BAC Information

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BAC

Clone NameB6Ng01-247G08
Chromosome6 (Build37)
Map Location 48,691,984 - 48,856,078
singlet/doubletdoublet
Overlap geneGimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1
Upstream geneEG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450
Downstream gene1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247G08.bB6Ng01-247G08.g
ACCGA055741GA055742
length1,135853
definitionB6Ng01-247G08.b B6Ng01-247G08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,854,957 - 48,856,078)(48,691,984 - 48,692,824)
sequence
gaattccccccggggcttgtaggaagagaagagtggtggctgctctgtgg
cacccggcagtgggtcctcgagaaccacttcctccagaaccactgcctcc
acttctccaactgcgtatttctgagccagttcctctgggctgttgtagaa
cttgccgttataccagagctgttccactctccagtcctggacatctgtgc
tgctatgatctacaaggatctccagccctgtgggatgcaggaagtagcct
tccacatagcgctgcacgataagccagcttctacgctgaccagactccac
accacgcggcgctacatccgtaaaagtcaagaaccggtcatcgcagccta
ggaatgagaagccagtagtgtcaaggaaaaactggtgcagaggcgtgatg
gctctgttcagcatgtggtagaggaggtcatactccgctgtggagatggg
tcttgatgaccaggacagatggtgccctggcctgggggacagtgcttgaa
catagcagggccgtggcaggggccccacagcaaactcagtgacattgggg
tgatcctgggcaccgaagaagatgatggccctggcttcccggacaggact
ttttcttccttcatccaaaaatttcagcacattcttcttttttggcagta
gcatctcaatgagaaacacggagttcttggccaaagtcagattcttggat
gactccagccccagctcctttctgctcatcaggaagctgtgcacagcctt
tatctcctgggggctcaggtctgcaaatatccttgctttgtcatgaggag
tcgtcacagcagatgctgtgtctgccgtctgtagaagtaatatgacagct
gcccagccgaaggccagactcatctgtgccagcctcatggctctggaaga
cagcagaggggaggagaggacttgagtataactcctcaactgactgagcg
cctcataagaagcttttcccctcagccccagcatgtcctcaccactgggc
tgtcccctggtgatttcacacagaaggcaggaatggggtctgtgggtccc
tcctcactcatggttcctgacgcctcttctgatctctgatcatgctttcc
gcctggccttctcttctcttctggttctacctctt
gaattctcttctctaactctcgaacaaccttgagaaagccccatgtgtca
aagctttgagttgtgtcctagactgagcacttcctgcgtttacacaggga
acacgtggtaggctgcagccaaccccaattgtctaggattgaggggctcc
cctgtgcttgatggtccgcatctcagagtgggggttgggggcgggggaag
gaaccctggtgtctcaattcagcatcaggtcggcctgtgttcaggaccag
agaccctggtgaacccaggagttataaaggaatattttgtgaaacgtcag
caggagcatctgcaggtgcacagagaatccaaatgcagaaaggagagacg
gggaagaacctgagctcagagaacccaaagcagatgggagcaccaggctt
ccaaggagaacaggcaatgtgggtccttcccttgtatgctgaaggcttga
atacaagtctttcccagaggaaagcctgtgtctctgactcaatgctgcca
catctgatcctcaggctcagaggactccagggccccgcagatgccccagc
tgaggctcatcctagtgggcaggactgggaccggcaagagtgccactggc
aacagcatcctgggtcagaagtgcttcctgtccaggctgggggcggtgcc
tgtcaccagaagtttgcacttttggccagcagaatgtgggccggctggca
ggtggaggtggtggacacccccgggatatctttcagctcgagatcccgcg
ggaccgaccctgggttgcgtaggagacagcccgcttgctttgtgctgtcg
gctcctggtgccgcacgcgctgctgcctggtcacccaggctgaggtcgct
tca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_48854957_48856078
seq2: B6Ng01-247G08.b_45_1179 (reverse)

seq1  AAGAGGTAGA--CAGAAGAGAAGAGAA-GCCA-GCGG-AAGCATGAACAG  45
      ||||||||||  ||||||||||||||| |||| |||| |||||||| |||
seq2  AAGAGGTAGAACCAGAAGAGAAGAGAAGGCCAGGCGGAAAGCATGATCAG  50

seq1  AGGACCAG-AGA-GCGTCAGGAACCATGAGTGAGGA-GGACCCACAGACC  92
      | || ||| ||| ||||||||||||||||||||||| |||||||||||||
seq2  A-GATCAGAAGAGGCGTCAGGAACCATGAGTGAGGAGGGACCCACAGACC  99

