BAC Information

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BAC

Clone NameB6Ng01-247O20
Chromosome6 (Build37)
Map Location 142,396,426 - 142,559,159
singlet/doubletdoublet
Overlap geneGys2, Ldhb, Kcnj8, Abcc9
Upstream genePde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik
Downstream gene5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247O20.bB6Ng01-247O20.g
ACCGA056138GA056139
length1,1271,158
definitionB6Ng01-247O20.b B6Ng01-247O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,396,426 - 142,397,557)(142,558,017 - 142,559,159)
sequence
gaattcattattctttagaattctttatccttttttctggaagatgttaa
gacaatgaagagcttgtaataaactctctcccaagtacatgctgttattt
tttgtttggatgtgtgtacatggacatggggctatgtgttcttgtaggtg
cctgtctgtattgatgtccctgcatttgtgggcacacatgtgtggagagc
agagctcaaccctgggtgttgtttctaaagagctcttcacgttacttttt
gaggtagggtcccacggagcttatcagttaacctgggctggcttgctagt
aggctctggggatctcctggattcccctgagcactggattacaagtgcat
gcctcccgggtaggcttttaccacagagctggaaggtggcctcgacttct
cacgcttgcacagcaagcacttaaccaactgagcctattctgcacgactt
ggaagcagtgcaaagcaaaccaattagttctaccttgactctgtctgcac
gattgttgaaaagtccgattcgtctaatggtgctgaggatgggatccgtg
gaatcatcgatcatattgtgagtggtcacaggaggcaaagactgtctctg
agggaacagagggaagaaacgcatccgtggtgaaaagcattagtaagcgt
gactcatttctgcaaaaggcagtcgatatttcacgcacgctgcctgtact
catcctctgagatgaggctggttaacatgagtaagctttgtgggtttcag
aggaagagaaagagttccagaactttcttcgcagaccatgaacaaaaagc
tgtcccttcctcgaagcaactgtaaggaaggctcgggcatcatgattact
tctggatttatctagaacgtgaaggcacgttggaatcttcacgcagatgg
acgagattcactgggaattgtctagcaaccacactatttacagaggttcc
catgcatgtctaacatgctacattacactttaaataacaattctatccac
tgagagaacggcgttttctcagctgtgggggagattctggcacttttgag
attgtcacaaggttctctgctataatggaacacaggtttcactgaataca
atgattccaagaaatttctgtaagtgg
gaattcccaggcaggttaattagactagaggagttagccagttctgccac
agtaaaggcacttgtcaccacacacacacatacacacacacacacacaca
cacacacacacacacacacacacacacacacacacacacacacaggcata
catatgcaaatgcaaacacatgaaaagaaaaggagaaatagagttaaggc
catctgagttattgtctttccttggttctatggtttctgtgtggaagact
tcatcttgcctaccatattcatttcccattcgcttaggattgagaaagca
taagaaaggttttaacacatccaaggggtgaaagaagggataacgggact
tacttgactggcagacaaatagcaagagcagggccaccctgcttgccttg
gcaggggaaggaactgttttcctatcagtgctgagtgaagtggccagggt
tctgtgtatgtccccagggcctggcctttgaacacagcttacttacgtcc
tctcttcatccctccatattaaacaattccagttctctggcattggtgta
tccatttgcaaaaactgtgtaagtctatctacacacaggctgtggttcca
aggcttggtcgtgatgtgtggtagaaggctgaaagaaaattcccatcaag
aagccaacacaaacaaacaacacaagaagtcagtaggcacgccatgcgga
agtgaaaatagttgcttagtctgtcttcagtctgtttggtgagacagcca
agagctttccagctcctcggtagacagggctgcagtcactgcaatctgag
tccctaatataattttcctgtttcccaagtgctagagaggagacacattt
ctaaggactagtggggaaagggggagtgctatagtgttctgttgcagctg
attgcagagaattacagttttcattaataaccccaagtacagatagatat
catgggctcactgaaattggaccagagctttctctacagccagtagaatc
gagggcttcccttccagaaaaccactggcttttatgtgatcagattacag
ttcaaggagtggctaggaggagcttcctccgaaaagaacaaggacttaat
tcagttccttgtccggcccttcccaacctccgaacaacaagaaagcccag
gcatggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_142396426_142397557
seq2: B6Ng01-247O20.b_45_1171

