGACTTAAAATTACTTTAT  276
      || ||  | ||| |  |||        |  || || | |  | ||| || 
seq2  AAGATGCTCCATGAGATGGTCCTACGTCCATTCACAT-AGCTAACTCTA-  346

seq1  ATTTTTCTCTGCTAGGTTTTGGGGGTTTTGGGGT-TTTTTTGGGTTTTTT  325
      | |   ||| |  |||||||     |||||   | |||||||||||||||
seq2  AGTAGACTCGGTGAGGTTTT--TTTTTTTGTTTTGTTTTTTGGGTTTTTT  394

seq1  GTTGTTGTTTTT  337
      |  ||| ||   
seq2  GGGGTTTTT---  403


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