BAC Information

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BAC

Clone NameB6Ng01-248H16
Chromosome6 (Build37)
Map Location 35,751,015 - 35,886,600
singlet/doubletdoublet
Overlap geneLOC100039327
Upstream geneAgbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
Downstream gene9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248H16.bB6Ng01-248H16.g
ACCGA056546GA056547
length1,1331,068
definitionB6Ng01-248H16.b B6Ng01-248H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,751,015 - 35,752,147)(35,885,537 - 35,886,600)
sequence
gaattctgttttctgtagctcacagtgaagagctgggaggtggggcatat
cagcagatggatacaagtcagcttagggagagctgtagagtgggcatttt
agagtagctgagggagatgtggtcaacccaacgtcaggacacactgacaa
ggtttcccacaagaagggctgcctgtgttgctcttcttagcttctaacct
tgtcacctatctgaggctcatttctttgtctgtactttagaattatccgg
gaggctctgaaaacaaaatctgcataccaggctgtgtcccagaacaacta
actcatactccttgaaggtaggaggcagacattttttttttctttttgaa
gttctttgcatgattccaacatttaatcaggtttgactattacattctag
agaagaaattcagcaaactcaaaactagaagagagaaggaccaccgtatg
tttcagagacccctttgctatattctgagtggactggcaggagacaagga
gggatggcgttcagtagaatagaaggcattggctctacttggccaggtcc
aaattgttgggatgtcttcggtctttactaatacaataaactggggagaa
aaagtcacaggttgtgagttgagattcagctgaaagacgatgaaccttaa
ataagctttgtacctgaaaaatcttgggaaatttcaagttttgtcttttg
ttttccagctagcccaatctagcctcagacttgctatatagcaaaggcta
tccttggattcttgactcccttagctcagtcaccaagggtctgggatggc
tggtgtgtgtctctatgctcagggaaagctttcatctcttaaagccgaga
gtagggaaaagggaagagcacatgctcagatgtcagtttccttattacgg
atagtttgtgttagtgcattgtcacaccctgcaaatctattctaagggtt
ttaaggttttttgtttttttcactttaaaattgaggtgagatgggaccag
agacgcctcagagggttacattgatagctaggaatgaccgatgacttaga
attggatctcagattctattgttaaagacctggcagacaagtgcagaatg
agactgaagcagtttagtgaccaccccgaatcg
gaattctaaaatctctatctgtagttgatgggaaagcaaaggaagagatt
taaaaaaaaaaaaaagattcagttattatgagaaattcaaaactgtgcag
gttagatggagctgtgtgtttacctttgtgaaaaaatgaccaggcaaaaa
taagcaactggtctcccagagaagaacaaaattaggtgaggagtcccaga
aacagtgctgaaggagagtgttatcctaggagcacctgcttcctgacatg
atctgtgttctcaactgaatactggattcccttggcccacaaagagctat
gagtccaagagaactaataaaagacggtgggggagcctactgtagctaca
actgccttctacagactttccatccacatgtgttcatgggtcatgtcaga
gacagctcctccactcccactccacgtatctgaaaacatgtcctatggga
tcgttgagtttctgactcccttccaaagcatgtttccttcgagaaatacc
tctttgtttcttaggtgtaagactacaagacgtaggtctctttttagatc
tttattggcatattgattctgtgagtggtcatttaaaaaaaataaaaaga
aaccaatattatttttctttttttttcttgtttttttttttctttttttt
tttttccattttttattaggtatttaactcatttacatttccaatgctat
accaaaagtcccccatatccacccacccccactcccctgcccacccactc
cccctttttggcactggtgttcccctgtactggggcatataaagtttgca
agtccaatgggcctctctttccagtgatggccgactaggccatctttttg
acatatatgcagctagagtcagagctccggggttactggttagttcataa
tgttgttcccacctataggggtgcagatcccttagctccttggcctactt
tctctagcctccttccaatggggagcctatgaatcatcaatagctgactt
gtgagcatcaactctgtgttggctaggccccggcatagtctcacaaggag
accagctactctgggtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35751015_35752147
seq2: B6Ng01-248H16.b_46_1178

seq1  GAATTCTGTTTTCTGTAGCTCACAGTGAAGAGCTGGGAGGTGGGGCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTCTGTAGCTCACAGTGAAGAGCTGGGAGGTGGGGCATAT  50

seq1  CAGCAGATGGATACAAGTCAGCTTAGGGAGAGCTGTAGAGTGGGCATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATGGATACAAGTCAGCTTAGGGAGAGCTGTAGAGTGGGCATTTT  100

seq1  AGAGTAGCTGAGGGAGATGTGGTCAACCCAACGTCAGGACACACTGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGCTGAGGGAGATGTGGTCAACCCAACGTCAGGACACACTGACAA  150

