BAC Information

Click to search

BAC

Clone NameB6Ng01-246J05
Chromosome6 (Build37)
Map Location 46,400,987 - 46,402,149
singlet/doubletsinglet
Overlap geneCntnap2
Upstream genenone
Downstream geneRbpsuh-rs3, LOC622745, LOC100041064, LOC100041078, A930035D04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246J05.bB6Ng01-246J05.g
ACCGA055156GA055157
length1,1761,141
definitionB6Ng01-246J05.b B6Ng01-246J05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtaccccattttttaatttttatttgagtcc
agcttcttgagctctttatatatattgggtattagtcccctttcagattt
aggattggtaaaaatccttttccaatctgttggtgtcctttttgtcttat
tgacagtgtcttttgtctaacagaagctttgcaattttatgaggtcccat
ttgtcaattcttgatcttacagcacaagtcattgctgttctgtttaggaa
tttttcccctgtgcccatatctttgaggctttttcccactttcttctcta
ttaatttcagtgtctctggttttatgtggcattccttgatccacttacac
ttgagctttttacaaggagataagaatggatcaatttgaattcttctaca
tgataactggcagttttgccagcaccatttgctgaaaatgctgtcttttt
tccactggatggttttagctcccttgtctaagatcaagtgacaataggtg
tgtggattcatttcttggtcttcgattctattctattgatctacctgtct
gtcattgtaccagtaccatgcagtttttatcacaattgttctgtagacaa
gcttagtatcagacatggtgattcattccaccagaggttctttttttgtt
gagaatagtttttgctatcctatgtttttttattatttcagatgaattta
caaatttcccttcctatctcagtgaagaattgagttggaatgttgttggg
aattgcattgaatctatagattgctttcagaaaggatagccattttgatt
atattaatcctgctaatccatgagcatgggagatctttccatcttctgag
attttcttcaatttcttttctttagacatttgaagttcttatcatttcag
atcttttacttccttagttagagtctcaccaaggtattttatattatttg
tgactattgtgaaggtgctgtttcctaatttcttctcagtgcatttatcc
tttgtgtagaagaaagcaatgatttgtttgagtaatttatatccagctat
gcactgactgtttatcgattttaggagtttctgctgaattttgggtcaat
aaataactatctattattggcaaagtgattatgtactacttctcaatttg
aatccccttgatagtgctcatttggt

gaattccacatttactacctttacaaccagcaatgtggtctggagagaaa
ttactttagttctttaggcatttgtttataaaaatagatttatttaattt
tatgtgtatgaggttttacatacatgtatgtctatgtactgtgtatattc
cgagtactcgtagaaacaagaaaagttgttggagctcatagaactggagt
tactgatagttgtgagcagtcatgtgggtcctaggaagagaagctgggtc
atcttcaagagcagaaaatgtccctaaccttgagctataaatccagtccc
aggtttttgctttttaagccaagcaaaaaggaagaactcgtttgtcctaa
ggaaacattttattccacatgcctatggttctactaatatgatagcaaaa
attctttttaatttatattttaagcaaataggtaaaaaataataaatgtt
taaaatacaggattacattttggagtctgaacattctctttaggtttcaa
atgccaattattttctatatgaagcaatcaccttatccctttataatgca
gagcagtgttcttgatttaatggctagttgctatgtcccctttgttatct
ctacaattaaagaagctgtaaaaccagaccatgaaccagtatagatgcct
gaaccatgaataagtgatgaggcccctgtcaatagaccagctgctggcca
gcacttgtgaggttgtctgaattattgatgccataccacagctcccatca
atggcagttctctgaggaggctcacaaagtctgtctgttaacatcaggct
ggcacagctgtctttttgttactgtgtaatgaaataccttatatggacaa
ctctgattaccttgattccaattgattattgtactgataagggaagaaag
tttttatagggttaacaattttcttagacagtcaagaattaaaactttga
ggcatatttctcatttgtattaaagtcattcaatctctgggcacatatca
gagggtatatggggtgacacacacatgagatctagcatgtacatgttgat
tttgaggaaactcttccagcagtagcgaactctgttgagccttgtgaatc
tcagtgaaggctaggtatgaaacttcttctctgggatgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_46400987_46402149
seq2: B6Ng01-246J05.g_67_1207 (reverse)

seq1  TCTCATCCCAG-GAAGAGATGTTCATCTCTAGCCTTCCAACTGGAGATTT  49
      ||||||||||| ||||| |  |||||  |||||||||  ||| |||||| 
seq2  TCTCATCCCAGAGAAGA-AGTTTCATACCTAGCCTTC--ACT-GAGATT-  45

seq1  TTCAAACAAAGCTTCAACAAGGAG-TCGCTACTGCTGGAAGAGGTTTTCC  98
           |||| || ||||||  ||| ||||||||||||||||||   || |
seq2  ----CACAAGGC-TCAACA--GAGTTCGCTACTGCTGGAAGAG---TTTC  85