seq1  GAATTCATTATTCTTTAGAATTCTTTATCCTTTTTTCTGGAAGATGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATTCTTTAGAATTCTTTATCCTTTTTTCTGGAAGATGTTAA  50

seq1  GACAATGAAGAGCTTGTAATAAACTCTCTCCCAAGTACATGCTGTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGAAGAGCTTGTAATAAACTCTCTCCCAAGTACATGCTGTTATTT  100

seq1  TTTGTTTGGATGTGTGTACATGGACATGGGGCTATGTGTTCTTGTAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGATGTGTGTACATGGACATGGGGCTATGTGTTCTTGTAGGTG  150

seq1  CCTGTCTGTATTGATGTCCCTGCATTTGTGGGCACACATGTGTGGAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGTATTGATGTCCCTGCATTTGTGGGCACACATGTGTGGAGAGC  200

seq1  AGAGCTCAACCCTGGGTGTTGTTTCTAAAGAGCTCTTCACGTTACTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCAACCCTGGGTGTTGTTTCTAAAGAGCTCTTCACGTTACTTTTT  250

seq1  GAGGTAGGGTCCCACGGAGCTTATCAGTTAACCTGGGCTGGCTTGCTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGGTCCCACGGAGCTTATCAGTTAACCTGGGCTGGCTTGCTAGT  300

seq1  AGGCTCTGGGGATCTCCTGGATTCCCCTGAGCACTGGATTACAAGTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGGGGATCTCCTGGATTCCCCTGAGCACTGGATTACAAGTGCAT  350

seq1  GCCTCCCGGGTAGGCTTTTACCACAGAGCTGGAAGGTGGCCTCGACTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCGGGTAGGCTTTTACCACAGAGCTGGAAGGTGGCCTCGACTTCT  400

seq1  CACGCTTGCACAGCAAGCACTTAACCAACTGAGCCTATTCTGCACGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTTGCACAGCAAGCACTTAACCAACTGAGCCTATTCTGCACGACTT  450

seq1  GGAAGCAGTGCAAAGCAAACCAATTAGTTCTACCTTGACTCTGTCTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGTGCAAAGCAAACCAATTAGTTCTACCTTGACTCTGTCTGCAC  500

seq1  GATTGTTGAAAAGTCCGATTCGTCTAATGGTGCTGAGGATGGGATCCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTGAAAAGTCCGATTCGTCTAATGGTGCTGAGGATGGGATCCGTG  550

seq1  GAATCATCGATCATATTGTGAGTGGTCACAGGAGGCAAAGACTGTCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATCGATCATATTGTGAGTGGTCACAGGAGGCAAAGACTGTCTCTG  600

seq1  AGGGAACAGAGGGAAGAAACGCATCCGTGGTGAAAAGCATTAGTAAGCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACAGAGGGAAGAAACGCATCCGTGGTGAAAAGCATTAGTAAGCGT  650

seq1  GACTCATTTCTGCAAAAGGCAGTCGATATTTCACGCACGCTGCCTGTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATTTCTGCAAAAGGCAGTCGATATTTCACGCACGCTGCCTGTACT  700

seq1  CATCCTCTGAGATGAGGCTGGTTAACATGAGTAAGCTTTGTGGGTTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTGAGATGAGGCTGGTTAACATGAGTAAGCTTTGTGGGTTTCAG  750

seq1  AGGAAGAGAAAGAGTTCCAGAACTTTCTTCGCAGACCATGAACAAAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGAAAGAGTTCCAGAACTTTCTTCGCAGACCATGAACAAAAAGC  800