seq1  CCATCCCTGCCTTCTGTGTG-AATCA-CAGGGGACAG-CCAGTGGTGAGG  139
      |||| ||||||||||||||| ||||| |||||||||| ||||||||||||
seq2  CCATTCCTGCCTTCTGTGTGAAATCACCAGGGGACAGCCCAGTGGTGAGG  149

seq1  ACATGCTGGGGCTGAGGGG-AAAGCTTC-TATGAGGCGCTCAGTCAGTTG  187
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  ACATGCTGGGGCTGAGGGGAAAAGCTTCTTATGAGGCGCTCAGTCAGTTG  199

seq1  AGG-GTTATACTCAAGTCCTCTCCTCCCCTCTGCTGTCTTCCAGAGCCAT  236
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTATACTCAAGTCCTCTCCTCCCCTCTGCTGTCTTCCAGAGCCAT  249

seq1  GAGGCTGGCACAGATGAGTCTGGCCTTCGGCTGGGCAGCTGTCATATTAC  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGCACAGATGAGTCTGGCCTTCGGCTGGGCAGCTGTCATATTAC  299

seq1  TTCTACAGACGGCAGACACAGCATCTGCTGTGACGACTCCTCATGACAAA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGACGGCAGACACAGCATCTGCTGTGACGACTCCTCATGACAAA  349

seq1  GCAAGGATATTTGCAGACCTGAGCCCCCAGGAGATAAAGGCTGTGCACAG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGATATTTGCAGACCTGAGCCCCCAGGAGATAAAGGCTGTGCACAG  399

seq1  CTTCCTGATGAGCAGAAAGGAGCTGGGGCTGGAGTCATCCAAGAATCTGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGATGAGCAGAAAGGAGCTGGGGCTGGAGTCATCCAAGAATCTGA  449

seq1  CTTTGGCCAAGAACTCCGTGTTTCTCATTGAGATGCTACTGCCAAAAAAG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCCAAGAACTCCGTGTTTCTCATTGAGATGCTACTGCCAAAAAAG  499

seq1  AAGAATGTGCTGAAATTTTTGGATGAAGGAAGAAAAAGTCCTGTCCGGGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTGCTGAAATTTTTGGATGAAGGAAGAAAAAGTCCTGTCCGGGA  549

seq1  AGCCAGGGCCATCATCTTCTTCGGTGCCCAGGATCACCCCAATGTCACTG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCCATCATCTTCTTCGGTGCCCAGGATCACCCCAATGTCACTG  599

seq1  AGTTTGCTGTGGGGCCCCTGCCACGGCCCTGCTATGTTCAAGCACTGTCC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTGTGGGGCCCCTGCCACGGCCCTGCTATGTTCAAGCACTGTCC  649

seq1  CCCAGGCCAGGGCACCATCTGTCCTGGTCATCAAGACCCATCTCCACAGC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCCAGGGCACCATCTGTCCTGGTCATCAAGACCCATCTCCACAGC  699

seq1  GGAGTATGACCTCCTCTACCACATGCTGAACAGAGCCATCACGCCTCTGC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATGACCTCCTCTACCACATGCTGAACAGAGCCATCACGCCTCTGC  749

seq1  ACCAGTTTTTCCTTGACACTACTGGCTTCTCATTCCTAGGCTGCGATGAC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTTTTCCTTGACACTACTGGCTTCTCATTCCTAGGCTGCGATGAC  799

seq1  CGGTTCTTGACTTTTACGGATGTAGCGCCGCGTGGTGTGGAGTCTGGTCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTCTTGACTTTTACGGATGTAGCGCCGCGTGGTGTGGAGTCTGGTCA  849

seq1  GCGTAGAAGCTGGCTTATCGTGCAGCGCTATGTGGAAGGCTACTTCCTGC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAGAAGCTGGCTTATCGTGCAGCGCTATGTGGAAGGCTACTTCCTGC  899

seq1  ATCCCACAGGGCTGGAGATCCTTGTAGATCATAGCAGCACAGATGTCCAG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACAGGGCTGGAGATCCTTGTAGATCATAGCAGCACAGATGTCCAG  949

seq1  GACTGGAGAGTGGAACAGCTCTGGTATAACGGCAAGTTCTACAACAGCCC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGAGTGGAACAGCTCTGGTATAACGGCAAGTTCTACAACAGCCC  999

seq1  AGAGGAACTGGCTCAGAAATACGCAGTTGGAGAAGTGGAGGCAGTGGTTC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAACTGGCTCAGAAATACGCAGTTGGAGAAGTGGAGGCAGTGGTTC  1049

seq1  TGGAGGAAGTGGTTCTCGAGGACCCACTGCCGGGTGCCACAGAGCAGCCA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAGTGGTTCTCGAGGACCCACTGCCGGGTGCCACAGAGCAGCCA  1099