seq1  GGTTTCCCACAAGAAGGGCTGCCTGTGTTGCTCTTCTTAGCTTCTAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCCACAAGAAGGGCTGCCTGTGTTGCTCTTCTTAGCTTCTAACCT  200

seq1  TGTCACCTATCTGAGGCTCATTTCTTTGTCTGTACTTTAGAATTATCCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTATCTGAGGCTCATTTCTTTGTCTGTACTTTAGAATTATCCGG  250

seq1  GAGGCTCTGAAAACAAAATCTGCATACCAGGCTGTGTCCCAGAACAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCTGAAAACAAAATCTGCATACCAGGCTGTGTCCCAGAACAACTA  300

seq1  ACTCATACTCCTTGAAGGTAGGAGGCAGACATTTTTTTTTTCTTTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATACTCCTTGAAGGTAGGAGGCAGACATTTTTTTTTTCTTTTTGAA  350

seq1  GTTCTTTGCATGATTCCAACATTTAATCAGGTTTGACTATTACATTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTGCATGATTCCAACATTTAATCAGGTTTGACTATTACATTCTAG  400

seq1  AGAAGAAATTCAGCAAACTCAAAACTAGAAGAGAGAAGGACCACCGTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAATTCAGCAAACTCAAAACTAGAAGAGAGAAGGACCACCGTATG  450

seq1  TTTCAGAGACCCCTTTGCTATATTCTGAGTGGACTGGCAGGAGACAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGACCCCTTTGCTATATTCTGAGTGGACTGGCAGGAGACAAGGA  500

seq1  GGGATGGCGTTCAGTAGAATAGAAGGCATTGGCTCTACTTGGCCAGGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGCGTTCAGTAGAATAGAAGGCATTGGCTCTACTTGGCCAGGTCC  550

seq1  AAATTGTTGGGATGTCTTCGGTCTTTACTAATACAATAAACTGGGGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTGGGATGTCTTCGGTCTTTACTAATACAATAAACTGGGGAGAA  600

seq1  AAAGTCACAGGTTGTGAGTTGAGATTCAGCTGAAAGACGATGAACCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACAGGTTGTGAGTTGAGATTCAGCTGAAAGACGATGAACCTTAA  650

seq1  ATAAGCTTTGTACCTGAAAAATCTTGGGAAATTTCAAGTTTTGTCTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTTTGTACCTGAAAAATCTTGGGAAATTTCAAGTTTTGTCTTTTG  700

seq1  TTTTCCAGCTAGCCCAATCTAGCCTCAGACTTGCTATATAGCAAAGGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGCTAGCCCAATCTAGCCTCAGACTTGCTATATAGCAAAGGCTA  750

seq1  TCCTTGGATTCTTGACTCCCTTAGCTCAGTCACCAAGGGTCTGGGATGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGATTCTTGACTCCCTTAGCTCAGTCACCAAGGGTCTGGGATGGC  800

seq1  TGGTGTGTGTCTCTATGCTCAGGGAAAGCTTTCATCTCTTAAAGCCGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTGTCTCTATGCTCAGGGAAAGCTTTCATCTCTTAAAGCCGAGA  850

seq1  GTAGGGAAAAGGGAAGAGCACATGCTCAGATGTCAGTTTCCTTATTACGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGAAAAGGGAAGAGCACATGCTCAGATGTCAGTTTCCTTATTACGG  900

seq1  ATAGTTTGTGTTAGTGCATTGTCACACCCTGCAAATCTA-TCTAAGGGTT  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATAGTTTGTGTTAGTGCATTGTCACACCCTGCAAATCTATTCTAAGGGTT  950

seq1  TTAAG--TTTTTG-TTTTTTCAC-TTAAAATTGAGTGGAGATGGGACCAG  995
      |||||  |||||| ||||||||| |||||||||||  |||||||||||||
seq2  TTAAGGTTTTTTGTTTTTTTCACTTTAAAATTGAGGTGAGATGGGACCAG  1000

seq1  AAGGACGCCTCAGAGGGTAAAATTGATAGCTAGGAATGACAGATGAC-TA  1044
      |  ||||||||||||||| | ||||||||||||||||||| |||||| ||
seq2  A--GACGCCTCAGAGGGTTACATTGATAGCTAGGAATGACCGATGACTTA  1048

seq1  GAATTTGATCCTCAGAATCTAT--GTAAAGAACTGCAGGAACAAAAGTGC  1092
      ||||| ||| |||||| |||||   |||||| ||   || | | ||||||
seq2  GAATTGGAT-CTCAGATTCTATTGTTAAAGACCT---GGCAGACAAGTGC  1094

seq1  AGAA-GAGACTGAGAGCAAGGTTTAGTGACCACCCCGAATCG  1133
      |||| |||||||| ||||  ||||||||||||||||||||||
seq2  AGAATGAGACTGA-AGCA--GTTTAGTGACCACCCCGAATCG  1133

seq1: chr6_35885537_35886600
seq2: B6Ng01-248H16.g_63_1130 (reverse)