seq1  TGTCCCTTCCTCGAAGCAACTGTAAGGAAGGCTCGGGCATCATGATTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTTCCTCGAAGCAACTGTAAGGAAGGCTCGGGCATCATGATTACT  850

seq1  TCTGGATTTATCTAGAACGTGAAGGCACGTTGGAATCTTCACGCAGGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTGGATTTATCTAGAACGTGAAGGCACGTTGGAATCTTCACGCA-GATG  899

seq1  GACGAGATTCACT-GGAATTGTCTAGCAAACCACACTATTAACAGAGGTT  949
      ||||||||||||| ||||||||||||| |||||||||||| |||||||||
seq2  GACGAGATTCACTGGGAATTGTCTAGC-AACCACACTATTTACAGAGGTT  948

seq1  CCCATGCATGTCTAACATGCTACATTACACTTTAAAATAACAATTCTATT  999
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  CCCATGCATGTCTAACATGCTACATTACACTTT-AAATAACAATTCTA-T  996

seq1  CCACTGAGAAGAACGGGCGTTTTCTCAGCTGTGGGGAGGATTCT-GCACT  1048
      |||||||| ||||| |||||||||||||||||||||  |||||| |||||
seq2  CCACTGAG-AGAAC-GGCGTTTTCTCAGCTGTGGGGGAGATTCTGGCACT  1044

seq1  TTTGGAGATTGTCACAAGGTTCTCTGCTATAATGG-ACACAGTTTTTCAA  1097
      ||| ||||||||||||||||||||||||||||||| |||||| |||   |
seq2  TTT-GAGATTGTCACAAGGTTCTCTGCTATAATGGAACACAGGTTT--CA  1091

seq1  CTGAGTACATTGGTTCAAAGAAA-TTCTGTAAGTGG  1132
      |||| |||| || ||| |||||| ||||||||||||
seq2  CTGAATACAATGATTCCAAGAAATTTCTGTAAGTGG  1127

seq1: chr6_142558017_142559159
seq2: B6Ng01-247O20.g_70_1227 (reverse)

seq1  TGCCATGCCTGG--CTTCTTGTGTGTTCTGGGGGGTGGG-AGGGCGGG--  45
      ||||||||||||   ||||||| ||||| || || |||| ||||| ||  
seq2  TGCCATGCCTGGGCTTTCTTGT-TGTTC-GGAGGTTGGGAAGGGCCGGAC  48

seq1  CAGGGACTGGACTAAGTCCTTGT--CTTTCGGAGGAAAGCTCCT-CTAGC  92
       ||| |||| | |||||||||||   ||||||||| |||||||| |||||
seq2  AAGGAACTGAATTAAGTCCTTGTTCTTTTCGGAGG-AAGCTCCTCCTAGC  97

seq1  CAC-CCCTGAACTGTAATCTGATCACAT-AAAGCCAGTG--TTTCTGGAA  138
      ||| || ||||||||||||||||||||| ||||||||||  |||||||||
seq2  CACTCCTTGAACTGTAATCTGATCACATAAAAGCCAGTGGTTTTCTGGAA  147

seq1  GGGAAGCCCTTGATTCCTATTGGCTGTAGAGAAAGCTCTGGTCCAATTTC  188
      |||||||||| |||| ||| ||||||||||||||||||||||||||||||
seq2  GGGAAGCCCTCGATT-CTACTGGCTGTAGAGAAAGCTCTGGTCCAATTTC  196

seq1  AGTGAGCCCATGATATCTATCTGTACTTGGGGTTA-TAATGAAAACTGTA  237
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTGAGCCCATGATATCTATCTGTACTTGGGGTTATTAATGAAAACTGTA  246

seq1  ATTCTCTGCAATCAGCTGCAACAGAACACTATAGC-CTCCCCCTTTCCCC  286
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTCTCTGCAATCAGCTGCAACAGAACACTATAGCACTCCCCCTTTCCCC  296