seq1  CCACTCTTCTCTTCCTACAAGCCCCGGGGGGAATTC  1122
      ||||||||||||||||||||||||||||||||||||
seq2  CCACTCTTCTCTTCCTACAAGCCCCGGGGGGAATTC  1135

seq1: chr6_48691984_48692824
seq2: B6Ng01-247G08.g_67_919

seq1  GAATTCTCTTCTCTAACTCTCGAACAACCTTGAGAAAGCCCCATGTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTCTAACTCTCGAACAACCTTGAGAAAGCCCCATGTGTCA  50

seq1  AAGCTTTGAGTTGTGTCCTAGACTGAGCACTTCCTGCGTTTACACAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTGAGTTGTGTCCTAGACTGAGCACTTCCTGCGTTTACACAGGGA  100

seq1  ACACGTGGTAGGCTGCAGCCAACCCCAATTGTCTAGGATTGAGGGGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGGTAGGCTGCAGCCAACCCCAATTGTCTAGGATTGAGGGGCTCC  150

seq1  CCTGTGCTTGATGGTCCGCATCTCAGAGTGGGGGTTGGGGGCGGGGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCTTGATGGTCCGCATCTCAGAGTGGGGGTTGGGGGCGGGGGAAG  200

seq1  GAACCCTGGTGTCTCAATTCAGCATCAGGTCGGCCTGTGTTCAGGACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTGGTGTCTCAATTCAGCATCAGGTCGGCCTGTGTTCAGGACCAG  250

seq1  AGACCCTGGTGAACCCAGGAGTTATAAAGGAATATTTTGTGAAACGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGGTGAACCCAGGAGTTATAAAGGAATATTTTGTGAAACGTCAG  300

seq1  CAGGAGCATCTGCAGGTGCACAGAGAATCCAAATGCAGAAAGGAGAGACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCATCTGCAGGTGCACAGAGAATCCAAATGCAGAAAGGAGAGACG  350

seq1  GGGAAGAACCTGAGCTCAGAGAACCCAAAGCAGATGGGAGCACCAGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAACCTGAGCTCAGAGAACCCAAAGCAGATGGGAGCACCAGGCTT  400

seq1  CCAAGGAGAACAGGCAATGTGGGTCCTTCCCTTGTATGCTGAAGGCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGAACAGGCAATGTGGGTCCTTCCCTTGTATGCTGAAGGCTTGA  450

seq1  ATACAAGTCTTTCCCAGAGGAAAGCCTGTGTCTCTGACTCAATGCTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTCTTTCCCAGAGGAAAGCCTGTGTCTCTGACTCAATGCTGCCA  500

seq1  CATCTGATCCTCAGGCTCAGAGGACTCCAGGGCCCCGCAGATGCCCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGATCCTCAGGCTCAGAGGACTCCAGGGCCCCGCAGATGCCCCAGC  550

seq1  TGAGGCTCATCCTAGTGGGCAGGACTGGGACCGGCAAGAGTGCCACTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTCATCCTAGTGGGCAGGACTGGGACCGGCAAGAGTGCCACTGGC  600

seq1  AACAGCATCCTGGGTCAGAAGTGCTTCCTGTCCAGGCTGGGGGCGGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATCCTGGGTCAGAAGTGCTTCCTGTCCAGGCTGGGGGCGGTGCC  650

seq1  TGTCACCAGAAG-TTGCAC-TTTGGCCAGCAGAATGTGGGCCGGCTGGCA  698
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  TGTCACCAGAAGTTTGCACTTTTGGCCAGCAGAATGTGGGCCGGCTGGCA  700

seq1  GGTGGAGGTGGTGGACACCCC--GGATATC-TTCAGCTCCGAGATCCCGC  745
      |||||||||||||||||||||  ||||||| ||||||| |||||||||||
seq2  GGTGGAGGTGGTGGACACCCCCGGGATATCTTTCAGCT-CGAGATCCCGC  749

seq1  -GGACCGACCCTGGG-TGCGT-GGAGACAGCCCGC-TGCTTTGTGCTGTC  791
       |||||||||||||| ||||| ||||||||||||| ||||||||||||||
seq2  GGGACCGACCCTGGGTTGCGTAGGAGACAGCCCGCTTGCTTTGTGCTGTC  799

seq1  GGCCCCTGG-GCCGCACGCGCTGCTG-CTGGTCACCCA-GCTG-GGTCGC  837
      ||| ||||| |||||||||||||||| ||||||||||| |||| ||||||
seq2  GGCTCCTGGTGCCGCACGCGCTGCTGCCTGGTCACCCAGGCTGAGGTCGC  849

seq1  TTCA  841
      ||||
seq2  TTCA  853