seq1  GGACCCAGATGTAGCT-GTCT-CTTGTGAGACTATGCCGGGGCCTAGCAA  48
      ||||||||| |||||| |||| |||||||||||||||||||||||||| |
seq2  GGACCCAGA-GTAGCTGGTCTCCTTGTGAGACTATGCCGGGGCCTAGCCA  49

seq1  ACACAGAAGTGGATGCTCAC-AGTCAGCTAATGGATGGATCATAGGGCTC  97
      |||||| ||| ||||||||| |||||||| || ||||  |||||||   |
seq2  ACACAG-AGTTGATGCTCACAAGTCAGCT-ATTGATGATTCATAGGCTCC  97

seq1  CCAATGG-AGGA-GCTAGAGAAAGTA-GCCAAGGAGCTAAAGGGATCTGC  144
      ||| ||| |||| ||||||||||||| ||||||||||| |||||||||||
seq2  CCATTGGAAGGAGGCTAGAGAAAGTAGGCCAAGGAGCT-AAGGGATCTGC  146

seq1  AACCCTATAGGT-GGAACAACATTATGAACTAACCAGT-ACCCCGGAGCT  192
      | |||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  ACCCCTATAGGTGGGAACAACATTATGAACTAACCAGTAACCCCGGAGCT  196

seq1  CTTGACTCTAGCTGCATATATGTC-AAAAGATGGCCTAGTCGGCCATCAC  241
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  C-TGACTCTAGCTGCATATATGTCAAAAAGATGGCCTAGTCGGCCATCAC  245

seq1  TGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGG  295

seq1  GGAACACCAGTGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGGTG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACCAGTGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGGTG  345

seq1  GGTGGATATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGTTAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGTTAA  395

seq1  ATACCTAATAAAAAATGGAAAAAAAAAAAAAGAAAAAAAAAAACAAGAAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAATAAAAAATGGAAAAAAAAAAAAAGAAAAAAAAAAACAAGAAA  445

seq1  AAAAAAGAAAAATAATATTGGTTTCTTTTTATTTTTTTTAAATGACCACT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAATAATATTGGTTTCTTTTTATTTTTTTTAAATGACCACT  495

seq1  CACAGAATCAATATGCCAATAAAGATCTAAAAAGAGACCTACGTCTTGTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATCAATATGCCAATAAAGATCTAAAAAGAGACCTACGTCTTGTA  545

seq1  GTCTTACACCTAAGAAACAAAGAGGTATTTCTCGAAGGAAACATGCTTTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACACCTAAGAAACAAAGAGGTATTTCTCGAAGGAAACATGCTTTG  595

seq1  GAAGGGAGTCAGAAACTCAACGATCCCATAGGACATGTTTTCAGATACGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAGTCAGAAACTCAACGATCCCATAGGACATGTTTTCAGATACGT  645

seq1  GGAGTGGGAGTGGAGGAGCTGTCTCTGACATGACCCATGAACACATGTGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGGAGTGGAGGAGCTGTCTCTGACATGACCCATGAACACATGTGG  695

seq1  ATGGAAAGTCTGTAGAAGGCAGTTGTAGCTACAGTAGGCTCCCCCACCGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGTCTGTAGAAGGCAGTTGTAGCTACAGTAGGCTCCCCCACCGT  745

seq1  CTTTTATTAGTTCTCTTGGACTCATAGCTCTTTGTGGGCCAAGGGAATCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTAGTTCTCTTGGACTCATAGCTCTTTGTGGGCCAAGGGAATCC  795

seq1  AGTATTCAGTTGAGAACACAGATCATGTCAGGAAGCAGGTGCTCCTAGGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCAGTTGAGAACACAGATCATGTCAGGAAGCAGGTGCTCCTAGGA  845

seq1  TAACACTCTCCTTCAGCACTGTTTCTGGGACTCCTCACCTAATTTTGTTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTCTCCTTCAGCACTGTTTCTGGGACTCCTCACCTAATTTTGTTC  895

seq1  TTCTCTGGGAGACCAGTTGCTTATTTTTGCCTGGTCATTTTTTCACAAAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGGAGACCAGTTGCTTATTTTTGCCTGGTCATTTTTTCACAAAG  945

seq1  GTAAACACACAGCTCCATCTAACCTGCACAGTTTTGAATTTCTCATAATA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACACACAGCTCCATCTAACCTGCACAGTTTTGAATTTCTCATAATA  995

seq1  ACTGAATCTTTTTTTTTTTTTTAAATCTCTTCCTTTGCTTTCCCATCAAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATCTTTTTTTTTTTTTTAAATCTCTTCCTTTGCTTTCCCATCAAC  1045

seq1  TACAGATAGAGATTTTAGAATTC  1064
      |||||||||||||||||||||||
seq2  TACAGATAGAGATTTTAGAATTC  1068