seq1  CTCAAAAATCACCATGTACCATGCTAGAATCTCAATGTGTGTGTCCACCC  148
      ||| ||||||| |||||| |||||||| ||||| |||||||||| |||||
seq2  CTC-AAAATCAACATGTA-CATGCTAG-ATCTC-ATGTGTGTGT-CACCC  130

seq1  CATATACCCTCTGAATATGGTGCCCCAGAGATTTGAATGACTTAATAACA  198
      ||||||||||||| |||| ||| |||||||| ||||||||||| |  |||
seq2  CATATACCCTCTG-ATAT-GTG-CCCAGAGA-TTGAATGACTTTAATACA  176

seq1  AATGAGAAATATTGCCTC-AAGTTTTAATTCTTGACTGTCTAAGAAAATT  247
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  AATGAGAAATA-TGCCTCAAAGTTTTAATTCTTGACTGTCTAAGAAAATT  225

seq1  GTTAA-CCTATAAAAACTTTCTTCCCTTTATCAGTACAATAATCAATTGG  296
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  GTTAACCCTATAAAAACTTTCTTCCC-TTATCAGTACAATAATCAATTGG  274

seq1  AATCAAGGTAATCAGAGTTGTCCATATAAGGTATTTCATTACACAGTAAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGGTAATCAGAGTTGTCCATATAAGGTATTTCATTACACAGTAAC  324

seq1  AAAAAGACAGCTGTGCCAGCCTGATGTTAACAGACAGACTTTGTGAGCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACAGCTGTGCCAGCCTGATGTTAACAGACAGACTTTGTGAGCCT  374

seq1  CCTCAGAGAACTGCCATTGATGGGAGCTGTGGTATGGCATCAATAATTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGAACTGCCATTGATGGGAGCTGTGGTATGGCATCAATAATTCA  424

seq1  GACAACCTCACAAGTGCTGGCCAGCAGCTGGTCTATTGACAGGGGCCTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCTCACAAGTGCTGGCCAGCAGCTGGTCTATTGACAGGGGCCTCA  474

seq1  TCACTTATTCATGGTTCAGGCATCTATACTGGTTCATGGTCTGGTTTTAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTATTCATGGTTCAGGCATCTATACTGGTTCATGGTCTGGTTTTAC  524

seq1  AGCTTCTTTAATTGTAGAGATAACAAAGGGGACATAGCAACTAGCCATTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTTTAATTGTAGAGATAACAAAGGGGACATAGCAACTAGCCATTA  574

seq1  AATCAAGAACACTGCTCTGCATTATAAAGGGATAAGGTGATTGCTTCATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGAACACTGCTCTGCATTATAAAGGGATAAGGTGATTGCTTCATA  624

seq1  TAGAAAATAATTGGCATTTGAAACCTAAAGAGAATGTTCAGACTCCAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATAATTGGCATTTGAAACCTAAAGAGAATGTTCAGACTCCAAAA  674

seq1  TGTAATCCTGTATTTTAAACATTTATTATTTTTTACCTATTTGCTTAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCCTGTATTTTAAACATTTATTATTTTTTACCTATTTGCTTAAAA  724

seq1  TATAAATTAAAAAGAATTTTTGCTATCATATTAGTAGAACCATAGGCATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTAAAAAGAATTTTTGCTATCATATTAGTAGAACCATAGGCATG  774

seq1  TGGAATAAAATGTTTCCTTAGGACAAACGAGTTCTTCCTTTTTGCTTGGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAAAATGTTTCCTTAGGACAAACGAGTTCTTCCTTTTTGCTTGGC  824

seq1  TTAAAAAGCAAAAACCTGGGACTGGATTTATAGCTCAAGGTTAGGGACAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGCAAAAACCTGGGACTGGATTTATAGCTCAAGGTTAGGGACAT  874

seq1  TTTCTGCTCTTGAAGATGACCCAGCTTCTCTTCCTAGGACCCACATGACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTCTTGAAGATGACCCAGCTTCTCTTCCTAGGACCCACATGACT  924

seq1  GCTCACAACTATCAGTAACTCCAGTTCTATGAGCTCCAACAACTTTTCTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAACTATCAGTAACTCCAGTTCTATGAGCTCCAACAACTTTTCTT  974

seq1  GTTTCTACGAGTACTCGGAATATACACAGTACATAGACATACATGTATGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTACGAGTACTCGGAATATACACAGTACATAGACATACATGTATGT  1024

seq1  AAAACCTCATACACATAAAATTAAATAAATCTATTTTTATAAACAAATGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTCATACACATAAAATTAAATAAATCTATTTTTATAAACAAATGC  1074

seq1  CTAAAGAACTAAAGTAATTTCTCTCCAGACCACATTGCTGGTTGTAAAGG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAACTAAAGTAATTTCTCTCCAGACCACATTGCTGGTTGTAAAGG  1124

seq1  TAGTAAATGTGGAATTC  1163
      |||||||||||||||||
seq2  TAGTAAATGTGGAATTC  1141


| Home | SequenceCutter | Blast | Download |