seq1  ACTAGTCCTTAGAAATGTGTCTCCTCTCTAGCACTTGGG-AACAGGAAAA  335
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTAGTCCTTAGAAATGTGTCTCCTCTCTAGCACTTGGGAAACAGGAAAA  346

seq1  TTATATTAGGGACTCAGATTGCAGTGACTGCAGCCCTGTCTACCGAGGAG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTAGGGACTCAGATTGCAGTGACTGCAGCCCTGTCTACCGAGGAG  396

seq1  CTGGAAAGCTCTTGGCTGTCTCACCAAACAGACTGAAGACAGACTAAGCA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGCTCTTGGCTGTCTCACCAAACAGACTGAAGACAGACTAAGCA  446

seq1  ACTATTTTCACTTCCGCATGGCGTGCCTACTGACTTCTTGTGTTGTTTGT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTCACTTCCGCATGGCGTGCCTACTGACTTCTTGTGTTGTTTGT  496

seq1  TTGTGTTGGCTTCTTGATGGGAATTTTCTTTCAGCCTTCTACCACACATC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGGCTTCTTGATGGGAATTTTCTTTCAGCCTTCTACCACACATC  546

seq1  ACGACCAAGCCTTGGAACCACAGCCTGTGTGTAGATAGACTTACACAGTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCAAGCCTTGGAACCACAGCCTGTGTGTAGATAGACTTACACAGTT  596

seq1  TTTGCAAATGGATACACCAATGCCAGAGAACTGGAATTGTTTAATATGGA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAATGGATACACCAATGCCAGAGAACTGGAATTGTTTAATATGGA  646

seq1  GGGATGAAGAGAGGACGTAAGTAAGCTGTGTTCAAAGGCCAGGCCCTGGG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAAGAGAGGACGTAAGTAAGCTGTGTTCAAAGGCCAGGCCCTGGG  696

seq1  GACATACACAGAACCCTGGCCACTTCACTCAGCACTGATAGGAAAACAGT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACACAGAACCCTGGCCACTTCACTCAGCACTGATAGGAAAACAGT  746

seq1  TCCTTCCCCTGCCAAGGCAAGCAGGGTGGCCCTGCTCTTGCTATTTGTCT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCCTGCCAAGGCAAGCAGGGTGGCCCTGCTCTTGCTATTTGTCT  796

seq1  GCCAGTCAAGTAAGTCCCGTTATCCCTTCTTTCACCCCTTGGATGTGTTA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCAAGTAAGTCCCGTTATCCCTTCTTTCACCCCTTGGATGTGTTA  846

seq1  AAACCTTTCTTATGCTTTCTCAATCCTAAGCGAATGGGAAATGAATATGG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTCTTATGCTTTCTCAATCCTAAGCGAATGGGAAATGAATATGG  896

seq1  TAGGCAAGATGAAGTCTTCCACACAGAAACCATAGAACCAAGGAAAGACA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAGATGAAGTCTTCCACACAGAAACCATAGAACCAAGGAAAGACA  946

seq1  ATAACTCAGATGGCCTTAACTCTATTTCTCCTTTTCTTTTCATGTGTTTG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCAGATGGCCTTAACTCTATTTCTCCTTTTCTTTTCATGTGTTTG  996

seq1  CATTTGCATATGTATGCC----TGTGTGTGTGTGTGTGTGTGTGTGTGTG  1031
      ||||||||||||||||||    ||||||||||||||||||||||||||||
seq2  CATTTGCATATGTATGCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  1046

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGGTGACA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGGTGACA  1096

seq1  AGTGCCTTTACTGTGGCAGAACTGGCTAACTCCTCTAGTCTAATTAACCT  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTTACTGTGGCAGAACTGGCTAACTCCTCTAGTCTAATTAACCT  1146

seq1  GCCTGGGAATTC  1143
      ||||||||||||
seq2  GCCTGGGAATTC  1158